# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2is6A	680	1.90e-21		
1pjrA	724	6.99e-21	c.37.1.19,c.37.1.19	32391,32392
1pjr	724	1.14e-20		
1w36B	1180	2.18e-13	c.37.1.19,c.37.1.19,c.52.1.24	114122,114123,114124
2gk6A	624	2.81e-13		
1w36C	1122	3.82e-13	c.37.1.19,c.37.1.19,c.52.1.25	114125,114126,114127
1w36D	608	6.70e-12	c.37.1.19,c.37.1.19	114128,114129
2hjvA	163	0.01285		
1fukA	165	0.07665	c.37.1.19	32409
1t5iA	172	0.1175	c.37.1.19	106450
1usgA	346	1.371	c.93.1.1	99864
2i4iA	417	1.581		
2z0mA	337	1.810		
3cssA	267	3.455		
1d2mA	665	3.493	c.37.1.19,c.37.1.19	32417,32418
1gsjA	258	3.505	c.73.1.2	70397
3ch7A	266	3.521		
2fwrA	472	3.691	c.37.1.19,c.37.1.19	134253,134254
1gs5A	258	3.747	c.73.1.2	70395
1c4oA	664	4.277	c.37.1.19,c.37.1.19	32415,32416
2liv	344	4.576		
1z5zA	271	4.693	c.37.1.19	124499
1z15A	344	5.056		
1oywA	523	6.210	a.4.5.43,c.37.1.19,c.37.1.19	93760,93761,93762
2c4nA	250	6.301	c.108.1.14	129837
2bmfA	451	6.554	c.37.1.14,c.37.1.14	128791,128792
2j0eA	266	8.035		
2rgyA	290	10.46		
1jeoA	180	10.59	c.80.1.3	66611
2jgnA	185	10.61		
1l9cA	389	11.00	c.3.1.2,d.16.1.3	77815,77816
2gagB	405	11.07		
1efyA	350	11.57	a.41.1.1,d.166.1.2	17413,42275
2v1xA	591	12.40		
1jk7A	323	12.51	d.159.1.3	63144
1z2wA	192	14.30	d.159.1.7	124390
1yksA	440	15.42	c.37.1.14,c.37.1.14	123561,123562
1pbtA	244	15.85	c.124.1.1	94416
3brqA	296	17.43		
2v8oA	444	17.47		
1ne7A	289	17.64	c.124.1.1	91833
2gukA	120	18.14		
1x31B	404	18.53		
1f2vA	219	19.33	c.23.17.1	59627
2ri0A	234	19.41		
2a22A	215	21.10	d.159.1.7	126025
1xvwA	160	21.44	c.47.1.10	122387
2db3A	434	23.09		
2gf3A	389	23.64	c.3.1.2,d.16.1.3	135070,135071
1u32A	293	24.35	d.159.1.3	107631
1fjmA	330	24.94	d.159.1.3	42082
1tc1A	220	26.69	c.61.1.1	34083
1g2qA	187	29.41	c.61.1.1	65117
1pswA	348	29.57	c.87.1.7	88287
1heiA	451	30.11	c.37.1.14,c.37.1.14	32463,32464
1cjbA	231	30.99	c.61.1.1	34079
2b82A	211	31.04	c.108.1.12	128057
1st9A	143	33.41	c.47.1.10	98987
2j4jA	226	34.02		
2e0nA	259	34.51		
2hjsA	340	37.54	c.2.1.3,d.81.1.1	136547,136548
1w24A	182	39.08	d.159.1.7	120579
2ii2A	310	40.62		
2pifA	276	40.69		
1fs5A	266	41.02	c.124.1.1	65044
1sb2A	133	45.15	d.169.1.1	118927
1xmxA	385	46.52	c.52.1.26	115568
1cbfA	285	46.69	c.90.1.1	35587
1zn8A	180	48.18	c.61.1.1	125376
1z5oA	242	49.89		
1vchA	175	50.16	c.61.1.1	119980
1vimA	200	53.25	c.80.1.3	100758
1qdeA	224	55.28	c.37.1.19	32410
1oaaA	259	57.68	c.2.1.2	29829
1eziA	228	57.76	c.68.1.13	34512
1sawA	225	58.79	d.177.1.1	112050
1jflA	228	58.80	c.78.2.1,c.78.2.1	71656,71657
2z6rA	265	60.02		
2gz1A	366	61.71	c.2.1.3,d.81.1.1	135887,135888
2fvyA	309	63.76	c.93.1.1	134227
3cvjA	243	64.32		
2ayyA	121	64.94	c.23.1.6	127576
2r00A	336	67.67		
1qdlB	195	69.46	c.23.16.1	31437
2oycA	306	69.60		
1l1qA	186	70.47	c.61.1.1	77653
1ou0A	207	70.70	c.23.17.1	93536
2bkxA	242	71.33		
2p5mA	83	71.51		
2q3bA	313	72.12		
2ggoA	401	72.73		
2vl7A	540	73.19		
1np6A	174	73.86	c.37.1.10	85954
1va0A	239	75.97	c.90.1.1	119899
2driA	271	77.13	c.93.1.1	35637
2bkyX	89	79.53	d.68.6.1	128717
3bemA	218	79.61		
2cblA	305	80.36	a.39.1.7,a.48.1.1,d.93.1.1	17380,17774,40528
1e19A	314	80.62	c.73.1.1	34967
2j66A	428	81.02		
1z7wA	322	81.35	c.79.1.1	124674
1vjqA	79	82.86	k.43.1.1	100830
1hgxA	183	85.20	c.61.1.1	34027
2ywdA	191	85.22		
1tlfA	301	85.36	c.93.1.1	35687
1xxaA	78	86.87	d.74.2.1	39700
1s3iA	310	88.17	b.46.1.1,c.65.1.1	98435,98436
1gca	309	88.97		
3cpkA	150	89.59