# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1pjr 724 1.77e-10 1pjrA 724 1.86e-10 c.37.1.19,c.37.1.19 32391,32392 2is6A 680 2.01e-10 2gk6A 624 0.000478 1w36B 1180 0.001053 c.37.1.19,c.37.1.19,c.52.1.24 114122,114123,114124 1w36C 1122 0.001666 c.37.1.19,c.37.1.19,c.52.1.25 114125,114126,114127 1w36D 608 0.04266 c.37.1.19,c.37.1.19 114128,114129 1fukA 165 0.09435 c.37.1.19 32409 2hjvA 163 0.1849 2i4iA 417 0.8459 2v1xA 591 0.8652 1usgA 346 1.344 c.93.1.1 99864 2jgnA 185 2.926 2liv 344 2.977 2db3A 434 3.187 1z15A 344 3.939 1omoA 322 5.589 c.2.1.13 104017 1va0A 239 7.532 c.90.1.1 119899 1ni9A 338 8.694 e.7.1.2 85739 1rz3A 201 10.02 c.37.1.6 98132 1dl5A 317 10.41 c.66.1.7,d.197.1.1 64720,64721 1jztA 246 10.52 c.104.1.1 63319 3bt7A 369 10.99 3borA 237 13.58 1vb5A 276 15.16 c.124.1.5 113604 2bmfA 451 17.68 c.37.1.14,c.37.1.14 128791,128792 1k4nA 192 18.07 d.32.1.5 72059 1j5yA 187 18.90 a.4.5.1,d.94.2.1 71592,71593 1vjqA 79 19.21 k.43.1.1 100830 1h70A 255 19.54 d.126.1.3 60711 1gs5A 258 20.99 c.73.1.2 70395 1u3dA 509 21.12 a.99.1.1,c.28.1.1 107638,107639 1vllA 334 21.19 c.2.1.13 108834 1ve2A 235 21.59 c.90.1.1 120008 2i06A 309 22.95 2q4eA 362 24.74 2gpyA 233 25.78 2yx1A 336 26.46 2yxeA 215 26.46 1t0bA 252 27.42 c.23.16.6 106199 1pg5A 299 28.65 c.78.1.1,c.78.1.1 104146,104147 1t5iA 172 29.08 c.37.1.19 106450 3b3fA 341 29.85 1r9cA 139 30.36 d.32.1.2 97255 2p7oA 133 30.44 3brcA 156 30.72 1dxyA 333 32.13 c.2.1.4,c.23.12.1 30094,31354 2esnA 310 32.65 a.4.5.37,c.94.1.1 132333,132334 1np7A 489 34.05 a.99.1.1,c.28.1.1 80677,80678 2b25A 336 34.86 c.66.1.13 127699 3c8uA 208 35.32 1gsjA 258 35.67 c.73.1.2 70397 1heiA 451 36.49 c.37.1.14,c.37.1.14 32463,32464 1npyA 271 36.68 c.2.1.7,c.58.1.5 85995,85996 1oywA 523 36.96 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1duvG 333 37.32 c.78.1.1,c.78.1.1 35228,35229 1z0sA 278 37.32 e.52.1.1 124328 2z0mA 337 37.96 2ewrA 170 38.39 d.218.1.11 132493 1vecA 206 38.80 c.37.1.19 100575 1edzA 320 38.82 c.2.1.7,c.58.1.2 30287,33935 1dxy 333 39.10 2ef0A 301 39.66 1sqgA 429 39.90 a.79.1.3,c.66.1.38 105912,105913 2ehzA 302 40.25 2v8oA 444 40.66 1jg1A 235 41.84 c.66.1.7 66661 1yf5L 254 42.70 c.55.1.11,c.55.1.11 123049,123050 2inbA 140 43.06 1rifA 282 46.41 c.37.1.23 97507 2f06A 144 47.82 d.58.18.11,d.58.18.11 132652,132653 1l3iA 192 48.63 c.66.1.22 77676 1owlA 484 48.72 a.99.1.1,c.28.1.1 93647,93648 2v74B 346 48.88 2egxA 269 49.02 1g5aA 628 49.79 b.71.1.1,c.1.8.1 65152,65153 1lk5A 229 50.65 c.124.1.4,d.58.40.1 73960,73961 2cukA 311 52.07 1zjcA 418 53.34 e.60.1.1 125147 1qp8A 303 53.54 c.2.1.4,c.23.12.1 30092,31352 3cvoA 202 55.02 3ladA 476 56.84 c.3.1.5,c.3.1.5,d.87.1.1 30573,30574,40208 1pcaA 95 56.91 d.58.3.1 39063 1yksA 440 57.53 c.37.1.14,c.37.1.14 123561,123562 2eq6A 464 57.70 2bh1A 250 58.39 c.55.1.11,c.55.1.11 128506,128507 1qnf 484 60.12 1qopB 396 61.37 c.79.1.1 35270 2fz4A 237 63.13 c.37.1.19 134419 2oxcA 230 64.15 1fuiA 591 64.87 b.43.2.1,c.85.1.1 25674,35444 1uslA 170 65.16 c.121.1.1 99871 1a4iA 301 65.57 c.2.1.7,c.58.1.2 30278,33926 2pwyA 258 65.72 1vfrA 218 66.35 d.90.1.1 40247 1r5jA 337 67.41 c.77.1.5 97097 3b9fI 395 67.97 3d2lA 243 68.13 2g5gX 268 69.00 1jsxA 207 69.22 c.66.1.20 71846 1hm9A 468 70.39 b.81.1.4,c.68.1.5 65866,65867 2e4uA 555 70.57 2okfA 140 70.80 1xtzA 264 72.46 1y8cA 246 73.81 c.66.1.43 116563 1mb4A 370 75.24 c.2.1.3,d.81.1.1 78908,78909 1bif 469 75.96 2yvqA 143 76.91 2ayyA 121 79.00 c.23.1.6 127576 2fclA 169 79.83 d.218.1.11 133273 1n2eA 300 79.85 c.26.1.4 85268 3b59A 310 79.92 1zmdA 474 80.59 1pytA 94 81.12 d.58.3.1 39064 1mpyA 307 81.25 d.32.1.3,d.32.1.3 38508,38509 3cneA 175 83.50 2bkwA 385 85.45 c.67.1.3 128714 2eb4A 267 86.13 1uj6A 227 88.43 c.124.1.4,d.58.40.1 107898,107899 2aifA 135 88.54 2okcA 445 88.57