/projects/compbio/experiments/protein-predict/casp8/starter-directory/Make.main:234: job running on moai23.kilokluster.ucsc.edu SAM: checkseq v3.5 (July 15, 2005) compiled 04/07/08_14:14:58 Done with sequence reading /projects/compbio/experiments/protein-predict/casp8/starter-directory/Make.main:258: LENGTH= 73 SAM: checkseq v3.5 (July 15, 2005) compiled 04/07/08_14:14:58 Done with sequence reading /projects/compbio/experiments/protein-predict/casp8/starter-directory/Make.main:3218: DIMER_BREAK_BEFORE='M74' mkdir -p decoys rm decoys/read-pdb+servers.under cd decoys; shopt -s nullglob ; for x in ../*.ts-submitted* ; do echo ReadConformPDB $x >> read-pdb+servers.under ; done cd decoys; shopt -s nullglob ; for x in *.pdb* ; do echo ReadConformPDB $x >> read-pdb+servers.under ; done cd decoys; shopt -s nullglob ; for x in ../*mer/decoys/*.pdb* ; \ do \ y=${x#../} ;\ z=${y/decoys} ;\ a=${z/T0492.} ;\ b=${a%.gz} ;\ c=${b%.pdb} ;\ echo ReadConformPDB $x chain A name $c >> read-pdb+servers.under ; \ done cd decoys; shopt -s nullglob ; for x in servers/* ; do \ y=${x%.pdb.gz} ; \ z=${y#servers/} ; \ echo ReadConformPDB $x name $z >> read-pdb+servers.under ; \ echo SCWRLConform >> read-pdb+servers.under ; \ echo NameConform $z-scwrl >> read-pdb+servers.under ; \ done chgrp protein decoys/read-pdb+servers.under chmod g+w decoys/read-pdb+servers.under rm -f decoys/evaluate.rdb sed -e s/XXX0000/T0492/ -e s/START_COL/1/ \ -e s/REAL_PDB/2k5lA/ \ -e s/_domain// \ -e s/read-pdb/read-pdb+servers/ \ -e 's|EVALDIR|/projects/compbio/experiments/protein-predict/casp8/T0492|' \ -e 's/include COSTFCN.costfcn//' \ -e s/.COSTFCN// \ < /projects/compbio/experiments/protein-predict/casp8/starter-directory/scripts/evaluate.under \ | nice -2 /projects/compbio/programs/undertaker/undertaker # command:# Seed set to 1226376033 # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading monomeric-50pc.atoms # #computed average backbone with maximum peptide_sq_deviance = 0.002 # computed average trans backbone unit from 8101 examples # computed average trans backbone unit before proline from 332 examples # computed average cis backbone unit from 20 examples # trans (non-proline) backbone unit: # CA= -2.2101 1.0129 -0.0033 # O= -0.1508 2.2440 0.0016 # C= -0.6897 1.1364 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4583 -0.0000 -0.0000 # cis backbone unit: # CA= -0.1438 2.4522 0.0007 # O= -2.0283 0.9702 0.0005 # C= -0.8017 1.0759 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4664 -0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2110 1.0636 -0.0014 # O= -0.1234 2.2469 0.0075 # C= -0.6877 1.1518 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4665 0.0000 0.0000 # After reading monomeric-50pc.atoms have 448 chains in training database # Count of chains,residues,atoms: 448,112605,876684 # 111048 residues have no bad marker # 665 residues lack atoms needed to compute omega # 322 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 6 # HAS_OXT 325 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 523 # HAS_UNKNOWN_ATOMS 2 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 208 # NON_PLANAR_PEPTIDE 143 # BAD_PEPTIDE 685 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-1332.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:CPU_time= 6.374 sec, elapsed time= 6.476 sec. # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp8/T0492 # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/T0492T0492.a2m or /projects/compbio/experiments/protein-predict/casp8/T0492T0492.a2m.gz for input Trying T0492.a2m # Making conformation for sequence T0492 numbered 1 through 73 Created new target T0492 from T0492.a2m # command:# command:# No conformations to remove in PopConform # command:# cleared Id set # command:# command:2k5lA expands to /projects/compbio/data/pdb/2k5l.pdb.gz 2k5lA: Read 81 residues and 645 atoms. # command:# Saving current conformation as real # command:# Prefix for output files set to decoys/ # command:# SetRealCost created real_cost = # ( 50.000 * real_hbond + 50.000 * real_hbond_u + 50.000 * decoy_hbond + 50.000 * decoy_hbond_u + 10.000 * real_NO_hbond + 10.000 * real_NO_hbond_u + 10.000 * decoy_NO_hbond + 10.000 * decoy_NO_hbond_u + 10.000 * knot + 200.000 * clens + 0.000 * rmsd + 35.000 * log_rmsd + 0.000 * rmsd_ca + 30.000 * log_rmsd_ca + 1.000 * GDT + 1.000 * smooth_GDT + 0.200 * missing_atoms ) # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/T0492costfcn-init-eval.under or /projects/compbio/experiments/protein-predict/casp8/T0492costfcn-init-eval.under.gz for input Trying costfcn-init-eval.under # reading script from file costfcn-init-eval.under # Prefix for input files set to /projects/compbio/lib/alphabet/ # Read 4 alphabets and 0 BackgroundProbs from alpha.alphabet # Read 2 alphabets and 0 BackgroundProbs from anglevector.alphabet # Read 29 alphabets and 0 BackgroundProbs from burial.alphabet # Read 3 alphabets and 0 BackgroundProbs from burial-sep.alphabet # Read 5 alphabets and 0 BackgroundProbs from two-spot-burial.alphabet # Read 6 alphabets and 0 BackgroundProbs from hbonds.alphabet # Read 1 alphabets and 0 BackgroundProbs from str4.alphabet Unrecognized 1th alphabet rel_sa10 for BackgroundProbs that has no name Unrecognized 1th alphabet abs_sa7 for BackgroundProbs that has no name Unrecognized 1th alphabet Bystroff for BackgroundProbs that has no name Unrecognized 1th alphabet chi1_3 for BackgroundProbs that has no name Unrecognized 1th alphabet DSSP for BackgroundProbs that has no name Unrecognized 1th alphabet EBGHSTL for BackgroundProbs that has no name Unrecognized 1th alphabet str for BackgroundProbs that has no name Unrecognized 1th alphabet str2 for BackgroundProbs that has no name Unrecognized 1th alphabet dssp_ehl2 for BackgroundProbs that has no name Unrecognized 1th alphabet STRIDE for BackgroundProbs that has no name Unrecognized 1th alphabet EBGHTL for BackgroundProbs that has no name Unrecognized 1th alphabet stride_ehl2 for BackgroundProbs that has no name Unrecognized 1th alphabet tco for BackgroundProbs that has no name Unrecognized 1th alphabet pb for BackgroundProbs that has no name Unrecognized 1th alphabet gamma_2 for BackgroundProbs that has no name Unrecognized 1th alphabet str5 for BackgroundProbs that has no name Unrecognized 1th alphabet strand_sep for BackgroundProbs that has no name # Read 0 alphabets and 24 BackgroundProbs from dunbrack-in-scop.backgrounds # Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # ReadAtomType exp2-pdb.types Read AtomType exp2-pdb with 50 types. # ReadClashTable exp2-pdb-cullpdb_pc80_res1.2_R0.2_d070810_chains408-2symm.clash # Read ClashTable exp2-pdb-cullpdb_pc80_res1.2_R0.2_d070810_chains408-2symm checking bonds symmetric at MaxSep 2 # Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # reading histogram from smoothed-monomeric-50pc-CB14.hist # created burial cost function cb14 with radius 14.000 with spots at CB counting only CB # Reading spots from near-backbone-center.spot # reading histogram from smoothed-near-backbone-2spot.hist # Reading spots from near-backbone-count.spot # created burial cost function near_backbone with radius 9.650 with spots at near-backbone-center.spot counting only near-backbone-count.spot # Reading spots from way-back-center.spot # reading histogram from smoothed-way-back-2spot.hist # Reading spots from way-back-count.spot # created burial cost function way_back with radius 8.900 with spots at way-back-center.spot counting only way-back-count.spot # reading histogram from dunbrack-40pc-3157-CB8-sep9.hist # created burial cost function CB8-sep9 with radius 8.000 with spots at CB counting only CB with minimum separation 9 # Reading spots from monomeric-50pc-dry-5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-5.hist # created burial cost function dry5 with radius 5.000 with spots at monomeric-50pc-dry-5.spot # Reading spots from monomeric-50pc-wet-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-wet-6.5.hist # created burial cost function wet6.5 with radius 6.500 with spots at monomeric-50pc-wet-6.5.spot # Reading spots from monomeric-50pc-dry-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-6.5.hist # created burial cost function dry6.5 with radius 6.500 with spots at monomeric-50pc-dry-6.5.spot # Reading spots from monomeric-50pc-dry-8.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-8.hist # created burial cost function dry8 with radius 8.000 with spots at monomeric-50pc-dry-8.spot # Reading spots from monomeric-50pc-dry-10.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-10.hist # created burial cost function dry10 with radius 10.000 with spots at monomeric-50pc-dry-10.spot # Reading spots from monomeric-50pc-dry-12.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/T0492T0492.t2k.alpha.rdb or /projects/compbio/experiments/protein-predict/casp8/T0492T0492.t2k.alpha.rdb.gz for input Trying T0492.t2k.alpha.rdb Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/T0492T0492.t04.alpha.rdb or /projects/compbio/experiments/protein-predict/casp8/T0492T0492.t04.alpha.rdb.gz for input Trying T0492.t04.alpha.rdb Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/T0492T0492.t06.alpha.rdb or /projects/compbio/experiments/protein-predict/casp8/T0492T0492.t06.alpha.rdb.gz for input Trying T0492.t06.alpha.rdb # reading histogram from smoothed-monomeric-50pc-dry-12.hist # created burial cost function dry12 with radius 12.000 with spots at monomeric-50pc-dry-12.spot # reading histogram from dunbrack-2191-alpha.hist # created alpha cost function alpha with offset 0 and 360 bins # reading histogram from dunbrack-2191-alpha-1.hist # created alpha cost function alpha_prev with offset -1 and 360 bins # Prefix for input files set to /projects/compbio/experiments/protein-predict/casp8/T0492 # CreateCombinedNNet created CombinedNNet pred_alpha_back Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/T0492T0492.t2k.bys.rdb or /projects/compbio/experiments/protein-predict/casp8/T0492T0492.t2k.bys.rdb.gz for input Trying T0492.t2k.bys.rdb Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/T0492T0492.t04.bys.rdb or /projects/compbio/experiments/protein-predict/casp8/T0492T0492.t04.bys.rdb.gz for input Trying T0492.t04.bys.rdb Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/T0492T0492.t06.bys.rdb or /projects/compbio/experiments/protein-predict/casp8/T0492T0492.t06.bys.rdb.gz for input Trying T0492.t06.bys.rdb # created predicted alpha cost function pred_alpha_back with 360 bins smoothing outer_iter=2 inner_iter=1 width=7 # CreateCombinedNNet created CombinedNNet bys_back # created predicted AngleVectorPredCostFcn pred_bys_back Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/T0492T0492.t2k.pb.rdb or /projects/compbio/experiments/protein-predict/casp8/T0492T0492.t2k.pb.rdb.gz for input Trying T0492.t2k.pb.rdb Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/T0492T0492.t04.pb.rdb or /projects/compbio/experiments/protein-predict/casp8/T0492T0492.t04.pb.rdb.gz for input Trying T0492.t04.pb.rdb Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/T0492T0492.t06.pb.rdb or /projects/compbio/experiments/protein-predict/casp8/T0492T0492.t06.pb.rdb.gz for input Trying T0492.t06.pb.rdb # CreateCombinedNNet created CombinedNNet pb_back # created predicted AngleVectorPredCostFcn pred_pb_back Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/T0492T0492.t2k.n_sep.rdb or /projects/compbio/experiments/protein-predict/casp8/T0492T0492.t2k.n_sep.rdb.gz for input Trying T0492.t2k.n_sep.rdb Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/T0492T0492.t04.n_sep.rdb or /projects/compbio/experiments/protein-predict/casp8/T0492T0492.t04.n_sep.rdb.gz for input Trying T0492.t04.n_sep.rdb Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/T0492T0492.t06.n_sep.rdb or /projects/compbio/experiments/protein-predict/casp8/T0492T0492.t06.n_sep.rdb.gz for input Trying T0492.t06.n_sep.rdb # CreateCombinedNNet created CombinedNNet n_sep_back # created predicted HbondPredCostFcn pred_n_sep_back Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/T0492T0492.t2k.o_sep.rdb or /projects/compbio/experiments/protein-predict/casp8/T0492T0492.t2k.o_sep.rdb.gz for input Trying T0492.t2k.o_sep.rdb Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/T0492T0492.t04.o_sep.rdb or /projects/compbio/experiments/protein-predict/casp8/T0492T0492.t04.o_sep.rdb.gz for input Trying T0492.t04.o_sep.rdb Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/T0492T0492.t06.o_sep.rdb or /projects/compbio/experiments/protein-predict/casp8/T0492T0492.t06.o_sep.rdb.gz for input Trying T0492.t06.o_sep.rdb # CreateCombinedNNet created CombinedNNet o_sep_back # created predicted HbondPredCostFcn pred_o_sep_back Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/T0492T0492.t2k.n_notor.rdb or /projects/compbio/experiments/protein-predict/casp8/T0492T0492.t2k.n_notor.rdb.gz for input Trying T0492.t2k.n_notor.rdb Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/T0492T0492.t04.n_notor.rdb or /projects/compbio/experiments/protein-predict/casp8/T0492T0492.t04.n_notor.rdb.gz for input Trying T0492.t04.n_notor.rdb Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/T0492T0492.t06.n_notor.rdb or /projects/compbio/experiments/protein-predict/casp8/T0492T0492.t06.n_notor.rdb.gz for input Trying T0492.t06.n_notor.rdb # CreateCombinedNNet created CombinedNNet n_notor_back # created predicted HbondPredCostFcn pred_n_notor_back Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/T0492T0492.t2k.o_notor.rdb or /projects/compbio/experiments/protein-predict/casp8/T0492T0492.t2k.o_notor.rdb.gz for input Trying T0492.t2k.o_notor.rdb Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/T0492T0492.t04.o_notor.rdb or /projects/compbio/experiments/protein-predict/casp8/T0492T0492.t04.o_notor.rdb.gz for input Trying T0492.t04.o_notor.rdb Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/T0492T0492.t06.o_notor.rdb or /projects/compbio/experiments/protein-predict/casp8/T0492T0492.t06.o_notor.rdb.gz for input Trying T0492.t06.o_notor.rdb # CreateCombinedNNet created CombinedNNet o_notor_back # created predicted HbondPredCostFcn pred_o_notor_back Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/T0492T0492.t2k.n_notor2.rdb or /projects/compbio/experiments/protein-predict/casp8/T0492T0492.t2k.n_notor2.rdb.gz for input Trying T0492.t2k.n_notor2.rdb Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/T0492T0492.t04.n_notor2.rdb or /projects/compbio/experiments/protein-predict/casp8/T0492T0492.t04.n_notor2.rdb.gz for input Trying T0492.t04.n_notor2.rdb Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/T0492T0492.t06.n_notor2.rdb or /projects/compbio/experiments/protein-predict/casp8/T0492T0492.t06.n_notor2.rdb.gz for input Trying T0492.t06.n_notor2.rdb # CreateCombinedNNet created CombinedNNet n_notor2_back # created predicted HbondPredCostFcn pred_n_notor2_back Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/T0492T0492.t2k.o_notor2.rdb or /projects/compbio/experiments/protein-predict/casp8/T0492T0492.t2k.o_notor2.rdb.gz for input Trying T0492.t2k.o_notor2.rdb Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/T0492T0492.t04.o_notor2.rdb or /projects/compbio/experiments/protein-predict/casp8/T0492T0492.t04.o_notor2.rdb.gz for input Trying T0492.t04.o_notor2.rdb Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/T0492T0492.t06.o_notor2.rdb or /projects/compbio/experiments/protein-predict/casp8/T0492T0492.t06.o_notor2.rdb.gz for input Trying T0492.t06.o_notor2.rdb # CreateCombinedNNet created CombinedNNet o_notor2_back # created predicted HbondPredCostFcn pred_o_notor2_back Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/T0492T0492.t2k.str4.rdb or /projects/compbio/experiments/protein-predict/casp8/T0492T0492.t2k.str4.rdb.gz for input Trying T0492.t2k.str4.rdb Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/T0492T0492.t04.str4.rdb or /projects/compbio/experiments/protein-predict/casp8/T0492T0492.t04.str4.rdb.gz for input Trying T0492.t04.str4.rdb Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/T0492T0492.t06.str4.rdb or /projects/compbio/experiments/protein-predict/casp8/T0492T0492.t06.str4.rdb.gz for input Trying T0492.t06.str4.rdb # CreateCombinedNNet created CombinedNNet str4_back # created predicted HbondPredCostFcn pred_str4_back Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/T0492T0492.t2k.near-backbone-11.rdb or /projects/compbio/experiments/protein-predict/casp8/T0492T0492.t2k.near-backbone-11.rdb.gz for input Trying T0492.t2k.near-backbone-11.rdb Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/T0492T0492.t04.near-backbone-11.rdb or /projects/compbio/experiments/protein-predict/casp8/T0492T0492.t04.near-backbone-11.rdb.gz for input Trying T0492.t04.near-backbone-11.rdb Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/T0492T0492.t06.near-backbone-11.rdb or /projects/compbio/experiments/protein-predict/casp8/T0492T0492.t06.near-backbone-11.rdb.gz for input Trying T0492.t06.near-backbone-11.rdb # CreateCombinedNNet created CombinedNNet pred_nb11_back # created predicted BurialPredCostFcn pred_nb11_back Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/T0492T0492.t2k.CB_burial_14_7.rdb or /projects/compbio/experiments/protein-predict/casp8/T0492T0492.t2k.CB_burial_14_7.rdb.gz for input Trying T0492.t2k.CB_burial_14_7.rdb Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/T0492T0492.t04.CB_burial_14_7.rdb or /projects/compbio/experiments/protein-predict/casp8/T0492T0492.t04.CB_burial_14_7.rdb.gz for input Trying T0492.t04.CB_burial_14_7.rdb Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/T0492T0492.t06.CB_burial_14_7.rdb or /projects/compbio/experiments/protein-predict/casp8/T0492T0492.t06.CB_burial_14_7.rdb.gz for input Trying T0492.t06.CB_burial_14_7.rdb # CreateCombinedNNet created CombinedNNet pred_cb14_back # created predicted BurialPredCostFcn pred_cb14_back Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/T0492T0492.t06.CB8-sep9.rdb or /projects/compbio/experiments/protein-predict/casp8/T0492T0492.t06.CB8-sep9.rdb.gz for input Trying T0492.t06.CB8-sep9.rdb # CreateCombinedNNet created CombinedNNet pred_CB8_sep9_back # created predicted BurialPredCostFcn pred_CB8_sep9_back # future Constraint commands -> align_constraints # future HelixConstraint commands -> align_constraints # future StrandConstraint commands -> align_constraints # future SheetConstraint commands -> align_constraints # future Hbond commands -> align_constraints # future SSbond commands -> align_constraints Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/T0492align.constraints or /projects/compbio/experiments/protein-predict/casp8/T0492align.constraints.gz for input Trying align.constraints # reading script from file align.constraints # Constraint # added constraint: constraint((T0492)I41.CB, (T0492)I53.CB) [> 3.468 = 5.780 < 7.514] w=1.000 to align_constraints # Constraint # added constraint: constraint((T0492)I41.CB, (T0492)Q52.CB) [> 4.427 = 7.379 < 9.592] w=1.000 to align_constraints # Constraint # added constraint: constraint((T0492)I39.CB, (T0492)V55.CB) [> 3.457 = 5.762 < 7.490] w=1.000 to align_constraints # Constraint # added constraint: constraint((T0492)I39.CB, (T0492)N54.CB) [> 3.970 = 6.617 < 8.603] w=1.000 to align_constraints # Constraint # added constraint: constraint((T0492)I39.CB, (T0492)I53.CB) [> 2.926 = 4.877 < 6.340] w=1.000 to align_constraints # Constraint # added constraint: constraint((T0492)R42.CB, (T0492)N54.CB) [> 3.984 = 6.640 < 8.632] w=0.946 to align_constraints # Constraint # added constraint: constraint((T0492)R42.CB, (T0492)Q52.CB) [> 3.175 = 5.292 < 6.880] w=0.946 to align_constraints # Constraint # added constraint: constraint((T0492)I41.CB, (T0492)N54.CB) [> 4.453 = 7.422 < 9.648] w=0.946 to align_constraints # Constraint # added constraint: constraint((T0492)Y40.CB, (T0492)I53.CB) [> 4.134 = 6.890 < 8.957] w=0.944 to align_constraints # Constraint # added constraint: constraint((T0492)Y40.CB, (T0492)N54.CB) [> 2.603 = 4.338 < 5.640] w=0.890 to align_constraints # Constraint # added constraint: constraint((T0492)Q52.CB, (T0492)S61.CB) [> 3.015 = 5.025 < 6.533] w=0.890 to align_constraints # Constraint # added constraint: constraint((T0492)I51.CB, (T0492)A67.CB) [> 3.611 = 6.018 < 7.823] w=0.777 to align_constraints # Constraint # added constraint: constraint((T0492)I51.CB, (T0492)L62.CB) [> 3.251 = 5.418 < 7.043] w=0.777 to align_constraints # Constraint # added constraint: constraint((T0492)Y40.CB, (T0492)V55.CB) [> 4.525 = 7.542 < 9.804] w=0.720 to align_constraints # Constraint # added constraint: constraint((T0492)I39.CB, (T0492)V72.CB) [> 4.498 = 7.496 < 9.745] w=0.720 to align_constraints # Constraint # added constraint: constraint((T0492)I53.CB, (T0492)L62.CB) [> 3.575 = 5.959 < 7.746] w=0.720 to align_constraints # Constraint # added constraint: constraint((T0492)Q52.CB, (T0492)L62.CB) [> 4.236 = 7.061 < 9.179] w=0.720 to align_constraints # Constraint # added constraint: constraint((T0492)T12.CB, (T0492)I39.CB) [> 4.277 = 7.128 < 9.266] w=0.720 to align_constraints # Constraint # added constraint: constraint((T0492)V13.CB, (T0492)I39.CB) [> 3.610 = 6.017 < 7.822] w=0.720 to align_constraints # Constraint # added constraint: constraint((T0492)K14.CB, (T0492)G36.CA) [> 3.570 = 5.950 < 7.735] w=0.720 to align_constraints # Constraint # added constraint: constraint((T0492)V15.CB, (T0492)R35.CB) [> 3.478 = 5.797 < 7.537] w=0.720 to align_constraints # Constraint # added constraint: constraint((T0492)K14.CB, (T0492)E38.CB) [> 3.212 = 5.353 < 6.958] w=0.720 to align_constraints # Constraint # added constraint: constraint((T0492)V13.CB, (T0492)I41.CB) [> 3.637 = 6.062 < 7.881] w=0.720 to align_constraints # Constraint # added constraint: constraint((T0492)C37.CB, (T0492)V55.CB) [> 4.519 = 7.532 < 9.792] w=0.718 to align_constraints # Constraint # added constraint: constraint((T0492)I51.CB, (T0492)S61.CB) [> 4.116 = 6.860 < 8.918] w=0.677 to align_constraints # Constraint # added constraint: constraint((T0492)V13.CB, (T0492)V72.CB) [> 2.893 = 4.821 < 6.267] w=0.664 to align_constraints # Constraint # added constraint: constraint((T0492)K14.CB, (T0492)V72.CB) [> 3.845 = 6.409 < 8.332] w=0.664 to align_constraints # Constraint # added constraint: constraint((T0492)K14.CB, (T0492)E73.CB) [> 2.934 = 4.890 < 6.357] w=0.664 to align_constraints # Constraint # added constraint: constraint((T0492)V15.CB, (T0492)I70.CB) [> 3.862 = 6.436 < 8.367] w=0.664 to align_constraints # Constraint # added constraint: constraint((T0492)V16.CB, (T0492)E71.CB) [> 3.025 = 5.042 < 6.554] w=0.664 to align_constraints # Constraint # added constraint: constraint((T0492)H19.CB, (T0492)M69.CB) [> 3.814 = 6.357 < 8.265] w=0.664 to align_constraints # Constraint # added constraint: constraint((T0492)T12.CB, (T0492)Y40.CB) [> 3.059 = 5.099 < 6.628] w=0.664 to align_constraints # Constraint # added constraint: constraint((T0492)V13.CB, (T0492)Y40.CB) [> 4.294 = 7.156 < 9.303] w=0.664 to align_constraints # Constraint # added constraint: constraint((T0492)K14.CB, (T0492)I39.CB) [> 4.265 = 7.108 < 9.240] w=0.664 to align_constraints # Constraint # added constraint: constraint((T0492)V15.CB, (T0492)I39.CB) [> 3.752 = 6.253 < 8.129] w=0.664 to align_constraints # Constraint # added constraint: constraint((T0492)V15.CB, (T0492)V72.CB) [> 3.514 = 5.856 < 7.613] w=0.664 to align_constraints # Constraint # added constraint: constraint((T0492)V16.CB, (T0492)V72.CB) [> 3.746 = 6.243 < 8.117] w=0.664 to align_constraints # Constraint # added constraint: constraint((T0492)V16.CB, (T0492)E73.CB) [> 3.078 = 5.130 < 6.669] w=0.664 to align_constraints # Constraint # added constraint: constraint((T0492)K17.CB, (T0492)I70.CB) [> 3.635 = 6.059 < 7.876] w=0.664 to align_constraints # Constraint # added constraint: constraint((T0492)V15.CB, (T0492)G36.CA) [> 3.130 = 5.217 < 6.782] w=0.664 to align_constraints # Constraint # added constraint: constraint((T0492)I41.CB, (T0492)I51.CB) [> 3.647 = 6.078 < 7.901] w=0.662 to align_constraints # Constraint # added constraint: constraint((T0492)V13.CB, (T0492)E38.CB) [> 4.257 = 7.094 < 9.222] w=0.620 to align_constraints # Constraint # added constraint: constraint((T0492)T12.CB, (T0492)E38.CB) [> 3.713 = 6.189 < 8.045] w=0.620 to align_constraints # Constraint # added constraint: constraint((T0492)V15.CB, (T0492)E38.CB) [> 4.425 = 7.375 < 9.587] w=0.620 to align_constraints # Constraint # added constraint: constraint((T0492)I51.CB, (T0492)R63.CB) [> 4.475 = 7.458 < 9.695] w=0.608 to align_constraints # Constraint # added constraint: constraint((T0492)Q11.CB, (T0492)I41.CB) [> 3.610 = 6.016 < 7.821] w=0.574 to align_constraints # Constraint # added constraint: constraint((T0492)V16.CB, (T0492)R35.CB) [> 3.732 = 6.220 < 8.086] w=0.551 to align_constraints # Constraint # added constraint: constraint((T0492)V15.CB, (T0492)C37.CB) [> 2.980 = 4.966 < 6.456] w=0.551 to align_constraints # Constraint # added constraint: constraint((T0492)K14.CB, (T0492)C37.CB) [> 3.726 = 6.210 < 8.073] w=0.551 to align_constraints # Constraint # added constraint: constraint((T0492)L18.CB, (T0492)I70.CB) [> 3.392 = 5.654 < 7.350] w=0.551 to align_constraints # Constraint # added constraint: constraint((T0492)M31.CB, (T0492)L60.CB) [> 3.769 = 6.281 < 8.165] w=0.551 to align_constraints # Constraint # added constraint: constraint((T0492)G48.CA, (T0492)K64.CB) [> 3.547 = 5.912 < 7.686] w=0.507 to align_constraints # Constraint # added constraint: constraint((T0492)T12.CB, (T0492)I41.CB) [> 4.465 = 7.442 < 9.674] w=0.507 to align_constraints # Constraint # added constraint: constraint((T0492)M31.CB, (T0492)V55.CB) [> 3.366 = 5.611 < 7.294] w=0.507 to align_constraints # Constraint # added constraint: constraint((T0492)V15.CB, (T0492)E71.CB) [> 4.296 = 7.160 < 9.308] w=0.495 to align_constraints # Constraint # added constraint: constraint((T0492)R42.CB, (T0492)I51.CB) [> 4.300 = 7.167 < 9.317] w=0.493 to align_constraints # Constraint # added constraint: constraint((T0492)I33.CB, (T0492)V55.CB) [> 3.982 = 6.637 < 8.629] w=0.493 to align_constraints # Constraint # added constraint: constraint((T0492)E38.CB, (T0492)V55.CB) [> 4.374 = 7.289 < 9.476] w=0.493 to align_constraints # Constraint # added constraint: constraint((T0492)M31.CB, (T0492)Y58.CB) [> 3.107 = 5.178 < 6.731] w=0.451 to align_constraints # Constraint # added constraint: constraint((T0492)V15.CB, (T0492)I33.CB) [> 3.609 = 6.015 < 7.819] w=0.449 to align_constraints # Constraint # added constraint: constraint((T0492)D49.CB, (T0492)K64.CB) [> 3.114 = 5.191 < 6.748] w=0.439 to align_constraints # Constraint # added constraint: constraint((T0492)L18.CB, (T0492)M69.CB) [> 4.109 = 6.849 < 8.904] w=0.439 to align_constraints # Constraint # added constraint: constraint((T0492)Q11.CB, (T0492)R42.CB) [> 4.441 = 7.402 < 9.622] w=0.405 to align_constraints # Constraint # added constraint: constraint((T0492)L18.CB, (T0492)I28.CB) [> 4.164 = 6.939 < 9.021] w=0.395 to align_constraints # Constraint # added constraint: constraint((T0492)H19.CB, (T0492)I70.CB) [> 4.173 = 6.954 < 9.041] w=0.382 to align_constraints # Constraint # added constraint: constraint((T0492)I28.CB, (T0492)L60.CB) [> 3.770 = 6.283 < 8.168] w=0.382 to align_constraints # Constraint # added constraint: constraint((T0492)K43.CB, (T0492)Q52.CB) [> 3.709 = 6.181 < 8.036] w=0.372 to align_constraints # Constraint # added constraint: constraint((T0492)G10.CA, (T0492)I41.CB) [> 3.543 = 5.906 < 7.677] w=0.372 to align_constraints # Constraint # added constraint: constraint((T0492)C9.CB, (T0492)I41.CB) [> 3.192 = 5.320 < 6.916] w=0.338 to align_constraints # Constraint # added constraint: constraint((T0492)G20.CA, (T0492)M69.CB) [> 3.148 = 5.246 < 6.820] w=0.338 to align_constraints # Constraint # added constraint: constraint((T0492)L24.CB, (T0492)M69.CB) [> 3.643 = 6.072 < 7.893] w=0.338 to align_constraints # Constraint # added constraint: constraint((T0492)I39.CB, (T0492)L60.CB) [> 4.346 = 7.243 < 9.416] w=0.338 to align_constraints # Constraint # added constraint: constraint((T0492)R42.CB, (T0492)I53.CB) [> 4.178 = 6.963 < 9.052] w=0.338 to align_constraints # Constraint # added constraint: constraint((T0492)R42.CB, (T0492)E59.CB) [> 4.314 = 7.190 < 9.347] w=0.338 to align_constraints # Constraint # added constraint: constraint((T0492)P50.CB, (T0492)R63.CB) [> 3.531 = 5.886 < 7.651] w=0.338 to align_constraints # Constraint # added constraint: constraint((T0492)P50.CB, (T0492)L62.CB) [> 4.155 = 6.925 < 9.003] w=0.338 to align_constraints # Constraint # added constraint: constraint((T0492)P50.CB, (T0492)S61.CB) [> 3.676 = 6.126 < 7.964] w=0.338 to align_constraints # Constraint # added constraint: constraint((T0492)C9.CB, (T0492)K43.CB) [> 2.621 = 4.368 < 5.679] w=0.338 to align_constraints # Constraint # added constraint: constraint((T0492)A7.CB, (T0492)V72.CB) [> 4.691 = 7.818 < 10.163] w=0.338 to align_constraints # Constraint # added constraint: constraint((T0492)A7.CB, (T0492)I51.CB) [> 4.239 = 7.064 < 9.183] w=0.338 to align_constraints # Constraint # added constraint: constraint((T0492)M31.CB, (T0492)I53.CB) [> 4.565 = 7.609 < 9.892] w=0.338 to align_constraints # Constraint # added constraint: constraint((T0492)V15.CB, (T0492)T34.CB) [> 4.064 = 6.773 < 8.805] w=0.326 to align_constraints # Constraint # added constraint: constraint((T0492)G36.CA, (T0492)V55.CB) [> 4.017 = 6.695 < 8.703] w=0.323 to align_constraints # Constraint # added constraint: constraint((T0492)T21.CB, (T0492)A66.CB) [> 4.357 = 7.262 < 9.441] w=0.315 to align_constraints # Constraint # added constraint: constraint((T0492)Q11.CB, (T0492)Y40.CB) [> 4.023 = 6.705 < 8.717] w=0.292 to align_constraints # Constraint # added constraint: constraint((T0492)C9.CB, (T0492)R42.CB) [> 3.579 = 5.966 < 7.755] w=0.282 to align_constraints # Constraint # added constraint: constraint((T0492)K8.CB, (T0492)K43.CB) [> 4.336 = 7.227 < 9.395] w=0.282 to align_constraints # Constraint # added constraint: constraint((T0492)L24.CB, (T0492)L60.CB) [> 4.427 = 7.378 < 9.592] w=0.282 to align_constraints # Constraint # added constraint: constraint((T0492)L24.CB, (T0492)L62.CB) [> 4.430 = 7.383 < 9.598] w=0.282 to align_constraints # Constraint # added constraint: constraint((T0492)R27.CB, (T0492)L60.CB) [> 3.221 = 5.369 < 6.980] w=0.282 to align_constraints # Constraint # added constraint: constraint((T0492)V44.CB, (T0492)S61.CB) [> 4.114 = 6.856 < 8.913] w=0.282 to align_constraints # Constraint # added constraint: constraint((T0492)V15.CB, (T0492)E73.CB) [> 4.502 = 7.504 < 9.755] w=0.270 to align_constraints # Constraint # added constraint: constraint((T0492)V16.CB, (T0492)I70.CB) [> 4.155 = 6.925 < 9.003] w=0.226 to align_constraints # Constraint # added constraint: constraint((T0492)V16.CB, (T0492)C37.CB) [> 4.400 = 7.334 < 9.534] w=0.226 to align_constraints # Constraint # added constraint: constraint((T0492)D30.CB, (T0492)Y58.CB) [> 4.353 = 7.255 < 9.431] w=0.225 to align_constraints # Constraint # added constraint: constraint((T0492)L18.CB, (T0492)T34.CB) [> 3.471 = 5.784 < 7.520] w=0.213 to align_constraints # Constraint # added constraint: constraint((T0492)L24.CB, (T0492)R63.CB) [> 4.092 = 6.821 < 8.867] w=0.213 to align_constraints # Constraint # added constraint: constraint((T0492)A7.CB, (T0492)V44.CB) [> 2.834 = 4.724 < 6.141] w=0.169 to align_constraints # Constraint # added constraint: constraint((T0492)K8.CB, (T0492)V44.CB) [> 3.741 = 6.235 < 8.105] w=0.169 to align_constraints # Constraint # added constraint: constraint((T0492)C9.CB, (T0492)V44.CB) [> 3.478 = 5.797 < 7.536] w=0.169 to align_constraints # Constraint # added constraint: constraint((T0492)V13.CB, (T0492)I53.CB) [> 4.629 = 7.715 < 10.029] w=0.169 to align_constraints # Constraint # added constraint: constraint((T0492)L24.CB, (T0492)I70.CB) [> 4.397 = 7.329 < 9.528] w=0.169 to align_constraints # Constraint # added constraint: constraint((T0492)I33.CB, (T0492)R56.CB) [> 4.668 = 7.780 < 10.114] w=0.169 to align_constraints # Constraint # added constraint: constraint((T0492)I51.CB, (T0492)L60.CB) [> 4.605 = 7.675 < 9.977] w=0.169 to align_constraints # Constraint # added constraint: constraint((T0492)I33.CB, (T0492)I70.CB) [> 3.804 = 6.340 < 8.242] w=0.169 to align_constraints # Constraint # added constraint: constraint((T0492)I28.CB, (T0492)I70.CB) [> 4.417 = 7.361 < 9.569] w=0.169 to align_constraints # Constraint # added constraint: constraint((T0492)I28.CB, (T0492)A66.CB) [> 4.680 = 7.800 < 10.140] w=0.169 to align_constraints # Constraint # added constraint: constraint((T0492)G20.CA, (T0492)E68.CB) [> 4.790 = 7.983 < 10.378] w=0.169 to align_constraints # Constraint # added constraint: constraint((T0492)A45.CB, (T0492)K64.CB) [> 4.210 = 7.017 < 9.123] w=0.169 to align_constraints # Constraint # added constraint: constraint((T0492)L4.CB, (T0492)A67.CB) [> 2.476 = 4.127 < 5.365] w=0.169 to align_constraints # Constraint # added constraint: constraint((T0492)L4.CB, (T0492)L62.CB) [> 4.071 = 6.785 < 8.820] w=0.169 to align_constraints # Constraint # added constraint: constraint((T0492)L4.CB, (T0492)I51.CB) [> 2.970 = 4.950 < 6.435] w=0.169 to align_constraints # Constraint # added constraint: constraint((T0492)L4.CB, (T0492)I41.CB) [> 3.739 = 6.231 < 8.101] w=0.169 to align_constraints # Constraint # added constraint: constraint((T0492)S3.CB, (T0492)V72.CB) [> 4.722 = 7.870 < 10.231] w=0.169 to align_constraints # Constraint # added constraint: constraint((T0492)S3.CB, (T0492)I70.CB) [> 4.238 = 7.064 < 9.183] w=0.169 to align_constraints # Constraint # added constraint: constraint((T0492)F2.CB, (T0492)V72.CB) [> 3.682 = 6.137 < 7.979] w=0.169 to align_constraints # Constraint # added constraint: constraint((T0492)F2.CB, (T0492)E71.CB) [> 4.298 = 7.163 < 9.312] w=0.169 to align_constraints # Constraint # added constraint: constraint((T0492)P50.CB, (T0492)A67.CB) [> 4.020 = 6.701 < 8.711] w=0.169 to align_constraints # Constraint # added constraint: constraint((T0492)D49.CB, (T0492)A67.CB) [> 4.195 = 6.991 < 9.088] w=0.169 to align_constraints # Constraint # added constraint: constraint((T0492)I33.CB, (T0492)L60.CB) [> 4.200 = 7.000 < 9.100] w=0.169 to align_constraints # Constraint # added constraint: constraint((T0492)I33.CB, (T0492)I53.CB) [> 3.543 = 5.905 < 7.676] w=0.169 to align_constraints # Constraint # added constraint: constraint((T0492)G32.CA, (T0492)V55.CB) [> 3.931 = 6.552 < 8.518] w=0.169 to align_constraints # Constraint # added constraint: constraint((T0492)L4.CB, (T0492)V72.CB) [> 3.732 = 6.219 < 8.085] w=0.169 to align_constraints # Constraint # added constraint: constraint((T0492)L4.CB, (T0492)E71.CB) [> 4.661 = 7.768 < 10.098] w=0.169 to align_constraints # Constraint # added constraint: constraint((T0492)L4.CB, (T0492)I70.CB) [> 3.036 = 5.060 < 6.578] w=0.169 to align_constraints # Constraint # added constraint: constraint((T0492)I53.CB, (T0492)A67.CB) [> 4.085 = 6.808 < 8.851] w=0.169 to align_constraints # Constraint # added constraint: constraint((T0492)K14.CB, (T0492)R35.CB) [> 4.202 = 7.004 < 9.105] w=0.157 to align_constraints # Constraint # added constraint: constraint((T0492)L18.CB, (T0492)G36.CA) [> 4.184 = 6.973 < 9.065] w=0.157 to align_constraints # Constraint # added constraint: constraint((T0492)D6.CB, (T0492)P46.CB) [> 3.794 = 6.323 < 8.219] w=0.113 to align_constraints # Constraint # added constraint: constraint((T0492)K17.CB, (T0492)I28.CB) [> 3.736 = 6.227 < 8.096] w=0.113 to align_constraints # Constraint # added constraint: constraint((T0492)G32.CA, (T0492)Y58.CB) [> 4.461 = 7.435 < 9.665] w=0.113 to align_constraints # Constraint # added constraint: constraint((T0492)V13.CB, (T0492)C37.CB) [> 3.374 = 5.623 < 7.310] w=0.113 to align_constraints # Constraint # added constraint: constraint((T0492)Q11.CB, (T0492)I39.CB) [> 3.672 = 6.119 < 7.955] w=0.113 to align_constraints # Constraint # added constraint: constraint((T0492)G20.CA, (T0492)S65.CB) [> 4.101 = 6.836 < 8.886] w=0.113 to align_constraints # Constraint # added constraint: constraint((T0492)M31.CB, (T0492)E59.CB) [> 4.385 = 7.309 < 9.502] w=0.113 to align_constraints # Constraint # added constraint: constraint((T0492)E38.CB, (T0492)N54.CB) [> 3.655 = 6.091 < 7.918] w=0.110 to align_constraints # Constraint # added constraint: constraint((T0492)E38.CB, (T0492)I53.CB) [> 3.427 = 5.711 < 7.425] w=0.110 to align_constraints # Constraint # added constraint: constraint((T0492)L18.CB, (T0492)M29.CB) [> 4.412 = 7.353 < 9.559] w=0.100 to align_constraints # Constraint # added constraint: constraint((T0492)K25.CB, (T0492)L62.CB) [> 4.250 = 7.083 < 9.208] w=0.100 to align_constraints # Constraint # added constraint: constraint((T0492)K25.CB, (T0492)R63.CB) [> 3.924 = 6.539 < 8.501] w=0.100 to align_constraints # Constraint # added constraint: constraint((T0492)I28.CB, (T0492)L62.CB) [> 3.689 = 6.149 < 7.994] w=0.100 to align_constraints # Constraint # added constraint: constraint((T0492)T34.CB, (T0492)I70.CB) [> 4.311 = 7.185 < 9.340] w=0.100 to align_constraints # Constraint # added constraint: constraint((T0492)G36.CA, (T0492)I53.CB) [> 4.029 = 6.714 < 8.728] w=0.100 to align_constraints # Constraint # added constraint: constraint((T0492)E38.CB, (T0492)R56.CB) [> 3.883 = 6.471 < 8.413] w=0.100 to align_constraints # Constraint # added constraint: constraint((T0492)I39.CB, (T0492)R56.CB) [> 4.477 = 7.461 < 9.699] w=0.100 to align_constraints # Constraint # added constraint: constraint((T0492)A7.CB, (T0492)Q52.CB) [> 4.412 = 7.353 < 9.559] w=0.056 to align_constraints # Constraint # added constraint: constraint((T0492)D6.CB, (T0492)E59.CB) [> 4.581 = 7.635 < 9.925] w=0.056 to align_constraints # Constraint # added constraint: constraint((T0492)R5.CB, (T0492)G57.CA) [> 3.828 = 6.381 < 8.295] w=0.056 to align_constraints # Constraint # added constraint: constraint((T0492)R5.CB, (T0492)Q52.CB) [> 4.749 = 7.915 < 10.290] w=0.056 to align_constraints # Constraint # added constraint: constraint((T0492)R5.CB, (T0492)K43.CB) [> 4.466 = 7.443 < 9.676] w=0.056 to align_constraints # Constraint # added constraint: constraint((T0492)S3.CB, (T0492)G57.CA) [> 4.297 = 7.161 < 9.309] w=0.056 to align_constraints # Constraint # added constraint: constraint((T0492)S3.CB, (T0492)N54.CB) [> 4.678 = 7.796 < 10.135] w=0.056 to align_constraints # Constraint # added constraint: constraint((T0492)V13.CB, (T0492)I70.CB) [> 3.415 = 5.692 < 7.400] w=0.056 to align_constraints # Constraint # added constraint: constraint((T0492)V13.CB, (T0492)I33.CB) [> 3.898 = 6.497 < 8.446] w=0.056 to align_constraints # Constraint # added constraint: constraint((T0492)V13.CB, (T0492)T34.CB) [> 4.195 = 6.991 < 9.088] w=0.056 to align_constraints # Constraint # added constraint: constraint((T0492)V16.CB, (T0492)E38.CB) [> 3.293 = 5.488 < 7.134] w=0.056 to align_constraints # Constraint # added constraint: constraint((T0492)K17.CB, (T0492)T34.CB) [> 3.977 = 6.628 < 8.616] w=0.056 to align_constraints # Constraint # added constraint: constraint((T0492)K17.CB, (T0492)C37.CB) [> 2.941 = 4.902 < 6.373] w=0.056 to align_constraints # Constraint # added constraint: constraint((T0492)R35.CB, (T0492)V55.CB) [> 3.363 = 5.604 < 7.286] w=0.054 to align_constraints # Constraint # added constraint: constraint((T0492)G36.CA, (T0492)N54.CB) [> 3.403 = 5.671 < 7.372] w=0.054 to align_constraints # Constraint # added constraint: constraint((T0492)I39.CB, (T0492)Q52.CB) [> 3.866 = 6.443 < 8.376] w=0.054 to align_constraints # Constraint # added constraint: constraint((T0492)Y40.CB, (T0492)P50.CB) [> 3.377 = 5.628 < 7.317] w=0.054 to align_constraints # Constraint # added constraint: constraint((T0492)Y40.CB, (T0492)Q52.CB) [> 3.373 = 5.621 < 7.307] w=0.054 to align_constraints # Constraint # added constraint: constraint((T0492)I41.CB, (T0492)P50.CB) [> 4.135 = 6.892 < 8.959] w=0.054 to align_constraints # Constraint # added constraint: constraint((T0492)F2.CB, (T0492)R27.CB) [> 4.192 = 6.986 < 9.082] w=0.011 to align_constraints # Constraint # added constraint: constraint((T0492)A7.CB, (T0492)R27.CB) [> 4.405 = 7.341 < 9.544] w=0.006 to align_constraints # future Constraint commands -> align_bonus # future HelixConstraint commands -> align_bonus # future StrandConstraint commands -> align_bonus # future SheetConstraint commands -> align_bonus # future Hbond commands -> align_bonus # future SSbond commands -> align_bonus Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/T0492align_bonus.constraints or /projects/compbio/experiments/protein-predict/casp8/T0492align_bonus.constraints.gz for input Trying align_bonus.constraints # reading script from file align_bonus.constraints # Constraint # added constraint: bonus constraint((T0492)I41.CB, (T0492)I53.CB) [> 3.468 = 5.780 < 7.514] w=1.000 to align_bonus # Constraint # added constraint: bonus constraint((T0492)I41.CB, (T0492)Q52.CB) [> 4.427 = 7.379 < 9.592] w=1.000 to align_bonus # Constraint # added constraint: bonus constraint((T0492)I39.CB, (T0492)V55.CB) [> 3.457 = 5.762 < 7.490] w=1.000 to align_bonus # Constraint # added constraint: bonus constraint((T0492)I39.CB, (T0492)N54.CB) [> 3.970 = 6.617 < 8.603] w=1.000 to align_bonus # Constraint # added constraint: bonus constraint((T0492)I39.CB, (T0492)I53.CB) [> 2.926 = 4.877 < 6.340] w=1.000 to align_bonus # Constraint # added constraint: bonus constraint((T0492)R42.CB, (T0492)N54.CB) [> 3.984 = 6.640 < 8.632] w=0.946 to align_bonus # Constraint # added constraint: bonus constraint((T0492)R42.CB, (T0492)Q52.CB) [> 3.175 = 5.292 < 6.880] w=0.946 to align_bonus # Constraint # added constraint: bonus constraint((T0492)I41.CB, (T0492)N54.CB) [> 4.453 = 7.422 < 9.648] w=0.946 to align_bonus # Constraint # added constraint: bonus constraint((T0492)Y40.CB, (T0492)I53.CB) [> 4.134 = 6.890 < 8.957] w=0.944 to align_bonus # Constraint # added constraint: bonus constraint((T0492)Y40.CB, (T0492)N54.CB) [> 2.603 = 4.338 < 5.640] w=0.890 to align_bonus # Constraint # added constraint: bonus constraint((T0492)Q52.CB, (T0492)S61.CB) [> 3.015 = 5.025 < 6.533] w=0.890 to align_bonus # Constraint # added constraint: bonus constraint((T0492)I51.CB, (T0492)A67.CB) [> 3.611 = 6.018 < 7.823] w=0.777 to align_bonus # Constraint # added constraint: bonus constraint((T0492)I51.CB, (T0492)L62.CB) [> 3.251 = 5.418 < 7.043] w=0.777 to align_bonus # Constraint # added constraint: bonus constraint((T0492)Y40.CB, (T0492)V55.CB) [> 4.525 = 7.542 < 9.804] w=0.720 to align_bonus # Constraint # added constraint: bonus constraint((T0492)I39.CB, (T0492)V72.CB) [> 4.498 = 7.496 < 9.745] w=0.720 to align_bonus # Constraint # added constraint: bonus constraint((T0492)I53.CB, (T0492)L62.CB) [> 3.575 = 5.959 < 7.746] w=0.720 to align_bonus # Constraint # added constraint: bonus constraint((T0492)Q52.CB, (T0492)L62.CB) [> 4.236 = 7.061 < 9.179] w=0.720 to align_bonus # Constraint # added constraint: bonus constraint((T0492)T12.CB, (T0492)I39.CB) [> 4.277 = 7.128 < 9.266] w=0.720 to align_bonus # Constraint # added constraint: bonus constraint((T0492)V13.CB, (T0492)I39.CB) [> 3.610 = 6.017 < 7.822] w=0.720 to align_bonus # Constraint # added constraint: bonus constraint((T0492)K14.CB, (T0492)G36.CA) [> 3.570 = 5.950 < 7.735] w=0.720 to align_bonus # Constraint # added constraint: bonus constraint((T0492)V15.CB, (T0492)R35.CB) [> 3.478 = 5.797 < 7.537] w=0.720 to align_bonus # Constraint # added constraint: bonus constraint((T0492)K14.CB, (T0492)E38.CB) [> 3.212 = 5.353 < 6.958] w=0.720 to align_bonus # Constraint # added constraint: bonus constraint((T0492)V13.CB, (T0492)I41.CB) [> 3.637 = 6.062 < 7.881] w=0.720 to align_bonus # Constraint # added constraint: bonus constraint((T0492)C37.CB, (T0492)V55.CB) [> 4.519 = 7.532 < 9.792] w=0.718 to align_bonus # Constraint # added constraint: bonus constraint((T0492)I51.CB, (T0492)S61.CB) [> 4.116 = 6.860 < 8.918] w=0.677 to align_bonus # Constraint # added constraint: bonus constraint((T0492)V13.CB, (T0492)V72.CB) [> 2.893 = 4.821 < 6.267] w=0.664 to align_bonus # Constraint # added constraint: bonus constraint((T0492)K14.CB, (T0492)V72.CB) [> 3.845 = 6.409 < 8.332] w=0.664 to align_bonus # Constraint # added constraint: bonus constraint((T0492)K14.CB, (T0492)E73.CB) [> 2.934 = 4.890 < 6.357] w=0.664 to align_bonus # Constraint # added constraint: bonus constraint((T0492)V15.CB, (T0492)I70.CB) [> 3.862 = 6.436 < 8.367] w=0.664 to align_bonus # Constraint # added constraint: bonus constraint((T0492)V16.CB, (T0492)E71.CB) [> 3.025 = 5.042 < 6.554] w=0.664 to align_bonus # Constraint # added constraint: bonus constraint((T0492)H19.CB, (T0492)M69.CB) [> 3.814 = 6.357 < 8.265] w=0.664 to align_bonus # Constraint # added constraint: bonus constraint((T0492)T12.CB, (T0492)Y40.CB) [> 3.059 = 5.099 < 6.628] w=0.664 to align_bonus # Constraint # added constraint: bonus constraint((T0492)V13.CB, (T0492)Y40.CB) [> 4.294 = 7.156 < 9.303] w=0.664 to align_bonus # Constraint # added constraint: bonus constraint((T0492)K14.CB, (T0492)I39.CB) [> 4.265 = 7.108 < 9.240] w=0.664 to align_bonus # Constraint # added constraint: bonus constraint((T0492)V15.CB, (T0492)I39.CB) [> 3.752 = 6.253 < 8.129] w=0.664 to align_bonus # Constraint # added constraint: bonus constraint((T0492)V15.CB, (T0492)V72.CB) [> 3.514 = 5.856 < 7.613] w=0.664 to align_bonus # Constraint # added constraint: bonus constraint((T0492)V16.CB, (T0492)V72.CB) [> 3.746 = 6.243 < 8.117] w=0.664 to align_bonus # Constraint # added constraint: bonus constraint((T0492)V16.CB, (T0492)E73.CB) [> 3.078 = 5.130 < 6.669] w=0.664 to align_bonus # Constraint # added constraint: bonus constraint((T0492)K17.CB, (T0492)I70.CB) [> 3.635 = 6.059 < 7.876] w=0.664 to align_bonus # Constraint # added constraint: bonus constraint((T0492)V15.CB, (T0492)G36.CA) [> 3.130 = 5.217 < 6.782] w=0.664 to align_bonus # Constraint # added constraint: bonus constraint((T0492)I41.CB, (T0492)I51.CB) [> 3.647 = 6.078 < 7.901] w=0.662 to align_bonus # Constraint # added constraint: bonus constraint((T0492)V13.CB, (T0492)E38.CB) [> 4.257 = 7.094 < 9.222] w=0.620 to align_bonus # Constraint # added constraint: bonus constraint((T0492)T12.CB, (T0492)E38.CB) [> 3.713 = 6.189 < 8.045] w=0.620 to align_bonus # Constraint # added constraint: bonus constraint((T0492)V15.CB, (T0492)E38.CB) [> 4.425 = 7.375 < 9.587] w=0.620 to align_bonus # Constraint # added constraint: bonus constraint((T0492)I51.CB, (T0492)R63.CB) [> 4.475 = 7.458 < 9.695] w=0.608 to align_bonus # Constraint # added constraint: bonus constraint((T0492)Q11.CB, (T0492)I41.CB) [> 3.610 = 6.016 < 7.821] w=0.574 to align_bonus # Constraint # added constraint: bonus constraint((T0492)V16.CB, (T0492)R35.CB) [> 3.732 = 6.220 < 8.086] w=0.551 to align_bonus # Constraint # added constraint: bonus constraint((T0492)V15.CB, (T0492)C37.CB) [> 2.980 = 4.966 < 6.456] w=0.551 to align_bonus # Constraint # added constraint: bonus constraint((T0492)K14.CB, (T0492)C37.CB) [> 3.726 = 6.210 < 8.073] w=0.551 to align_bonus # Constraint # added constraint: bonus constraint((T0492)L18.CB, (T0492)I70.CB) [> 3.392 = 5.654 < 7.350] w=0.551 to align_bonus # Constraint # added constraint: bonus constraint((T0492)M31.CB, (T0492)L60.CB) [> 3.769 = 6.281 < 8.165] w=0.551 to align_bonus # Constraint # added constraint: bonus constraint((T0492)G48.CA, (T0492)K64.CB) [> 3.547 = 5.912 < 7.686] w=0.507 to align_bonus # Constraint # added constraint: bonus constraint((T0492)T12.CB, (T0492)I41.CB) [> 4.465 = 7.442 < 9.674] w=0.507 to align_bonus # Constraint # added constraint: bonus constraint((T0492)M31.CB, (T0492)V55.CB) [> 3.366 = 5.611 < 7.294] w=0.507 to align_bonus # Constraint # added constraint: bonus constraint((T0492)V15.CB, (T0492)E71.CB) [> 4.296 = 7.160 < 9.308] w=0.495 to align_bonus # Constraint # added constraint: bonus constraint((T0492)R42.CB, (T0492)I51.CB) [> 4.300 = 7.167 < 9.317] w=0.493 to align_bonus # Constraint # added constraint: bonus constraint((T0492)I33.CB, (T0492)V55.CB) [> 3.982 = 6.637 < 8.629] w=0.493 to align_bonus # Constraint # added constraint: bonus constraint((T0492)E38.CB, (T0492)V55.CB) [> 4.374 = 7.289 < 9.476] w=0.493 to align_bonus # Constraint # added constraint: bonus constraint((T0492)M31.CB, (T0492)Y58.CB) [> 3.107 = 5.178 < 6.731] w=0.451 to align_bonus # Constraint # added constraint: bonus constraint((T0492)V15.CB, (T0492)I33.CB) [> 3.609 = 6.015 < 7.819] w=0.449 to align_bonus # Constraint # added constraint: bonus constraint((T0492)D49.CB, (T0492)K64.CB) [> 3.114 = 5.191 < 6.748] w=0.439 to align_bonus # Constraint # added constraint: bonus constraint((T0492)L18.CB, (T0492)M69.CB) [> 4.109 = 6.849 < 8.904] w=0.439 to align_bonus # Constraint # added constraint: bonus constraint((T0492)Q11.CB, (T0492)R42.CB) [> 4.441 = 7.402 < 9.622] w=0.405 to align_bonus # Constraint # added constraint: bonus constraint((T0492)L18.CB, (T0492)I28.CB) [> 4.164 = 6.939 < 9.021] w=0.395 to align_bonus # Constraint # added constraint: bonus constraint((T0492)H19.CB, (T0492)I70.CB) [> 4.173 = 6.954 < 9.041] w=0.382 to align_bonus # Constraint # added constraint: bonus constraint((T0492)I28.CB, (T0492)L60.CB) [> 3.770 = 6.283 < 8.168] w=0.382 to align_bonus # Constraint # added constraint: bonus constraint((T0492)K43.CB, (T0492)Q52.CB) [> 3.709 = 6.181 < 8.036] w=0.372 to align_bonus # Constraint # added constraint: bonus constraint((T0492)G10.CA, (T0492)I41.CB) [> 3.543 = 5.906 < 7.677] w=0.372 to align_bonus # Constraint # added constraint: bonus constraint((T0492)C9.CB, (T0492)I41.CB) [> 3.192 = 5.320 < 6.916] w=0.338 to align_bonus # Constraint # added constraint: bonus constraint((T0492)G20.CA, (T0492)M69.CB) [> 3.148 = 5.246 < 6.820] w=0.338 to align_bonus # Constraint # added constraint: bonus constraint((T0492)L24.CB, (T0492)M69.CB) [> 3.643 = 6.072 < 7.893] w=0.338 to align_bonus # Constraint # added constraint: bonus constraint((T0492)I39.CB, (T0492)L60.CB) [> 4.346 = 7.243 < 9.416] w=0.338 to align_bonus # Constraint # added constraint: bonus constraint((T0492)R42.CB, (T0492)I53.CB) [> 4.178 = 6.963 < 9.052] w=0.338 to align_bonus # Constraint # added constraint: bonus constraint((T0492)R42.CB, (T0492)E59.CB) [> 4.314 = 7.190 < 9.347] w=0.338 to align_bonus # Constraint # added constraint: bonus constraint((T0492)P50.CB, (T0492)R63.CB) [> 3.531 = 5.886 < 7.651] w=0.338 to align_bonus # Constraint # added constraint: bonus constraint((T0492)P50.CB, (T0492)L62.CB) [> 4.155 = 6.925 < 9.003] w=0.338 to align_bonus # Constraint # added constraint: bonus constraint((T0492)P50.CB, (T0492)S61.CB) [> 3.676 = 6.126 < 7.964] w=0.338 to align_bonus # Constraint # added constraint: bonus constraint((T0492)C9.CB, (T0492)K43.CB) [> 2.621 = 4.368 < 5.679] w=0.338 to align_bonus # Constraint # added constraint: bonus constraint((T0492)A7.CB, (T0492)V72.CB) [> 4.691 = 7.818 < 10.163] w=0.338 to align_bonus # Constraint # added constraint: bonus constraint((T0492)A7.CB, (T0492)I51.CB) [> 4.239 = 7.064 < 9.183] w=0.338 to align_bonus # Constraint # added constraint: bonus constraint((T0492)M31.CB, (T0492)I53.CB) [> 4.565 = 7.609 < 9.892] w=0.338 to align_bonus # Constraint # added constraint: bonus constraint((T0492)V15.CB, (T0492)T34.CB) [> 4.064 = 6.773 < 8.805] w=0.326 to align_bonus # Constraint # added constraint: bonus constraint((T0492)G36.CA, (T0492)V55.CB) [> 4.017 = 6.695 < 8.703] w=0.323 to align_bonus # Constraint # added constraint: bonus constraint((T0492)T21.CB, (T0492)A66.CB) [> 4.357 = 7.262 < 9.441] w=0.315 to align_bonus # Constraint # added constraint: bonus constraint((T0492)Q11.CB, (T0492)Y40.CB) [> 4.023 = 6.705 < 8.717] w=0.292 to align_bonus # Constraint # added constraint: bonus constraint((T0492)C9.CB, (T0492)R42.CB) [> 3.579 = 5.966 < 7.755] w=0.282 to align_bonus # Constraint # added constraint: bonus constraint((T0492)K8.CB, (T0492)K43.CB) [> 4.336 = 7.227 < 9.395] w=0.282 to align_bonus # Constraint # added constraint: bonus constraint((T0492)L24.CB, (T0492)L60.CB) [> 4.427 = 7.378 < 9.592] w=0.282 to align_bonus # Constraint # added constraint: bonus constraint((T0492)L24.CB, (T0492)L62.CB) [> 4.430 = 7.383 < 9.598] w=0.282 to align_bonus # Constraint # added constraint: bonus constraint((T0492)R27.CB, (T0492)L60.CB) [> 3.221 = 5.369 < 6.980] w=0.282 to align_bonus # Constraint # added constraint: bonus constraint((T0492)V44.CB, (T0492)S61.CB) [> 4.114 = 6.856 < 8.913] w=0.282 to align_bonus # Constraint # added constraint: bonus constraint((T0492)V15.CB, (T0492)E73.CB) [> 4.502 = 7.504 < 9.755] w=0.270 to align_bonus # Constraint # added constraint: bonus constraint((T0492)V16.CB, (T0492)I70.CB) [> 4.155 = 6.925 < 9.003] w=0.226 to align_bonus # Constraint # added constraint: bonus constraint((T0492)V16.CB, (T0492)C37.CB) [> 4.400 = 7.334 < 9.534] w=0.226 to align_bonus # Constraint # added constraint: bonus constraint((T0492)D30.CB, (T0492)Y58.CB) [> 4.353 = 7.255 < 9.431] w=0.225 to align_bonus # Constraint # added constraint: bonus constraint((T0492)L18.CB, (T0492)T34.CB) [> 3.471 = 5.784 < 7.520] w=0.213 to align_bonus # Constraint # added constraint: bonus constraint((T0492)L24.CB, (T0492)R63.CB) [> 4.092 = 6.821 < 8.867] w=0.213 to align_bonus # Constraint # added constraint: bonus constraint((T0492)A7.CB, (T0492)V44.CB) [> 2.834 = 4.724 < 6.141] w=0.169 to align_bonus # Constraint # added constraint: bonus constraint((T0492)K8.CB, (T0492)V44.CB) [> 3.741 = 6.235 < 8.105] w=0.169 to align_bonus # Constraint # added constraint: bonus constraint((T0492)C9.CB, (T0492)V44.CB) [> 3.478 = 5.797 < 7.536] w=0.169 to align_bonus # Constraint # added constraint: bonus constraint((T0492)V13.CB, (T0492)I53.CB) [> 4.629 = 7.715 < 10.029] w=0.169 to align_bonus # Constraint # added constraint: bonus constraint((T0492)L24.CB, (T0492)I70.CB) [> 4.397 = 7.329 < 9.528] w=0.169 to align_bonus # Constraint # added constraint: bonus constraint((T0492)I33.CB, (T0492)R56.CB) [> 4.668 = 7.780 < 10.114] w=0.169 to align_bonus # Constraint # added constraint: bonus constraint((T0492)I51.CB, (T0492)L60.CB) [> 4.605 = 7.675 < 9.977] w=0.169 to align_bonus # Constraint # added constraint: bonus constraint((T0492)I33.CB, (T0492)I70.CB) [> 3.804 = 6.340 < 8.242] w=0.169 to align_bonus # Constraint # added constraint: bonus constraint((T0492)I28.CB, (T0492)I70.CB) [> 4.417 = 7.361 < 9.569] w=0.169 to align_bonus # Constraint # added constraint: bonus constraint((T0492)I28.CB, (T0492)A66.CB) [> 4.680 = 7.800 < 10.140] w=0.169 to align_bonus # Constraint # added constraint: bonus constraint((T0492)G20.CA, (T0492)E68.CB) [> 4.790 = 7.983 < 10.378] w=0.169 to align_bonus # Constraint # added constraint: bonus constraint((T0492)A45.CB, (T0492)K64.CB) [> 4.210 = 7.017 < 9.123] w=0.169 to align_bonus # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)A67.CB) [> 2.476 = 4.127 < 5.365] w=0.169 to align_bonus # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)L62.CB) [> 4.071 = 6.785 < 8.820] w=0.169 to align_bonus # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)I51.CB) [> 2.970 = 4.950 < 6.435] w=0.169 to align_bonus # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)I41.CB) [> 3.739 = 6.231 < 8.101] w=0.169 to align_bonus # Constraint # added constraint: bonus constraint((T0492)S3.CB, (T0492)V72.CB) [> 4.722 = 7.870 < 10.231] w=0.169 to align_bonus # Constraint # added constraint: bonus constraint((T0492)S3.CB, (T0492)I70.CB) [> 4.238 = 7.064 < 9.183] w=0.169 to align_bonus # Constraint # added constraint: bonus constraint((T0492)F2.CB, (T0492)V72.CB) [> 3.682 = 6.137 < 7.979] w=0.169 to align_bonus # Constraint # added constraint: bonus constraint((T0492)F2.CB, (T0492)E71.CB) [> 4.298 = 7.163 < 9.312] w=0.169 to align_bonus # Constraint # added constraint: bonus constraint((T0492)P50.CB, (T0492)A67.CB) [> 4.020 = 6.701 < 8.711] w=0.169 to align_bonus # Constraint # added constraint: bonus constraint((T0492)D49.CB, (T0492)A67.CB) [> 4.195 = 6.991 < 9.088] w=0.169 to align_bonus # Constraint # added constraint: bonus constraint((T0492)I33.CB, (T0492)L60.CB) [> 4.200 = 7.000 < 9.100] w=0.169 to align_bonus # Constraint # added constraint: bonus constraint((T0492)I33.CB, (T0492)I53.CB) [> 3.543 = 5.905 < 7.676] w=0.169 to align_bonus # Constraint # added constraint: bonus constraint((T0492)G32.CA, (T0492)V55.CB) [> 3.931 = 6.552 < 8.518] w=0.169 to align_bonus # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)V72.CB) [> 3.732 = 6.219 < 8.085] w=0.169 to align_bonus # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)E71.CB) [> 4.661 = 7.768 < 10.098] w=0.169 to align_bonus # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)I70.CB) [> 3.036 = 5.060 < 6.578] w=0.169 to align_bonus # Constraint # added constraint: bonus constraint((T0492)I53.CB, (T0492)A67.CB) [> 4.085 = 6.808 < 8.851] w=0.169 to align_bonus # Constraint # added constraint: bonus constraint((T0492)K14.CB, (T0492)R35.CB) [> 4.202 = 7.004 < 9.105] w=0.157 to align_bonus # Constraint # added constraint: bonus constraint((T0492)L18.CB, (T0492)G36.CA) [> 4.184 = 6.973 < 9.065] w=0.157 to align_bonus # Constraint # added constraint: bonus constraint((T0492)D6.CB, (T0492)P46.CB) [> 3.794 = 6.323 < 8.219] w=0.113 to align_bonus # Constraint # added constraint: bonus constraint((T0492)K17.CB, (T0492)I28.CB) [> 3.736 = 6.227 < 8.096] w=0.113 to align_bonus # Constraint # added constraint: bonus constraint((T0492)G32.CA, (T0492)Y58.CB) [> 4.461 = 7.435 < 9.665] w=0.113 to align_bonus # Constraint # added constraint: bonus constraint((T0492)V13.CB, (T0492)C37.CB) [> 3.374 = 5.623 < 7.310] w=0.113 to align_bonus # Constraint # added constraint: bonus constraint((T0492)Q11.CB, (T0492)I39.CB) [> 3.672 = 6.119 < 7.955] w=0.113 to align_bonus # Constraint # added constraint: bonus constraint((T0492)G20.CA, (T0492)S65.CB) [> 4.101 = 6.836 < 8.886] w=0.113 to align_bonus # Constraint # added constraint: bonus constraint((T0492)M31.CB, (T0492)E59.CB) [> 4.385 = 7.309 < 9.502] w=0.113 to align_bonus # Constraint # added constraint: bonus constraint((T0492)E38.CB, (T0492)N54.CB) [> 3.655 = 6.091 < 7.918] w=0.110 to align_bonus # Constraint # added constraint: bonus constraint((T0492)E38.CB, (T0492)I53.CB) [> 3.427 = 5.711 < 7.425] w=0.110 to align_bonus # Constraint # added constraint: bonus constraint((T0492)L18.CB, (T0492)M29.CB) [> 4.412 = 7.353 < 9.559] w=0.100 to align_bonus # Constraint # added constraint: bonus constraint((T0492)K25.CB, (T0492)L62.CB) [> 4.250 = 7.083 < 9.208] w=0.100 to align_bonus # Constraint # added constraint: bonus constraint((T0492)K25.CB, (T0492)R63.CB) [> 3.924 = 6.539 < 8.501] w=0.100 to align_bonus # Constraint # added constraint: bonus constraint((T0492)I28.CB, (T0492)L62.CB) [> 3.689 = 6.149 < 7.994] w=0.100 to align_bonus # Constraint # added constraint: bonus constraint((T0492)T34.CB, (T0492)I70.CB) [> 4.311 = 7.185 < 9.340] w=0.100 to align_bonus # Constraint # added constraint: bonus constraint((T0492)G36.CA, (T0492)I53.CB) [> 4.029 = 6.714 < 8.728] w=0.100 to align_bonus # Constraint # added constraint: bonus constraint((T0492)E38.CB, (T0492)R56.CB) [> 3.883 = 6.471 < 8.413] w=0.100 to align_bonus # Constraint # added constraint: bonus constraint((T0492)I39.CB, (T0492)R56.CB) [> 4.477 = 7.461 < 9.699] w=0.100 to align_bonus # Constraint # added constraint: bonus constraint((T0492)A7.CB, (T0492)Q52.CB) [> 4.412 = 7.353 < 9.559] w=0.056 to align_bonus # Constraint # added constraint: bonus constraint((T0492)D6.CB, (T0492)E59.CB) [> 4.581 = 7.635 < 9.925] w=0.056 to align_bonus # Constraint # added constraint: bonus constraint((T0492)R5.CB, (T0492)G57.CA) [> 3.828 = 6.381 < 8.295] w=0.056 to align_bonus # Constraint # added constraint: bonus constraint((T0492)R5.CB, (T0492)Q52.CB) [> 4.749 = 7.915 < 10.290] w=0.056 to align_bonus # Constraint # added constraint: bonus constraint((T0492)R5.CB, (T0492)K43.CB) [> 4.466 = 7.443 < 9.676] w=0.056 to align_bonus # Constraint # added constraint: bonus constraint((T0492)S3.CB, (T0492)G57.CA) [> 4.297 = 7.161 < 9.309] w=0.056 to align_bonus # Constraint # added constraint: bonus constraint((T0492)S3.CB, (T0492)N54.CB) [> 4.678 = 7.796 < 10.135] w=0.056 to align_bonus # Constraint # added constraint: bonus constraint((T0492)V13.CB, (T0492)I70.CB) [> 3.415 = 5.692 < 7.400] w=0.056 to align_bonus # Constraint # added constraint: bonus constraint((T0492)V13.CB, (T0492)I33.CB) [> 3.898 = 6.497 < 8.446] w=0.056 to align_bonus # Constraint # added constraint: bonus constraint((T0492)V13.CB, (T0492)T34.CB) [> 4.195 = 6.991 < 9.088] w=0.056 to align_bonus # Constraint # added constraint: bonus constraint((T0492)V16.CB, (T0492)E38.CB) [> 3.293 = 5.488 < 7.134] w=0.056 to align_bonus # Constraint # added constraint: bonus constraint((T0492)K17.CB, (T0492)T34.CB) [> 3.977 = 6.628 < 8.616] w=0.056 to align_bonus # Constraint # added constraint: bonus constraint((T0492)K17.CB, (T0492)C37.CB) [> 2.941 = 4.902 < 6.373] w=0.056 to align_bonus # Constraint # added constraint: bonus constraint((T0492)R35.CB, (T0492)V55.CB) [> 3.363 = 5.604 < 7.286] w=0.054 to align_bonus # Constraint # added constraint: bonus constraint((T0492)G36.CA, (T0492)N54.CB) [> 3.403 = 5.671 < 7.372] w=0.054 to align_bonus # Constraint # added constraint: bonus constraint((T0492)I39.CB, (T0492)Q52.CB) [> 3.866 = 6.443 < 8.376] w=0.054 to align_bonus # Constraint # added constraint: bonus constraint((T0492)Y40.CB, (T0492)P50.CB) [> 3.377 = 5.628 < 7.317] w=0.054 to align_bonus # Constraint # added constraint: bonus constraint((T0492)Y40.CB, (T0492)Q52.CB) [> 3.373 = 5.621 < 7.307] w=0.054 to align_bonus # Constraint # added constraint: bonus constraint((T0492)I41.CB, (T0492)P50.CB) [> 4.135 = 6.892 < 8.959] w=0.054 to align_bonus # Constraint # added constraint: bonus constraint((T0492)F2.CB, (T0492)R27.CB) [> 4.192 = 6.986 < 9.082] w=0.011 to align_bonus # Constraint # added constraint: bonus constraint((T0492)A7.CB, (T0492)R27.CB) [> 4.405 = 7.341 < 9.544] w=0.006 to align_bonus # future Constraint commands -> rejected_constraints # future HelixConstraint commands -> rejected_constraints # future StrandConstraint commands -> rejected_constraints # future SheetConstraint commands -> rejected_constraints # future Hbond commands -> rejected_constraints # future SSbond commands -> rejected_constraints Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/T0492rejected.constraints or /projects/compbio/experiments/protein-predict/casp8/T0492rejected.constraints.gz for input Trying rejected.constraints # reading script from file rejected.constraints # Constraint # added constraint: constraint((T0492)V13.CB, (T0492)E73.CB) [> 4.037 = 6.729 < 8.748] w=0.664 to rejected_constraints # Constraint # added constraint: constraint((T0492)K17.CB, (T0492)E71.CB) [> 2.896 = 4.827 < 6.275] w=0.664 to rejected_constraints # Constraint # added constraint: constraint((T0492)I51.CB, (T0492)K64.CB) [> 4.116 = 6.860 < 8.918] w=0.608 to rejected_constraints # Constraint # added constraint: constraint((T0492)L18.CB, (T0492)E71.CB) [> 3.912 = 6.519 < 8.475] w=0.507 to rejected_constraints # Constraint # added constraint: constraint((T0492)L18.CB, (T0492)R35.CB) [> 3.869 = 6.448 < 8.383] w=0.495 to rejected_constraints # Constraint # added constraint: constraint((T0492)K17.CB, (T0492)R35.CB) [> 3.848 = 6.413 < 8.338] w=0.495 to rejected_constraints # Constraint # added constraint: constraint((T0492)V16.CB, (T0492)G36.CA) [> 3.590 = 5.983 < 7.778] w=0.451 to rejected_constraints # Constraint # added constraint: constraint((T0492)L24.CB, (T0492)A66.CB) [> 3.946 = 6.576 < 8.549] w=0.451 to rejected_constraints # Constraint # added constraint: constraint((T0492)P50.CB, (T0492)K64.CB) [> 4.062 = 6.771 < 8.802] w=0.439 to rejected_constraints # Constraint # added constraint: constraint((T0492)A7.CB, (T0492)I41.CB) [> 3.580 = 5.967 < 7.757] w=0.395 to rejected_constraints # Constraint # added constraint: constraint((T0492)H19.CB, (T0492)E71.CB) [> 4.079 = 6.798 < 8.838] w=0.382 to rejected_constraints # Constraint # added constraint: constraint((T0492)G10.CA, (T0492)Y40.CB) [> 4.149 = 6.915 < 8.990] w=0.372 to rejected_constraints # Constraint # added constraint: constraint((T0492)H19.CB, (T0492)E68.CB) [> 4.064 = 6.774 < 8.806] w=0.282 to rejected_constraints # Constraint # added constraint: constraint((T0492)K17.CB, (T0492)M69.CB) [> 4.198 = 6.997 < 9.097] w=0.282 to rejected_constraints # Constraint # added constraint: constraint((T0492)I41.CB, (T0492)V72.CB) [> 4.261 = 7.102 < 9.232] w=0.282 to rejected_constraints # Constraint # added constraint: constraint((T0492)I41.CB, (T0492)A67.CB) [> 4.626 = 7.710 < 10.024] w=0.269 to rejected_constraints # Constraint # added constraint: constraint((T0492)K8.CB, (T0492)I41.CB) [> 3.850 = 6.417 < 8.342] w=0.226 to rejected_constraints # Constraint # added constraint: constraint((T0492)A7.CB, (T0492)K43.CB) [> 3.875 = 6.459 < 8.397] w=0.226 to rejected_constraints # Constraint # added constraint: constraint((T0492)G10.CA, (T0492)R42.CB) [> 3.764 = 6.274 < 8.156] w=0.203 to rejected_constraints # Constraint # added constraint: constraint((T0492)A7.CB, (T0492)A67.CB) [> 4.597 = 7.662 < 9.961] w=0.169 to rejected_constraints # Constraint # added constraint: constraint((T0492)C9.CB, (T0492)I51.CB) [> 4.658 = 7.763 < 10.092] w=0.169 to rejected_constraints # Constraint # added constraint: constraint((T0492)V15.CB, (T0492)I28.CB) [> 4.676 = 7.794 < 10.132] w=0.169 to rejected_constraints # Constraint # added constraint: constraint((T0492)V15.CB, (T0492)I53.CB) [> 4.454 = 7.423 < 9.649] w=0.169 to rejected_constraints # Constraint # added constraint: constraint((T0492)G36.CA, (T0492)E73.CB) [> 4.296 = 7.160 < 9.308] w=0.169 to rejected_constraints # Constraint # added constraint: constraint((T0492)V44.CB, (T0492)K64.CB) [> 4.408 = 7.347 < 9.551] w=0.169 to rejected_constraints # Constraint # added constraint: constraint((T0492)I39.CB, (T0492)I51.CB) [> 4.369 = 7.281 < 9.465] w=0.169 to rejected_constraints # Constraint # added constraint: constraint((T0492)I33.CB, (T0492)M69.CB) [> 4.657 = 7.761 < 10.089] w=0.169 to rejected_constraints # Constraint # added constraint: constraint((T0492)I28.CB, (T0492)M69.CB) [> 3.432 = 5.720 < 7.436] w=0.169 to rejected_constraints # Constraint # added constraint: constraint((T0492)K25.CB, (T0492)M69.CB) [> 4.598 = 7.663 < 9.962] w=0.169 to rejected_constraints # Constraint # added constraint: constraint((T0492)C9.CB, (T0492)Y40.CB) [> 3.480 = 5.799 < 7.539] w=0.169 to rejected_constraints # Constraint # added constraint: constraint((T0492)G48.CA, (T0492)S65.CB) [> 4.644 = 7.740 < 10.062] w=0.169 to rejected_constraints # Constraint # added constraint: constraint((T0492)L4.CB, (T0492)E68.CB) [> 4.490 = 7.483 < 9.728] w=0.169 to rejected_constraints # Constraint # added constraint: constraint((T0492)S3.CB, (T0492)E71.CB) [> 3.444 = 5.740 < 7.462] w=0.169 to rejected_constraints # Constraint # added constraint: constraint((T0492)S3.CB, (T0492)E68.CB) [> 3.596 = 5.993 < 7.791] w=0.169 to rejected_constraints # Constraint # added constraint: constraint((T0492)S3.CB, (T0492)A67.CB) [> 4.386 = 7.311 < 9.504] w=0.169 to rejected_constraints # Constraint # added constraint: constraint((T0492)F2.CB, (T0492)E73.CB) [> 4.395 = 7.326 < 9.524] w=0.169 to rejected_constraints # Constraint # added constraint: constraint((T0492)G10.CA, (T0492)K43.CB) [> 3.681 = 6.135 < 7.976] w=0.169 to rejected_constraints # Constraint # added constraint: constraint((T0492)R5.CB, (T0492)E68.CB) [> 2.976 = 4.959 < 6.447] w=0.169 to rejected_constraints # Constraint # added constraint: constraint((T0492)R5.CB, (T0492)A67.CB) [> 2.810 = 4.684 < 6.089] w=0.169 to rejected_constraints # Constraint # added constraint: constraint((T0492)R5.CB, (T0492)K64.CB) [> 3.877 = 6.461 < 8.400] w=0.169 to rejected_constraints # Constraint # added constraint: constraint((T0492)R5.CB, (T0492)I51.CB) [> 4.484 = 7.473 < 9.715] w=0.169 to rejected_constraints # Constraint # added constraint: constraint((T0492)R5.CB, (T0492)D49.CB) [> 4.040 = 6.734 < 8.754] w=0.169 to rejected_constraints # Constraint # added constraint: constraint((T0492)R35.CB, (T0492)E71.CB) [> 4.245 = 7.074 < 9.196] w=0.169 to rejected_constraints # Constraint # added constraint: constraint((T0492)M31.CB, (T0492)N54.CB) [> 4.768 = 7.947 < 10.331] w=0.169 to rejected_constraints # Constraint # added constraint: constraint((T0492)K14.CB, (T0492)Y40.CB) [> 4.124 = 6.874 < 8.936] w=0.157 to rejected_constraints # Constraint # added constraint: constraint((T0492)K17.CB, (T0492)V72.CB) [> 3.980 = 6.633 < 8.623] w=0.157 to rejected_constraints # Constraint # added constraint: constraint((T0492)D6.CB, (T0492)V44.CB) [> 4.504 = 7.508 < 9.760] w=0.113 to rejected_constraints # Constraint # added constraint: constraint((T0492)D6.CB, (T0492)R42.CB) [> 3.789 = 6.315 < 8.209] w=0.113 to rejected_constraints # Constraint # added constraint: constraint((T0492)A7.CB, (T0492)R42.CB) [> 3.405 = 5.676 < 7.378] w=0.113 to rejected_constraints # Constraint # added constraint: constraint((T0492)A7.CB, (T0492)N54.CB) [> 4.424 = 7.373 < 9.585] w=0.113 to rejected_constraints # Constraint # added constraint: constraint((T0492)K8.CB, (T0492)R42.CB) [> 3.910 = 6.516 < 8.471] w=0.113 to rejected_constraints # Constraint # added constraint: constraint((T0492)C9.CB, (T0492)N54.CB) [> 4.063 = 6.772 < 8.804] w=0.113 to rejected_constraints # Constraint # added constraint: constraint((T0492)T12.CB, (T0492)C37.CB) [> 3.809 = 6.349 < 8.254] w=0.113 to rejected_constraints # Constraint # added constraint: constraint((T0492)L18.CB, (T0492)A66.CB) [> 4.683 = 7.805 < 10.146] w=0.113 to rejected_constraints # Constraint # added constraint: constraint((T0492)T21.CB, (T0492)R63.CB) [> 3.669 = 6.114 < 7.949] w=0.113 to rejected_constraints # Constraint # added constraint: constraint((T0492)T21.CB, (T0492)S65.CB) [> 3.673 = 6.122 < 7.958] w=0.113 to rejected_constraints # Constraint # added constraint: constraint((T0492)M31.CB, (T0492)R56.CB) [> 4.415 = 7.358 < 9.566] w=0.113 to rejected_constraints # Constraint # added constraint: constraint((T0492)I53.CB, (T0492)I70.CB) [> 4.762 = 7.936 < 10.317] w=0.113 to rejected_constraints # Constraint # added constraint: constraint((T0492)A23.CB, (T0492)R63.CB) [> 4.594 = 7.657 < 9.955] w=0.100 to rejected_constraints # Constraint # added constraint: constraint((T0492)A23.CB, (T0492)S65.CB) [> 4.766 = 7.944 < 10.327] w=0.100 to rejected_constraints # Constraint # added constraint: constraint((T0492)A23.CB, (T0492)A66.CB) [> 4.430 = 7.383 < 9.598] w=0.100 to rejected_constraints # Constraint # added constraint: constraint((T0492)K25.CB, (T0492)A66.CB) [> 2.902 = 4.837 < 6.288] w=0.100 to rejected_constraints # Constraint # added constraint: constraint((T0492)R35.CB, (T0492)I70.CB) [> 3.679 = 6.131 < 7.970] w=0.100 to rejected_constraints # Constraint # added constraint: constraint((T0492)R35.CB, (T0492)V72.CB) [> 4.245 = 7.075 < 9.197] w=0.100 to rejected_constraints # Constraint # added constraint: constraint((T0492)G36.CA, (T0492)I70.CB) [> 4.619 = 7.699 < 10.008] w=0.100 to rejected_constraints # Constraint # added constraint: constraint((T0492)G36.CA, (T0492)V72.CB) [> 4.545 = 7.576 < 9.848] w=0.100 to rejected_constraints # Constraint # added constraint: constraint((T0492)G10.CA, (T0492)E38.CB) [> 3.657 = 6.095 < 7.924] w=0.056 to rejected_constraints # Constraint # added constraint: constraint((T0492)A7.CB, (T0492)Y40.CB) [> 3.033 = 5.056 < 6.572] w=0.056 to rejected_constraints # Constraint # added constraint: constraint((T0492)D6.CB, (T0492)N54.CB) [> 2.349 = 3.915 < 5.089] w=0.056 to rejected_constraints # Constraint # added constraint: constraint((T0492)D6.CB, (T0492)K43.CB) [> 4.448 = 7.414 < 9.638] w=0.056 to rejected_constraints # Constraint # added constraint: constraint((T0492)D6.CB, (T0492)Y40.CB) [> 3.396 = 5.660 < 7.358] w=0.056 to rejected_constraints # Constraint # added constraint: constraint((T0492)R5.CB, (T0492)N54.CB) [> 4.479 = 7.465 < 9.704] w=0.056 to rejected_constraints # Constraint # added constraint: constraint((T0492)R5.CB, (T0492)R42.CB) [> 2.755 = 4.592 < 5.969] w=0.056 to rejected_constraints # Constraint # added constraint: constraint((T0492)L4.CB, (T0492)N54.CB) [> 2.845 = 4.742 < 6.164] w=0.056 to rejected_constraints # Constraint # added constraint: constraint((T0492)L4.CB, (T0492)R42.CB) [> 3.931 = 6.552 < 8.518] w=0.056 to rejected_constraints # Constraint # added constraint: constraint((T0492)L4.CB, (T0492)Y40.CB) [> 3.802 = 6.337 < 8.239] w=0.056 to rejected_constraints # Constraint # added constraint: constraint((T0492)K17.CB, (T0492)E68.CB) [> 3.752 = 6.254 < 8.130] w=0.056 to rejected_constraints # Constraint # added constraint: constraint((T0492)V16.CB, (T0492)M69.CB) [> 3.835 = 6.391 < 8.308] w=0.056 to rejected_constraints # Constraint # added constraint: constraint((T0492)V16.CB, (T0492)I28.CB) [> 4.349 = 7.249 < 9.424] w=0.056 to rejected_constraints # Constraint # added constraint: constraint((T0492)V16.CB, (T0492)K25.CB) [> 3.541 = 5.902 < 7.672] w=0.056 to rejected_constraints # Constraint # added constraint: constraint((T0492)K14.CB, (T0492)E71.CB) [> 3.110 = 5.183 < 6.738] w=0.056 to rejected_constraints # Constraint # added constraint: constraint((T0492)V13.CB, (T0492)E71.CB) [> 4.341 = 7.235 < 9.405] w=0.056 to rejected_constraints # Constraint # added constraint: constraint((T0492)V13.CB, (T0492)G36.CA) [> 3.382 = 5.637 < 7.328] w=0.056 to rejected_constraints # Constraint # added constraint: constraint((T0492)V13.CB, (T0492)R35.CB) [> 3.400 = 5.667 < 7.367] w=0.056 to rejected_constraints # Constraint # added constraint: constraint((T0492)G10.CA, (T0492)I39.CB) [> 3.770 = 6.284 < 8.169] w=0.056 to rejected_constraints # Constraint # added constraint: constraint((T0492)Q11.CB, (T0492)E38.CB) [> 3.957 = 6.594 < 8.573] w=0.056 to rejected_constraints # Constraint # added constraint: constraint((T0492)Q11.CB, (T0492)V72.CB) [> 2.733 = 4.555 < 5.922] w=0.056 to rejected_constraints # Constraint # added constraint: constraint((T0492)Q11.CB, (T0492)E73.CB) [> 4.119 = 6.865 < 8.924] w=0.056 to rejected_constraints # Constraint # added constraint: constraint((T0492)T12.CB, (T0492)G36.CA) [> 3.762 = 6.270 < 8.151] w=0.056 to rejected_constraints # Constraint # added constraint: constraint((T0492)T12.CB, (T0492)V72.CB) [> 4.042 = 6.737 < 8.758] w=0.056 to rejected_constraints # Constraint # added constraint: constraint((T0492)T12.CB, (T0492)E73.CB) [> 2.964 = 4.940 < 6.422] w=0.056 to rejected_constraints # Constraint # added constraint: constraint((T0492)T12.CB, (T0492)R42.CB) [> 2.829 = 4.715 < 6.130] w=0.056 to rejected_constraints # Constraint # added constraint: constraint((T0492)T12.CB, (T0492)N54.CB) [> 3.989 = 6.649 < 8.644] w=0.056 to rejected_constraints # Constraint # added constraint: constraint((T0492)V13.CB, (T0492)R42.CB) [> 4.157 = 6.929 < 9.008] w=0.056 to rejected_constraints # Constraint # added constraint: constraint((T0492)V15.CB, (T0492)Y40.CB) [> 4.462 = 7.437 < 9.669] w=0.056 to rejected_constraints # Constraint # added constraint: constraint((T0492)V15.CB, (T0492)I41.CB) [> 3.349 = 5.582 < 7.256] w=0.056 to rejected_constraints # Constraint # added constraint: constraint((T0492)V16.CB, (T0492)I39.CB) [> 4.539 = 7.565 < 9.835] w=0.056 to rejected_constraints # Constraint # added constraint: constraint((T0492)K17.CB, (T0492)I33.CB) [> 3.187 = 5.311 < 6.905] w=0.056 to rejected_constraints # Constraint # added constraint: constraint((T0492)K17.CB, (T0492)G36.CA) [> 3.251 = 5.418 < 7.043] w=0.056 to rejected_constraints # Constraint # added constraint: constraint((T0492)K17.CB, (T0492)E38.CB) [> 4.792 = 7.987 < 10.384] w=0.056 to rejected_constraints # Constraint # added constraint: constraint((T0492)K17.CB, (T0492)I39.CB) [> 3.615 = 6.026 < 7.833] w=0.056 to rejected_constraints # Constraint # added constraint: constraint((T0492)L18.CB, (T0492)V72.CB) [> 3.488 = 5.814 < 7.558] w=0.056 to rejected_constraints # Constraint # added constraint: constraint((T0492)L18.CB, (T0492)E73.CB) [> 3.461 = 5.769 < 7.499] w=0.056 to rejected_constraints # Constraint # added constraint: constraint((T0492)H19.CB, (T0492)R35.CB) [> 4.641 = 7.735 < 10.056] w=0.056 to rejected_constraints # Constraint # added constraint: constraint((T0492)V13.CB, (T0492)M31.CB) [> 4.678 = 7.797 < 10.136] w=0.054 to rejected_constraints # Constraint # added constraint: constraint((T0492)K14.CB, (T0492)L24.CB) [> 3.945 = 6.575 < 8.548] w=0.054 to rejected_constraints # Constraint # added constraint: constraint((T0492)V15.CB, (T0492)M31.CB) [> 4.030 = 6.717 < 8.732] w=0.054 to rejected_constraints # Constraint # added constraint: constraint((T0492)E38.CB, (T0492)Q52.CB) [> 2.602 = 4.337 < 5.638] w=0.054 to rejected_constraints # Constraint # added constraint: constraint((T0492)Y40.CB, (T0492)I51.CB) [> 4.568 = 7.614 < 9.898] w=0.054 to rejected_constraints # Constraint # added constraint: constraint((T0492)G22.CA, (T0492)A66.CB) [> 4.340 = 7.233 < 9.403] w=0.033 to rejected_constraints # Constraint # added constraint: constraint((T0492)G10.CA, (T0492)N54.CB) [> 4.157 = 6.929 < 9.007] w=0.033 to rejected_constraints # Constraint # added constraint: constraint((T0492)F2.CB, (T0492)I28.CB) [> 4.599 = 7.666 < 9.965] w=0.011 to rejected_constraints # Constraint # added constraint: constraint((T0492)F2.CB, (T0492)M31.CB) [> 3.370 = 5.616 < 7.301] w=0.011 to rejected_constraints # Constraint # added constraint: constraint((T0492)F2.CB, (T0492)I33.CB) [> 4.481 = 7.469 < 9.710] w=0.011 to rejected_constraints # Constraint # added constraint: constraint((T0492)D6.CB, (T0492)R27.CB) [> 3.879 = 6.465 < 8.405] w=0.011 to rejected_constraints # Constraint # added constraint: constraint((T0492)A7.CB, (T0492)L18.CB) [> 3.965 = 6.608 < 8.590] w=0.011 to rejected_constraints # Constraint # added constraint: constraint((T0492)A7.CB, (T0492)H19.CB) [> 3.793 = 6.321 < 8.217] w=0.011 to rejected_constraints # Constraint # added constraint: constraint((T0492)K8.CB, (T0492)L18.CB) [> 4.620 = 7.700 < 10.010] w=0.011 to rejected_constraints # Constraint # added constraint: constraint((T0492)K8.CB, (T0492)H19.CB) [> 3.723 = 6.205 < 8.067] w=0.011 to rejected_constraints # Constraint # added constraint: constraint((T0492)K25.CB, (T0492)R35.CB) [> 4.141 = 6.902 < 8.973] w=0.011 to rejected_constraints # Constraint # added constraint: constraint((T0492)I28.CB, (T0492)I39.CB) [> 4.726 = 7.877 < 10.241] w=0.006 to rejected_constraints # Constraint # added constraint: constraint((T0492)A7.CB, (T0492)L24.CB) [> 4.021 = 6.701 < 8.712] w=0.006 to rejected_constraints # future Constraint commands -> rejected_bonus # future HelixConstraint commands -> rejected_bonus # future StrandConstraint commands -> rejected_bonus # future SheetConstraint commands -> rejected_bonus # future Hbond commands -> rejected_bonus # future SSbond commands -> rejected_bonus Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/T0492rejected_bonus.constraints or /projects/compbio/experiments/protein-predict/casp8/T0492rejected_bonus.constraints.gz for input Trying rejected_bonus.constraints # reading script from file rejected_bonus.constraints # Constraint # added constraint: bonus constraint((T0492)V13.CB, (T0492)E73.CB) [> 4.037 = 6.729 < 8.748] w=0.664 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)K17.CB, (T0492)E71.CB) [> 2.896 = 4.827 < 6.275] w=0.664 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)I51.CB, (T0492)K64.CB) [> 4.116 = 6.860 < 8.918] w=0.608 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)L18.CB, (T0492)E71.CB) [> 3.912 = 6.519 < 8.475] w=0.507 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)L18.CB, (T0492)R35.CB) [> 3.869 = 6.448 < 8.383] w=0.495 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)K17.CB, (T0492)R35.CB) [> 3.848 = 6.413 < 8.338] w=0.495 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)V16.CB, (T0492)G36.CA) [> 3.590 = 5.983 < 7.778] w=0.451 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)L24.CB, (T0492)A66.CB) [> 3.946 = 6.576 < 8.549] w=0.451 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)P50.CB, (T0492)K64.CB) [> 4.062 = 6.771 < 8.802] w=0.439 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)A7.CB, (T0492)I41.CB) [> 3.580 = 5.967 < 7.757] w=0.395 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)H19.CB, (T0492)E71.CB) [> 4.079 = 6.798 < 8.838] w=0.382 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)G10.CA, (T0492)Y40.CB) [> 4.149 = 6.915 < 8.990] w=0.372 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)H19.CB, (T0492)E68.CB) [> 4.064 = 6.774 < 8.806] w=0.282 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)K17.CB, (T0492)M69.CB) [> 4.198 = 6.997 < 9.097] w=0.282 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)I41.CB, (T0492)V72.CB) [> 4.261 = 7.102 < 9.232] w=0.282 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)I41.CB, (T0492)A67.CB) [> 4.626 = 7.710 < 10.024] w=0.269 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)K8.CB, (T0492)I41.CB) [> 3.850 = 6.417 < 8.342] w=0.226 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)A7.CB, (T0492)K43.CB) [> 3.875 = 6.459 < 8.397] w=0.226 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)G10.CA, (T0492)R42.CB) [> 3.764 = 6.274 < 8.156] w=0.203 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)A7.CB, (T0492)A67.CB) [> 4.597 = 7.662 < 9.961] w=0.169 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)C9.CB, (T0492)I51.CB) [> 4.658 = 7.763 < 10.092] w=0.169 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)V15.CB, (T0492)I28.CB) [> 4.676 = 7.794 < 10.132] w=0.169 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)V15.CB, (T0492)I53.CB) [> 4.454 = 7.423 < 9.649] w=0.169 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)G36.CA, (T0492)E73.CB) [> 4.296 = 7.160 < 9.308] w=0.169 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)V44.CB, (T0492)K64.CB) [> 4.408 = 7.347 < 9.551] w=0.169 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)I39.CB, (T0492)I51.CB) [> 4.369 = 7.281 < 9.465] w=0.169 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)I33.CB, (T0492)M69.CB) [> 4.657 = 7.761 < 10.089] w=0.169 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)I28.CB, (T0492)M69.CB) [> 3.432 = 5.720 < 7.436] w=0.169 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)K25.CB, (T0492)M69.CB) [> 4.598 = 7.663 < 9.962] w=0.169 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)C9.CB, (T0492)Y40.CB) [> 3.480 = 5.799 < 7.539] w=0.169 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)G48.CA, (T0492)S65.CB) [> 4.644 = 7.740 < 10.062] w=0.169 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)E68.CB) [> 4.490 = 7.483 < 9.728] w=0.169 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)S3.CB, (T0492)E71.CB) [> 3.444 = 5.740 < 7.462] w=0.169 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)S3.CB, (T0492)E68.CB) [> 3.596 = 5.993 < 7.791] w=0.169 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)S3.CB, (T0492)A67.CB) [> 4.386 = 7.311 < 9.504] w=0.169 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)F2.CB, (T0492)E73.CB) [> 4.395 = 7.326 < 9.524] w=0.169 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)G10.CA, (T0492)K43.CB) [> 3.681 = 6.135 < 7.976] w=0.169 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)R5.CB, (T0492)E68.CB) [> 2.976 = 4.959 < 6.447] w=0.169 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)R5.CB, (T0492)A67.CB) [> 2.810 = 4.684 < 6.089] w=0.169 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)R5.CB, (T0492)K64.CB) [> 3.877 = 6.461 < 8.400] w=0.169 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)R5.CB, (T0492)I51.CB) [> 4.484 = 7.473 < 9.715] w=0.169 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)R5.CB, (T0492)D49.CB) [> 4.040 = 6.734 < 8.754] w=0.169 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)R35.CB, (T0492)E71.CB) [> 4.245 = 7.074 < 9.196] w=0.169 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)M31.CB, (T0492)N54.CB) [> 4.768 = 7.947 < 10.331] w=0.169 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)K14.CB, (T0492)Y40.CB) [> 4.124 = 6.874 < 8.936] w=0.157 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)K17.CB, (T0492)V72.CB) [> 3.980 = 6.633 < 8.623] w=0.157 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)D6.CB, (T0492)V44.CB) [> 4.504 = 7.508 < 9.760] w=0.113 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)D6.CB, (T0492)R42.CB) [> 3.789 = 6.315 < 8.209] w=0.113 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)A7.CB, (T0492)R42.CB) [> 3.405 = 5.676 < 7.378] w=0.113 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)A7.CB, (T0492)N54.CB) [> 4.424 = 7.373 < 9.585] w=0.113 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)K8.CB, (T0492)R42.CB) [> 3.910 = 6.516 < 8.471] w=0.113 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)C9.CB, (T0492)N54.CB) [> 4.063 = 6.772 < 8.804] w=0.113 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)T12.CB, (T0492)C37.CB) [> 3.809 = 6.349 < 8.254] w=0.113 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)L18.CB, (T0492)A66.CB) [> 4.683 = 7.805 < 10.146] w=0.113 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)T21.CB, (T0492)R63.CB) [> 3.669 = 6.114 < 7.949] w=0.113 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)T21.CB, (T0492)S65.CB) [> 3.673 = 6.122 < 7.958] w=0.113 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)M31.CB, (T0492)R56.CB) [> 4.415 = 7.358 < 9.566] w=0.113 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)I53.CB, (T0492)I70.CB) [> 4.762 = 7.936 < 10.317] w=0.113 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)A23.CB, (T0492)R63.CB) [> 4.594 = 7.657 < 9.955] w=0.100 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)A23.CB, (T0492)S65.CB) [> 4.766 = 7.944 < 10.327] w=0.100 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)A23.CB, (T0492)A66.CB) [> 4.430 = 7.383 < 9.598] w=0.100 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)K25.CB, (T0492)A66.CB) [> 2.902 = 4.837 < 6.288] w=0.100 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)R35.CB, (T0492)I70.CB) [> 3.679 = 6.131 < 7.970] w=0.100 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)R35.CB, (T0492)V72.CB) [> 4.245 = 7.075 < 9.197] w=0.100 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)G36.CA, (T0492)I70.CB) [> 4.619 = 7.699 < 10.008] w=0.100 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)G36.CA, (T0492)V72.CB) [> 4.545 = 7.576 < 9.848] w=0.100 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)G10.CA, (T0492)E38.CB) [> 3.657 = 6.095 < 7.924] w=0.056 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)A7.CB, (T0492)Y40.CB) [> 3.033 = 5.056 < 6.572] w=0.056 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)D6.CB, (T0492)N54.CB) [> 2.349 = 3.915 < 5.089] w=0.056 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)D6.CB, (T0492)K43.CB) [> 4.448 = 7.414 < 9.638] w=0.056 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)D6.CB, (T0492)Y40.CB) [> 3.396 = 5.660 < 7.358] w=0.056 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)R5.CB, (T0492)N54.CB) [> 4.479 = 7.465 < 9.704] w=0.056 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)R5.CB, (T0492)R42.CB) [> 2.755 = 4.592 < 5.969] w=0.056 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)N54.CB) [> 2.845 = 4.742 < 6.164] w=0.056 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)R42.CB) [> 3.931 = 6.552 < 8.518] w=0.056 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)Y40.CB) [> 3.802 = 6.337 < 8.239] w=0.056 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)K17.CB, (T0492)E68.CB) [> 3.752 = 6.254 < 8.130] w=0.056 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)V16.CB, (T0492)M69.CB) [> 3.835 = 6.391 < 8.308] w=0.056 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)V16.CB, (T0492)I28.CB) [> 4.349 = 7.249 < 9.424] w=0.056 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)V16.CB, (T0492)K25.CB) [> 3.541 = 5.902 < 7.672] w=0.056 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)K14.CB, (T0492)E71.CB) [> 3.110 = 5.183 < 6.738] w=0.056 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)V13.CB, (T0492)E71.CB) [> 4.341 = 7.235 < 9.405] w=0.056 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)V13.CB, (T0492)G36.CA) [> 3.382 = 5.637 < 7.328] w=0.056 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)V13.CB, (T0492)R35.CB) [> 3.400 = 5.667 < 7.367] w=0.056 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)G10.CA, (T0492)I39.CB) [> 3.770 = 6.284 < 8.169] w=0.056 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)Q11.CB, (T0492)E38.CB) [> 3.957 = 6.594 < 8.573] w=0.056 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)Q11.CB, (T0492)V72.CB) [> 2.733 = 4.555 < 5.922] w=0.056 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)Q11.CB, (T0492)E73.CB) [> 4.119 = 6.865 < 8.924] w=0.056 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)T12.CB, (T0492)G36.CA) [> 3.762 = 6.270 < 8.151] w=0.056 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)T12.CB, (T0492)V72.CB) [> 4.042 = 6.737 < 8.758] w=0.056 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)T12.CB, (T0492)E73.CB) [> 2.964 = 4.940 < 6.422] w=0.056 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)T12.CB, (T0492)R42.CB) [> 2.829 = 4.715 < 6.130] w=0.056 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)T12.CB, (T0492)N54.CB) [> 3.989 = 6.649 < 8.644] w=0.056 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)V13.CB, (T0492)R42.CB) [> 4.157 = 6.929 < 9.008] w=0.056 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)V15.CB, (T0492)Y40.CB) [> 4.462 = 7.437 < 9.669] w=0.056 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)V15.CB, (T0492)I41.CB) [> 3.349 = 5.582 < 7.256] w=0.056 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)V16.CB, (T0492)I39.CB) [> 4.539 = 7.565 < 9.835] w=0.056 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)K17.CB, (T0492)I33.CB) [> 3.187 = 5.311 < 6.905] w=0.056 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)K17.CB, (T0492)G36.CA) [> 3.251 = 5.418 < 7.043] w=0.056 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)K17.CB, (T0492)E38.CB) [> 4.792 = 7.987 < 10.384] w=0.056 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)K17.CB, (T0492)I39.CB) [> 3.615 = 6.026 < 7.833] w=0.056 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)L18.CB, (T0492)V72.CB) [> 3.488 = 5.814 < 7.558] w=0.056 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)L18.CB, (T0492)E73.CB) [> 3.461 = 5.769 < 7.499] w=0.056 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)H19.CB, (T0492)R35.CB) [> 4.641 = 7.735 < 10.056] w=0.056 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)V13.CB, (T0492)M31.CB) [> 4.678 = 7.797 < 10.136] w=0.054 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)K14.CB, (T0492)L24.CB) [> 3.945 = 6.575 < 8.548] w=0.054 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)V15.CB, (T0492)M31.CB) [> 4.030 = 6.717 < 8.732] w=0.054 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)E38.CB, (T0492)Q52.CB) [> 2.602 = 4.337 < 5.638] w=0.054 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)Y40.CB, (T0492)I51.CB) [> 4.568 = 7.614 < 9.898] w=0.054 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)G22.CA, (T0492)A66.CB) [> 4.340 = 7.233 < 9.403] w=0.033 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)G10.CA, (T0492)N54.CB) [> 4.157 = 6.929 < 9.007] w=0.033 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)F2.CB, (T0492)I28.CB) [> 4.599 = 7.666 < 9.965] w=0.011 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)F2.CB, (T0492)M31.CB) [> 3.370 = 5.616 < 7.301] w=0.011 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)F2.CB, (T0492)I33.CB) [> 4.481 = 7.469 < 9.710] w=0.011 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)D6.CB, (T0492)R27.CB) [> 3.879 = 6.465 < 8.405] w=0.011 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)A7.CB, (T0492)L18.CB) [> 3.965 = 6.608 < 8.590] w=0.011 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)A7.CB, (T0492)H19.CB) [> 3.793 = 6.321 < 8.217] w=0.011 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)K8.CB, (T0492)L18.CB) [> 4.620 = 7.700 < 10.010] w=0.011 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)K8.CB, (T0492)H19.CB) [> 3.723 = 6.205 < 8.067] w=0.011 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)K25.CB, (T0492)R35.CB) [> 4.141 = 6.902 < 8.973] w=0.011 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)I28.CB, (T0492)I39.CB) [> 4.726 = 7.877 < 10.241] w=0.006 to rejected_bonus # Constraint # added constraint: bonus constraint((T0492)A7.CB, (T0492)L24.CB) [> 4.021 = 6.701 < 8.712] w=0.006 to rejected_bonus # future Constraint commands -> noncontact # future HelixConstraint commands -> noncontact # future StrandConstraint commands -> noncontact # future SheetConstraint commands -> noncontact # future Hbond commands -> noncontact # future SSbond commands -> noncontact Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/T0492noncontact.constraints or /projects/compbio/experiments/protein-predict/casp8/T0492noncontact.constraints.gz for input Trying noncontact.constraints # reading script from file noncontact.constraints # future Constraint commands -> noncontact_bonus # future HelixConstraint commands -> noncontact_bonus # future StrandConstraint commands -> noncontact_bonus # future SheetConstraint commands -> noncontact_bonus # future Hbond commands -> noncontact_bonus # future SSbond commands -> noncontact_bonus Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/T0492noncontact_bonus.constraints or /projects/compbio/experiments/protein-predict/casp8/T0492noncontact_bonus.constraints.gz for input Trying noncontact_bonus.constraints # reading script from file noncontact_bonus.constraints # future Constraint commands -> ehl2_constraints # future HelixConstraint commands -> ehl2_constraints # future StrandConstraint commands -> ehl2_constraints # future SheetConstraint commands -> ehl2_constraints # future Hbond commands -> ehl2_constraints # future SSbond commands -> ehl2_constraints Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/T0492T0492.dssp-ehl2.constraints or /projects/compbio/experiments/protein-predict/casp8/T0492T0492.dssp-ehl2.constraints.gz for input Trying T0492.dssp-ehl2.constraints # reading script from file T0492.dssp-ehl2.constraints # StrandConstraint # Added 8 Strand constraints for (T0492)T12 through (T0492)L18 to ehl2_constraints # HelixConstraint # Added 9 helix constraints for (T0492)A23 through (T0492)D30 to ehl2_constraints # StrandConstraint # Added 6 Strand constraints for (T0492)E38 through (T0492)K43 to ehl2_constraints # StrandConstraint # Added 2 Strand constraints for (T0492)Q52 through (T0492)V55 to ehl2_constraints # StrandConstraint # Added 2 Strand constraints for (T0492)E59 through (T0492)L62 to ehl2_constraints # StrandConstraint # Added 1 Strand constraints for (T0492)I70 through (T0492)V72 to ehl2_constraints # future Constraint commands -> align_sheets # future HelixConstraint commands -> align_sheets # future StrandConstraint commands -> align_sheets # future SheetConstraint commands -> align_sheets # future Hbond commands -> align_sheets # future SSbond commands -> align_sheets Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/T0492T0492.undertaker-align.sheets or /projects/compbio/experiments/protein-predict/casp8/T0492T0492.undertaker-align.sheets.gz for input Trying T0492.undertaker-align.sheets # reading script from file T0492.undertaker-align.sheets # SheetConstraint # Added 12 sheet constraints for (T0492)K14--(T0492)V16 (T0492)E73--(T0492)E71 with (T0492)K14 of first strand Hbonded to align_sheets # SheetConstraint # Added 6 sheet constraints for (T0492)K17--(T0492)L18 (T0492)E71--(T0492)I70 with (T0492)K17 of first strand Hbonded to align_sheets # SheetConstraint # Added 16 sheet constraints for (T0492)Q52--(T0492)V55 (T0492)S61--(T0492)Y58 with (T0492)I53 of first strand Hbonded to align_sheets # SheetConstraint # Added 12 sheet constraints for (T0492)Y40--(T0492)R42 (T0492)N54--(T0492)Q52 with (T0492)Y40 of first strand Hbonded to align_sheets # SheetConstraint # Added 10 sheet constraints for (T0492)R42--(T0492)V44 (T0492)I53--(T0492)I51 with (T0492)K43 of first strand Hbonded to align_sheets # SheetConstraint # Added 24 sheet constraints for (T0492)Q11--(T0492)V15 (T0492)I41--(T0492)C37 with (T0492)Q11 of first strand Hbonded to align_sheets # SheetConstraint # Added 16 sheet constraints for (T0492)K14--(T0492)K17 (T0492)E73--(T0492)I70 with (T0492)K14 of first strand Hbonded to align_sheets # SheetConstraint # Added 30 sheet constraints for (T0492)P50--(T0492)V55 (T0492)R63--(T0492)Y58 with (T0492)I51 of first strand Hbonded to align_sheets # SheetConstraint # Added 22 sheet constraints for (T0492)I39--(T0492)K43 (T0492)V55--(T0492)I51 with (T0492)Y40 of first strand Hbonded to align_sheets # SheetConstraint # Added 16 sheet constraints for (T0492)T12--(T0492)V15 (T0492)Y40--(T0492)C37 with (T0492)V13 of first strand Hbonded to align_sheets # SheetConstraint # Added 12 sheet constraints for (T0492)K14--(T0492)V16 (T0492)E73--(T0492)E71 with (T0492)K14 of first strand Hbonded to align_sheets # SheetConstraint # Added 16 sheet constraints for (T0492)V16--(T0492)H19 (T0492)V72--(T0492)M69 with (T0492)K17 of first strand Hbonded to align_sheets # SheetConstraint # Added 30 sheet constraints for (T0492)P50--(T0492)V55 (T0492)R63--(T0492)Y58 with (T0492)I51 of first strand Hbonded to align_sheets # SheetConstraint # Added 23 sheet constraints for (T0492)Y40--(T0492)V44 (T0492)N54--(T0492)P50 with (T0492)Y40 of first strand Hbonded to align_sheets # SheetConstraint # Added 16 sheet constraints for (T0492)T12--(T0492)V15 (T0492)Y40--(T0492)C37 with (T0492)V13 of first strand Hbonded to align_sheets # SheetConstraint # Added 29 sheet constraints for (T0492)I39--(T0492)V44 (T0492)V55--(T0492)P50 with (T0492)Y40 of first strand Hbonded to align_sheets # SheetConstraint # Added 12 sheet constraints for (T0492)K14--(T0492)V16 (T0492)E73--(T0492)E71 with (T0492)K14 of first strand Hbonded to align_sheets # SheetConstraint # Added 10 sheet constraints for (T0492)V16--(T0492)L18 (T0492)V72--(T0492)I70 with (T0492)K17 of first strand Hbonded to align_sheets # SheetConstraint # Added 16 sheet constraints for (T0492)Q52--(T0492)V55 (T0492)S61--(T0492)Y58 with (T0492)I53 of first strand Hbonded to align_sheets # SheetConstraint # Added 16 sheet constraints for (T0492)I39--(T0492)R42 (T0492)V55--(T0492)Q52 with (T0492)Y40 of first strand Hbonded to align_sheets # SheetConstraint # Added 16 sheet constraints for (T0492)Q11--(T0492)K14 (T0492)I41--(T0492)E38 with (T0492)Q11 of first strand Hbonded to align_sheets # SheetConstraint # Added 12 sheet constraints for (T0492)K14--(T0492)V16 (T0492)E73--(T0492)E71 with (T0492)K14 of first strand Hbonded to align_sheets # SheetConstraint # Added 10 sheet constraints for (T0492)V16--(T0492)L18 (T0492)V72--(T0492)I70 with (T0492)K17 of first strand Hbonded to align_sheets # SheetConstraint # Added 10 sheet constraints for (T0492)Q52--(T0492)N54 (T0492)S61--(T0492)E59 with (T0492)I53 of first strand Hbonded to align_sheets # SheetConstraint # Added 16 sheet constraints for (T0492)T12--(T0492)V15 (T0492)Y40--(T0492)C37 with (T0492)V13 of first strand Hbonded to align_sheets # SheetConstraint # Added 22 sheet constraints for (T0492)E38--(T0492)R42 (T0492)N54--(T0492)P50 with (T0492)I39 of first strand Hbonded to align_sheets # SheetConstraint # Added 12 sheet constraints for (T0492)K14--(T0492)V16 (T0492)E73--(T0492)E71 with (T0492)K14 of first strand Hbonded to align_sheets # SheetConstraint # Added 10 sheet constraints for (T0492)V16--(T0492)L18 (T0492)V72--(T0492)I70 with (T0492)K17 of first strand Hbonded to align_sheets # SheetConstraint # Added 24 sheet constraints for (T0492)I51--(T0492)V55 (T0492)L62--(T0492)Y58 with (T0492)I51 of first strand Hbonded to align_sheets # SheetConstraint # Added 22 sheet constraints for (T0492)I39--(T0492)K43 (T0492)V55--(T0492)I51 with (T0492)Y40 of first strand Hbonded to align_sheets # SheetConstraint # Added 16 sheet constraints for (T0492)T12--(T0492)V15 (T0492)Y40--(T0492)C37 with (T0492)V13 of first strand Hbonded to align_sheets # SheetConstraint # Added 16 sheet constraints for (T0492)Q52--(T0492)V55 (T0492)S61--(T0492)Y58 with (T0492)I53 of first strand Hbonded to align_sheets # SheetConstraint # Added 15 sheet constraints for (T0492)V44--(T0492)L47 (T0492)I53--(T0492)P50 with (T0492)A45 of first strand Hbonded to align_sheets # SheetConstraint # Added 22 sheet constraints for (T0492)Y40--(T0492)V44 (T0492)N54--(T0492)P50 with (T0492)I41 of first strand Hbonded to align_sheets # SheetConstraint # Added 16 sheet constraints for (T0492)I41--(T0492)V44 (T0492)I53--(T0492)P50 with (T0492)I41 of first strand Hbonded to align_sheets # future Constraint commands -> two_stage # future HelixConstraint commands -> two_stage # future StrandConstraint commands -> two_stage # future SheetConstraint commands -> two_stage # future Hbond commands -> two_stage # future SSbond commands -> two_stage Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/T0492T0492.648_17.730_47.rr.nn1000.constraints or /projects/compbio/experiments/protein-predict/casp8/T0492T0492.648_17.730_47.rr.nn1000.constraints.gz for input Trying T0492.648_17.730_47.rr.nn1000.constraints # reading script from file T0492.648_17.730_47.rr.nn1000.constraints # Constraint # added constraint: bonus constraint((T0492)Q52.CB, (T0492)S61.CB) [> -999.000 = 6.500 < 8.500] w=0.727 to two_stage # Constraint # added constraint: bonus constraint((T0492)I41.CB, (T0492)I53.CB) [> -999.000 = 6.500 < 8.500] w=0.663 to two_stage # Constraint # added constraint: bonus constraint((T0492)Q52.CB, (T0492)L62.CB) [> -999.000 = 6.500 < 8.500] w=0.649 to two_stage # Constraint # added constraint: bonus constraint((T0492)R42.CB, (T0492)Q52.CB) [> -999.000 = 6.500 < 8.500] w=0.586 to two_stage # Constraint # added constraint: bonus constraint((T0492)R42.CB, (T0492)I53.CB) [> -999.000 = 6.500 < 8.500] w=0.576 to two_stage # Constraint # added constraint: bonus constraint((T0492)I39.CB, (T0492)I53.CB) [> -999.000 = 6.500 < 8.500] w=0.532 to two_stage # Constraint # added constraint: bonus constraint((T0492)I53.CB, (T0492)L62.CB) [> -999.000 = 6.500 < 8.500] w=0.526 to two_stage # Constraint # added constraint: bonus constraint((T0492)I39.CB, (T0492)V55.CB) [> -999.000 = 6.500 < 8.500] w=0.505 to two_stage # Constraint # added constraint: bonus constraint((T0492)K43.CB, (T0492)Q52.CB) [> -999.000 = 6.500 < 8.500] w=0.497 to two_stage # Constraint # added constraint: bonus constraint((T0492)Y40.CB, (T0492)I53.CB) [> -999.000 = 6.500 < 8.500] w=0.485 to two_stage # Constraint # added constraint: bonus constraint((T0492)V15.CB, (T0492)I39.CB) [> -999.000 = 6.500 < 8.500] w=0.482 to two_stage # Constraint # added constraint: bonus constraint((T0492)I51.CB, (T0492)L62.CB) [> -999.000 = 6.500 < 8.500] w=0.479 to two_stage # Constraint # added constraint: bonus constraint((T0492)I39.CB, (T0492)I70.CB) [> -999.000 = 6.500 < 8.500] w=0.452 to two_stage # Constraint # added constraint: bonus constraint((T0492)V15.CB, (T0492)I70.CB) [> -999.000 = 6.500 < 8.500] w=0.447 to two_stage # Constraint # added constraint: bonus constraint((T0492)I53.CB, (T0492)I70.CB) [> -999.000 = 6.500 < 8.500] w=0.438 to two_stage # Constraint # added constraint: bonus constraint((T0492)V13.CB, (T0492)I41.CB) [> -999.000 = 6.500 < 8.500] w=0.419 to two_stage # Constraint # added constraint: bonus constraint((T0492)I51.CB, (T0492)S61.CB) [> -999.000 = 6.500 < 8.500] w=0.419 to two_stage # Constraint # added constraint: bonus constraint((T0492)Y40.CB, (T0492)N54.CB) [> -999.000 = 6.500 < 8.500] w=0.411 to two_stage # Constraint # added constraint: bonus constraint((T0492)L60.CB, (T0492)I70.CB) [> -999.000 = 6.500 < 8.500] w=0.403 to two_stage # Constraint # added constraint: bonus constraint((T0492)K43.CB, (T0492)I53.CB) [> -999.000 = 6.500 < 8.500] w=0.394 to two_stage # Constraint # added constraint: bonus constraint((T0492)Q52.CB, (T0492)R63.CB) [> -999.000 = 6.500 < 8.500] w=0.392 to two_stage # Constraint # added constraint: bonus constraint((T0492)R42.CB, (T0492)N54.CB) [> -999.000 = 6.500 < 8.500] w=0.379 to two_stage # Constraint # added constraint: bonus constraint((T0492)V15.CB, (T0492)I41.CB) [> -999.000 = 6.500 < 8.500] w=0.370 to two_stage # Constraint # added constraint: bonus constraint((T0492)V15.CB, (T0492)I28.CB) [> -999.000 = 6.500 < 8.500] w=0.361 to two_stage # Constraint # added constraint: bonus constraint((T0492)V15.CB, (T0492)I53.CB) [> -999.000 = 6.500 < 8.500] w=0.357 to two_stage # Constraint # added constraint: bonus constraint((T0492)V16.CB, (T0492)Y40.CB) [> -999.000 = 6.500 < 8.500] w=0.343 to two_stage # Constraint # added constraint: bonus constraint((T0492)R42.CB, (T0492)I51.CB) [> -999.000 = 6.500 < 8.500] w=0.342 to two_stage # Constraint # added constraint: bonus constraint((T0492)I41.CB, (T0492)Q52.CB) [> -999.000 = 6.500 < 8.500] w=0.335 to two_stage # Constraint # added constraint: bonus constraint((T0492)P50.CB, (T0492)R63.CB) [> -999.000 = 6.500 < 8.500] w=0.328 to two_stage # Constraint # added constraint: bonus constraint((T0492)P50.CB, (T0492)S61.CB) [> -999.000 = 6.500 < 8.500] w=0.325 to two_stage # Constraint # added constraint: bonus constraint((T0492)P50.CB, (T0492)L62.CB) [> -999.000 = 6.500 < 8.500] w=0.326 to two_stage # Constraint # added constraint: bonus constraint((T0492)I51.CB, (T0492)R63.CB) [> -999.000 = 6.500 < 8.500] w=0.320 to two_stage # Constraint # added constraint: bonus constraint((T0492)I41.CB, (T0492)I51.CB) [> -999.000 = 6.500 < 8.500] w=0.317 to two_stage # Constraint # added constraint: bonus constraint((T0492)I41.CB, (T0492)V55.CB) [> -999.000 = 6.500 < 8.500] w=0.308 to two_stage # Constraint # added constraint: bonus constraint((T0492)R42.CB, (T0492)S61.CB) [> -999.000 = 6.500 < 8.500] w=0.307 to two_stage # Constraint # added constraint: bonus constraint((T0492)I41.CB, (T0492)I70.CB) [> -999.000 = 6.500 < 8.500] w=0.297 to two_stage # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)V15.CB) [> -999.000 = 6.500 < 8.500] w=0.295 to two_stage # Constraint # added constraint: bonus constraint((T0492)Y40.CB, (T0492)Q52.CB) [> -999.000 = 6.500 < 8.500] w=0.293 to two_stage # Constraint # added constraint: bonus constraint((T0492)A45.CB, (T0492)L60.CB) [> -999.000 = 6.500 < 8.500] w=0.289 to two_stage # Constraint # added constraint: bonus constraint((T0492)I41.CB, (T0492)L62.CB) [> -999.000 = 6.500 < 8.500] w=0.288 to two_stage # Constraint # added constraint: bonus constraint((T0492)I28.CB, (T0492)I39.CB) [> -999.000 = 6.500 < 8.500] w=0.282 to two_stage # Constraint # added constraint: bonus constraint((T0492)Y40.CB, (T0492)V55.CB) [> -999.000 = 6.500 < 8.500] w=0.280 to two_stage # Constraint # added constraint: bonus constraint((T0492)A45.CB, (T0492)S61.CB) [> -999.000 = 6.500 < 8.500] w=0.280 to two_stage # Constraint # added constraint: bonus constraint((T0492)I39.CB, (T0492)L62.CB) [> -999.000 = 6.500 < 8.500] w=0.279 to two_stage # Constraint # added constraint: bonus constraint((T0492)I41.CB, (T0492)N54.CB) [> -999.000 = 6.500 < 8.500] w=0.279 to two_stage # Constraint # added constraint: bonus constraint((T0492)V55.CB, (T0492)I70.CB) [> -999.000 = 6.500 < 8.500] w=0.279 to two_stage # Constraint # added constraint: bonus constraint((T0492)K14.CB, (T0492)I41.CB) [> -999.000 = 6.500 < 8.500] w=0.273 to two_stage # Constraint # added constraint: bonus constraint((T0492)V16.CB, (T0492)I41.CB) [> -999.000 = 6.500 < 8.500] w=0.274 to two_stage # Constraint # added constraint: bonus constraint((T0492)R42.CB, (T0492)L62.CB) [> -999.000 = 6.500 < 8.500] w=0.271 to two_stage # Constraint # added constraint: bonus constraint((T0492)R42.CB, (T0492)I70.CB) [> -999.000 = 6.500 < 8.500] w=0.268 to two_stage # Constraint # added constraint: bonus constraint((T0492)I51.CB, (T0492)L60.CB) [> -999.000 = 6.500 < 8.500] w=0.265 to two_stage # Constraint # added constraint: bonus constraint((T0492)S61.CB, (T0492)I70.CB) [> -999.000 = 6.500 < 8.500] w=0.261 to two_stage # Constraint # added constraint: bonus constraint((T0492)V16.CB, (T0492)Q52.CB) [> -999.000 = 6.500 < 8.500] w=0.258 to two_stage # Constraint # added constraint: bonus constraint((T0492)V44.CB, (T0492)I53.CB) [> -999.000 = 6.500 < 8.500] w=0.257 to two_stage # Constraint # added constraint: bonus constraint((T0492)V13.CB, (T0492)R42.CB) [> -999.000 = 6.500 < 8.500] w=0.255 to two_stage # Constraint # added constraint: bonus constraint((T0492)I39.CB, (T0492)N54.CB) [> -999.000 = 6.500 < 8.500] w=0.255 to two_stage # Constraint # added constraint: bonus constraint((T0492)V15.CB, (T0492)V55.CB) [> -999.000 = 6.500 < 8.500] w=0.254 to two_stage # Constraint # added constraint: bonus constraint((T0492)K43.CB, (T0492)S61.CB) [> -999.000 = 6.500 < 8.500] w=0.254 to two_stage # Constraint # added constraint: bonus constraint((T0492)E38.CB, (T0492)N54.CB) [> -999.000 = 6.500 < 8.500] w=0.253 to two_stage # Constraint # added constraint: bonus constraint((T0492)V16.CB, (T0492)I53.CB) [> -999.000 = 6.500 < 8.500] w=0.251 to two_stage # Constraint # added constraint: bonus constraint((T0492)V15.CB, (T0492)Y40.CB) [> -999.000 = 6.500 < 8.500] w=0.250 to two_stage # Constraint # added constraint: bonus constraint((T0492)T12.CB, (T0492)V44.CB) [> -999.000 = 6.500 < 8.500] w=0.248 to two_stage # Constraint # added constraint: bonus constraint((T0492)D49.CB, (T0492)R63.CB) [> -999.000 = 6.500 < 8.500] w=0.247 to two_stage # Constraint # added constraint: bonus constraint((T0492)I33.CB, (T0492)L60.CB) [> -999.000 = 6.500 < 8.500] w=0.238 to two_stage # Constraint # added constraint: bonus constraint((T0492)I51.CB, (T0492)I70.CB) [> -999.000 = 6.500 < 8.500] w=0.239 to two_stage # Constraint # added constraint: bonus constraint((T0492)E38.CB, (T0492)V55.CB) [> -999.000 = 6.500 < 8.500] w=0.237 to two_stage # Constraint # added constraint: bonus constraint((T0492)K43.CB, (T0492)L60.CB) [> -999.000 = 6.500 < 8.500] w=0.235 to two_stage # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)V13.CB) [> -999.000 = 6.500 < 8.500] w=0.232 to two_stage # Constraint # added constraint: bonus constraint((T0492)T12.CB, (T0492)K43.CB) [> -999.000 = 6.500 < 8.500] w=0.226 to two_stage # Constraint # added constraint: bonus constraint((T0492)V15.CB, (T0492)I33.CB) [> -999.000 = 6.500 < 8.500] w=0.225 to two_stage # Constraint # added constraint: bonus constraint((T0492)V16.CB, (T0492)I39.CB) [> -999.000 = 6.500 < 8.500] w=0.226 to two_stage # Constraint # added constraint: bonus constraint((T0492)K17.CB, (T0492)Q52.CB) [> -999.000 = 6.500 < 8.500] w=0.225 to two_stage # Constraint # added constraint: bonus constraint((T0492)R42.CB, (T0492)L60.CB) [> -999.000 = 6.500 < 8.500] w=0.225 to two_stage # Constraint # added constraint: bonus constraint((T0492)V13.CB, (T0492)V44.CB) [> -999.000 = 6.500 < 8.500] w=0.224 to two_stage # Constraint # added constraint: bonus constraint((T0492)I53.CB, (T0492)R63.CB) [> -999.000 = 6.500 < 8.500] w=0.224 to two_stage # Constraint # added constraint: bonus constraint((T0492)Q52.CB, (T0492)A66.CB) [> -999.000 = 6.500 < 8.500] w=0.215 to two_stage # Constraint # added constraint: bonus constraint((T0492)K43.CB, (T0492)N54.CB) [> -999.000 = 6.500 < 8.500] w=0.212 to two_stage # Constraint # added constraint: bonus constraint((T0492)E38.CB, (T0492)I53.CB) [> -999.000 = 6.500 < 8.500] w=0.210 to two_stage # Constraint # added constraint: bonus constraint((T0492)V13.CB, (T0492)K43.CB) [> -999.000 = 6.500 < 8.500] w=0.208 to two_stage # Constraint # added constraint: bonus constraint((T0492)I28.CB, (T0492)I53.CB) [> -999.000 = 6.500 < 8.500] w=0.204 to two_stage # Constraint # added constraint: bonus constraint((T0492)K43.CB, (T0492)E59.CB) [> -999.000 = 6.500 < 8.500] w=0.204 to two_stage # Constraint # added constraint: bonus constraint((T0492)G36.CA, (T0492)S61.CB) [> -999.000 = 6.500 < 8.500] w=0.203 to two_stage # Constraint # added constraint: bonus constraint((T0492)G36.CA, (T0492)L62.CB) [> -999.000 = 6.500 < 8.500] w=0.202 to two_stage # Constraint # added constraint: bonus constraint((T0492)D49.CB, (T0492)L62.CB) [> -999.000 = 6.500 < 8.500] w=0.202 to two_stage # Constraint # added constraint: bonus constraint((T0492)K17.CB, (T0492)Y40.CB) [> -999.000 = 6.500 < 8.500] w=0.201 to two_stage # Constraint # added constraint: bonus constraint((T0492)T12.CB, (T0492)I41.CB) [> -999.000 = 6.500 < 8.500] w=0.198 to two_stage # Constraint # added constraint: bonus constraint((T0492)V15.CB, (T0492)L62.CB) [> -999.000 = 6.500 < 8.500] w=0.199 to two_stage # Constraint # added constraint: bonus constraint((T0492)C37.CB, (T0492)R56.CB) [> -999.000 = 6.500 < 8.500] w=0.198 to two_stage # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)G32.CA) [> -999.000 = 6.500 < 8.500] w=0.197 to two_stage # Constraint # added constraint: bonus constraint((T0492)A45.CB, (T0492)E59.CB) [> -999.000 = 6.500 < 8.500] w=0.196 to two_stage # Constraint # added constraint: bonus constraint((T0492)D49.CB, (T0492)S61.CB) [> -999.000 = 6.500 < 8.500] w=0.195 to two_stage # Constraint # added constraint: bonus constraint((T0492)L18.CB, (T0492)I39.CB) [> -999.000 = 6.500 < 8.500] w=0.193 to two_stage # Constraint # added constraint: bonus constraint((T0492)K14.CB, (T0492)Y40.CB) [> -999.000 = 6.500 < 8.500] w=0.190 to two_stage # Constraint # added constraint: bonus constraint((T0492)K14.CB, (T0492)R42.CB) [> -999.000 = 6.500 < 8.500] w=0.191 to two_stage # Constraint # added constraint: bonus constraint((T0492)I33.CB, (T0492)I53.CB) [> -999.000 = 6.500 < 8.500] w=0.190 to two_stage # Constraint # added constraint: bonus constraint((T0492)T12.CB, (T0492)R42.CB) [> -999.000 = 6.500 < 8.500] w=0.186 to two_stage # Constraint # added constraint: bonus constraint((T0492)I28.CB, (T0492)I70.CB) [> -999.000 = 6.500 < 8.500] w=0.185 to two_stage # Constraint # added constraint: bonus constraint((T0492)I39.CB, (T0492)S61.CB) [> -999.000 = 6.500 < 8.500] w=0.186 to two_stage # Constraint # added constraint: bonus constraint((T0492)R42.CB, (T0492)M69.CB) [> -999.000 = 6.500 < 8.500] w=0.185 to two_stage # Constraint # added constraint: bonus constraint((T0492)L47.CB, (T0492)L60.CB) [> -999.000 = 6.500 < 8.500] w=0.185 to two_stage # Constraint # added constraint: bonus constraint((T0492)Y40.CB, (T0492)R56.CB) [> -999.000 = 6.500 < 8.500] w=0.183 to two_stage # Constraint # added constraint: bonus constraint((T0492)R42.CB, (T0492)V55.CB) [> -999.000 = 6.500 < 8.500] w=0.183 to two_stage # Constraint # added constraint: bonus constraint((T0492)E38.CB, (T0492)R56.CB) [> -999.000 = 6.500 < 8.500] w=0.180 to two_stage # Constraint # added constraint: bonus constraint((T0492)L18.CB, (T0492)Q52.CB) [> -999.000 = 6.500 < 8.500] w=0.179 to two_stage # Constraint # added constraint: bonus constraint((T0492)G36.CA, (T0492)R63.CB) [> -999.000 = 6.500 < 8.500] w=0.178 to two_stage # Constraint # added constraint: bonus constraint((T0492)T12.CB, (T0492)A45.CB) [> -999.000 = 6.500 < 8.500] w=0.176 to two_stage # Constraint # added constraint: bonus constraint((T0492)T12.CB, (T0492)N54.CB) [> -999.000 = 6.500 < 8.500] w=0.176 to two_stage # Constraint # added constraint: bonus constraint((T0492)K14.CB, (T0492)I53.CB) [> -999.000 = 6.500 < 8.500] w=0.177 to two_stage # Constraint # added constraint: bonus constraint((T0492)E38.CB, (T0492)S61.CB) [> -999.000 = 6.500 < 8.500] w=0.177 to two_stage # Constraint # added constraint: bonus constraint((T0492)I28.CB, (T0492)I41.CB) [> -999.000 = 6.500 < 8.500] w=0.175 to two_stage # Constraint # added constraint: bonus constraint((T0492)E38.CB, (T0492)L62.CB) [> -999.000 = 6.500 < 8.500] w=0.176 to two_stage # Constraint # added constraint: bonus constraint((T0492)I41.CB, (T0492)P50.CB) [> -999.000 = 6.500 < 8.500] w=0.176 to two_stage # Constraint # added constraint: bonus constraint((T0492)V15.CB, (T0492)R42.CB) [> -999.000 = 6.500 < 8.500] w=0.175 to two_stage # Constraint # added constraint: bonus constraint((T0492)Q52.CB, (T0492)I70.CB) [> -999.000 = 6.500 < 8.500] w=0.174 to two_stage # Constraint # added constraint: bonus constraint((T0492)K14.CB, (T0492)N54.CB) [> -999.000 = 6.500 < 8.500] w=0.172 to two_stage # Constraint # added constraint: bonus constraint((T0492)V16.CB, (T0492)I51.CB) [> -999.000 = 6.500 < 8.500] w=0.173 to two_stage # Constraint # added constraint: bonus constraint((T0492)I39.CB, (T0492)Q52.CB) [> -999.000 = 6.500 < 8.500] w=0.173 to two_stage # Constraint # added constraint: bonus constraint((T0492)V15.CB, (T0492)Q52.CB) [> -999.000 = 6.500 < 8.500] w=0.171 to two_stage # Constraint # added constraint: bonus constraint((T0492)I33.CB, (T0492)L62.CB) [> -999.000 = 6.500 < 8.500] w=0.170 to two_stage # Constraint # added constraint: bonus constraint((T0492)I39.CB, (T0492)L60.CB) [> -999.000 = 6.500 < 8.500] w=0.171 to two_stage # Constraint # added constraint: bonus constraint((T0492)I41.CB, (T0492)L60.CB) [> -999.000 = 6.500 < 8.500] w=0.170 to two_stage # Constraint # added constraint: bonus constraint((T0492)I51.CB, (T0492)K64.CB) [> -999.000 = 6.500 < 8.500] w=0.171 to two_stage # Constraint # added constraint: bonus constraint((T0492)V16.CB, (T0492)E38.CB) [> -999.000 = 6.500 < 8.500] w=0.169 to two_stage # Constraint # added constraint: bonus constraint((T0492)C37.CB, (T0492)G57.CA) [> -999.000 = 6.500 < 8.500] w=0.169 to two_stage # Constraint # added constraint: bonus constraint((T0492)V16.CB, (T0492)N54.CB) [> -999.000 = 6.500 < 8.500] w=0.168 to two_stage # Constraint # added constraint: bonus constraint((T0492)I41.CB, (T0492)S61.CB) [> -999.000 = 6.500 < 8.500] w=0.169 to two_stage # Constraint # added constraint: bonus constraint((T0492)V15.CB, (T0492)C37.CB) [> -999.000 = 6.500 < 8.500] w=0.167 to two_stage # Constraint # added constraint: bonus constraint((T0492)A45.CB, (T0492)Y58.CB) [> -999.000 = 6.500 < 8.500] w=0.168 to two_stage # Constraint # added constraint: bonus constraint((T0492)V15.CB, (T0492)R27.CB) [> -999.000 = 6.500 < 8.500] w=0.165 to two_stage # Constraint # added constraint: bonus constraint((T0492)V16.CB, (T0492)I70.CB) [> -999.000 = 6.500 < 8.500] w=0.165 to two_stage # Constraint # added constraint: bonus constraint((T0492)L18.CB, (T0492)I53.CB) [> -999.000 = 6.500 < 8.500] w=0.166 to two_stage # Constraint # added constraint: bonus constraint((T0492)I53.CB, (T0492)A67.CB) [> -999.000 = 6.500 < 8.500] w=0.166 to two_stage # Constraint # added constraint: bonus constraint((T0492)M29.CB, (T0492)L60.CB) [> -999.000 = 6.500 < 8.500] w=0.165 to two_stage # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)I70.CB) [> -999.000 = 6.500 < 8.500] w=0.163 to two_stage # Constraint # added constraint: bonus constraint((T0492)Q11.CB, (T0492)V44.CB) [> -999.000 = 6.500 < 8.500] w=0.164 to two_stage # Constraint # added constraint: bonus constraint((T0492)C37.CB, (T0492)I53.CB) [> -999.000 = 6.500 < 8.500] w=0.164 to two_stage # Constraint # added constraint: bonus constraint((T0492)V13.CB, (T0492)I53.CB) [> -999.000 = 6.500 < 8.500] w=0.163 to two_stage # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)K14.CB) [> -999.000 = 6.500 < 8.500] w=0.161 to two_stage # Constraint # added constraint: bonus constraint((T0492)V15.CB, (T0492)L60.CB) [> -999.000 = 6.500 < 8.500] w=0.162 to two_stage # Constraint # added constraint: bonus constraint((T0492)M29.CB, (T0492)I53.CB) [> -999.000 = 6.500 < 8.500] w=0.162 to two_stage # Constraint # added constraint: bonus constraint((T0492)Y40.CB, (T0492)I51.CB) [> -999.000 = 6.500 < 8.500] w=0.163 to two_stage # Constraint # added constraint: bonus constraint((T0492)Y40.CB, (T0492)L62.CB) [> -999.000 = 6.500 < 8.500] w=0.162 to two_stage # Constraint # added constraint: bonus constraint((T0492)R42.CB, (T0492)E59.CB) [> -999.000 = 6.500 < 8.500] w=0.163 to two_stage # Constraint # added constraint: bonus constraint((T0492)L47.CB, (T0492)S61.CB) [> -999.000 = 6.500 < 8.500] w=0.162 to two_stage # Constraint # added constraint: bonus constraint((T0492)I51.CB, (T0492)A66.CB) [> -999.000 = 6.500 < 8.500] w=0.162 to two_stage # Constraint # added constraint: bonus constraint((T0492)E59.CB, (T0492)I70.CB) [> -999.000 = 6.500 < 8.500] w=0.162 to two_stage # Constraint # added constraint: bonus constraint((T0492)T12.CB, (T0492)Y40.CB) [> -999.000 = 6.500 < 8.500] w=0.160 to two_stage # Constraint # added constraint: bonus constraint((T0492)E38.CB, (T0492)R63.CB) [> -999.000 = 6.500 < 8.500] w=0.160 to two_stage # Constraint # added constraint: bonus constraint((T0492)C37.CB, (T0492)N54.CB) [> -999.000 = 6.500 < 8.500] w=0.159 to two_stage # Constraint # added constraint: bonus constraint((T0492)G10.CA, (T0492)V55.CB) [> -999.000 = 6.500 < 8.500] w=0.156 to two_stage # Constraint # added constraint: bonus constraint((T0492)V13.CB, (T0492)I28.CB) [> -999.000 = 6.500 < 8.500] w=0.156 to two_stage # Constraint # added constraint: bonus constraint((T0492)V15.CB, (T0492)E38.CB) [> -999.000 = 6.500 < 8.500] w=0.157 to two_stage # Constraint # added constraint: bonus constraint((T0492)P50.CB, (T0492)K64.CB) [> -999.000 = 6.500 < 8.500] w=0.156 to two_stage # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)I28.CB) [> -999.000 = 6.500 < 8.500] w=0.155 to two_stage # Constraint # added constraint: bonus constraint((T0492)Q11.CB, (T0492)K43.CB) [> -999.000 = 6.500 < 8.500] w=0.155 to two_stage # Constraint # added constraint: bonus constraint((T0492)T12.CB, (T0492)R56.CB) [> -999.000 = 6.500 < 8.500] w=0.155 to two_stage # Constraint # added constraint: bonus constraint((T0492)G36.CA, (T0492)V55.CB) [> -999.000 = 6.500 < 8.500] w=0.155 to two_stage # Constraint # added constraint: bonus constraint((T0492)C37.CB, (T0492)P46.CB) [> -999.000 = 6.500 < 8.500] w=0.154 to two_stage # Constraint # added constraint: bonus constraint((T0492)C37.CB, (T0492)V55.CB) [> -999.000 = 6.500 < 8.500] w=0.152 to two_stage # Constraint # added constraint: bonus constraint((T0492)A45.CB, (T0492)M69.CB) [> -999.000 = 6.500 < 8.500] w=0.152 to two_stage # Constraint # added constraint: bonus constraint((T0492)L60.CB, (T0492)M69.CB) [> -999.000 = 6.500 < 8.500] w=0.153 to two_stage # Constraint # added constraint: bonus constraint((T0492)V44.CB, (T0492)S61.CB) [> -999.000 = 6.500 < 8.500] w=0.152 to two_stage # Constraint # added constraint: bonus constraint((T0492)C37.CB, (T0492)R63.CB) [> -999.000 = 6.500 < 8.500] w=0.150 to two_stage # Constraint # added constraint: bonus constraint((T0492)K43.CB, (T0492)M69.CB) [> -999.000 = 6.500 < 8.500] w=0.151 to two_stage # Constraint # added constraint: bonus constraint((T0492)Q52.CB, (T0492)K64.CB) [> -999.000 = 6.500 < 8.500] w=0.150 to two_stage # Constraint # added constraint: bonus constraint((T0492)K43.CB, (T0492)I70.CB) [> -999.000 = 6.500 < 8.500] w=0.149 to two_stage # Constraint # added constraint: bonus constraint((T0492)L18.CB, (T0492)I70.CB) [> -999.000 = 6.500 < 8.500] w=0.148 to two_stage # Constraint # added constraint: bonus constraint((T0492)V44.CB, (T0492)E59.CB) [> -999.000 = 6.500 < 8.500] w=0.148 to two_stage # Constraint # added constraint: bonus constraint((T0492)I51.CB, (T0492)A67.CB) [> -999.000 = 6.500 < 8.500] w=0.149 to two_stage # Constraint # added constraint: bonus constraint((T0492)V15.CB, (T0492)N54.CB) [> -999.000 = 6.500 < 8.500] w=0.147 to two_stage # Constraint # added constraint: bonus constraint((T0492)C37.CB, (T0492)L62.CB) [> -999.000 = 6.500 < 8.500] w=0.147 to two_stage # Constraint # added constraint: bonus constraint((T0492)I39.CB, (T0492)R56.CB) [> -999.000 = 6.500 < 8.500] w=0.147 to two_stage # Constraint # added constraint: bonus constraint((T0492)K43.CB, (T0492)L62.CB) [> -999.000 = 6.500 < 8.500] w=0.146 to two_stage # Constraint # added constraint: bonus constraint((T0492)P50.CB, (T0492)I70.CB) [> -999.000 = 6.500 < 8.500] w=0.146 to two_stage # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)I41.CB) [> -999.000 = 6.500 < 8.500] w=0.145 to two_stage # Constraint # added constraint: bonus constraint((T0492)K14.CB, (T0492)V44.CB) [> -999.000 = 6.500 < 8.500] w=0.145 to two_stage # Constraint # added constraint: bonus constraint((T0492)V13.CB, (T0492)A45.CB) [> -999.000 = 6.500 < 8.500] w=0.143 to two_stage # Constraint # added constraint: bonus constraint((T0492)V15.CB, (T0492)P50.CB) [> -999.000 = 6.500 < 8.500] w=0.144 to two_stage # Constraint # added constraint: bonus constraint((T0492)I28.CB, (T0492)L62.CB) [> -999.000 = 6.500 < 8.500] w=0.145 to two_stage # Constraint # added constraint: bonus constraint((T0492)I28.CB, (T0492)V55.CB) [> -999.000 = 6.500 < 8.500] w=0.143 to two_stage # Constraint # added constraint: bonus constraint((T0492)Y58.CB, (T0492)I70.CB) [> -999.000 = 6.500 < 8.500] w=0.144 to two_stage # Constraint # added constraint: bonus constraint((T0492)T12.CB, (T0492)V55.CB) [> -999.000 = 6.500 < 8.500] w=0.142 to two_stage # Constraint # added constraint: bonus constraint((T0492)Y40.CB, (T0492)I70.CB) [> -999.000 = 6.500 < 8.500] w=0.143 to two_stage # Constraint # added constraint: bonus constraint((T0492)V44.CB, (T0492)L60.CB) [> -999.000 = 6.500 < 8.500] w=0.142 to two_stage # Constraint # added constraint: bonus constraint((T0492)R56.CB, (T0492)I70.CB) [> -999.000 = 6.500 < 8.500] w=0.142 to two_stage # Constraint # added constraint: bonus constraint((T0492)D49.CB, (T0492)K64.CB) [> -999.000 = 6.500 < 8.500] w=0.141 to two_stage # Constraint # added constraint: bonus constraint((T0492)V13.CB, (T0492)Y40.CB) [> -999.000 = 6.500 < 8.500] w=0.138 to two_stage # Constraint # added constraint: bonus constraint((T0492)V13.CB, (T0492)N54.CB) [> -999.000 = 6.500 < 8.500] w=0.139 to two_stage # Constraint # added constraint: bonus constraint((T0492)E38.CB, (T0492)Q52.CB) [> -999.000 = 6.500 < 8.500] w=0.140 to two_stage # Constraint # added constraint: bonus constraint((T0492)I33.CB, (T0492)I70.CB) [> -999.000 = 6.500 < 8.500] w=0.138 to two_stage # Constraint # added constraint: bonus constraint((T0492)G36.CA, (T0492)G57.CA) [> -999.000 = 6.500 < 8.500] w=0.138 to two_stage # Constraint # added constraint: bonus constraint((T0492)E59.CB, (T0492)M69.CB) [> -999.000 = 6.500 < 8.500] w=0.138 to two_stage # Constraint # added constraint: bonus constraint((T0492)L18.CB, (T0492)R27.CB) [> -999.000 = 6.500 < 8.500] w=0.136 to two_stage # Constraint # added constraint: bonus constraint((T0492)G10.CA, (T0492)R63.CB) [> -999.000 = 6.500 < 8.500] w=0.135 to two_stage # Constraint # added constraint: bonus constraint((T0492)M29.CB, (T0492)I41.CB) [> -999.000 = 6.500 < 8.500] w=0.136 to two_stage # Constraint # added constraint: bonus constraint((T0492)M29.CB, (T0492)S61.CB) [> -999.000 = 6.500 < 8.500] w=0.132 to two_stage # Constraint # added constraint: bonus constraint((T0492)I33.CB, (T0492)V55.CB) [> -999.000 = 6.500 < 8.500] w=0.133 to two_stage # Constraint # added constraint: bonus constraint((T0492)N54.CB, (T0492)I70.CB) [> -999.000 = 6.500 < 8.500] w=0.134 to two_stage # Constraint # added constraint: bonus constraint((T0492)V16.CB, (T0492)R42.CB) [> -999.000 = 6.500 < 8.500] w=0.131 to two_stage # Constraint # added constraint: bonus constraint((T0492)L18.CB, (T0492)E38.CB) [> -999.000 = 6.500 < 8.500] w=0.132 to two_stage # Constraint # added constraint: bonus constraint((T0492)Y40.CB, (T0492)S61.CB) [> -999.000 = 6.500 < 8.500] w=0.132 to two_stage # Constraint # added constraint: bonus constraint((T0492)E38.CB, (T0492)G57.CA) [> -999.000 = 6.500 < 8.500] w=0.131 to two_stage # Constraint # added constraint: bonus constraint((T0492)Y40.CB, (T0492)R63.CB) [> -999.000 = 6.500 < 8.500] w=0.131 to two_stage # Constraint # added constraint: bonus constraint((T0492)I41.CB, (T0492)E59.CB) [> -999.000 = 6.500 < 8.500] w=0.131 to two_stage # Constraint # added constraint: bonus constraint((T0492)V15.CB, (T0492)I51.CB) [> -999.000 = 6.500 < 8.500] w=0.130 to two_stage # Constraint # added constraint: bonus constraint((T0492)R42.CB, (T0492)Y58.CB) [> -999.000 = 6.500 < 8.500] w=0.131 to two_stage # Constraint # added constraint: bonus constraint((T0492)K43.CB, (T0492)Y58.CB) [> -999.000 = 6.500 < 8.500] w=0.129 to two_stage # Constraint # added constraint: bonus constraint((T0492)V13.CB, (T0492)V55.CB) [> -999.000 = 6.500 < 8.500] w=0.128 to two_stage # Constraint # added constraint: bonus constraint((T0492)G36.CA, (T0492)N54.CB) [> -999.000 = 6.500 < 8.500] w=0.127 to two_stage # Constraint # added constraint: bonus constraint((T0492)P46.CB, (T0492)L60.CB) [> -999.000 = 6.500 < 8.500] w=0.126 to two_stage # Constraint # added constraint: bonus constraint((T0492)V55.CB, (T0492)A67.CB) [> -999.000 = 6.500 < 8.500] w=0.127 to two_stage # Constraint # added constraint: bonus constraint((T0492)R56.CB, (T0492)A67.CB) [> -999.000 = 6.500 < 8.500] w=0.127 to two_stage # Constraint # added constraint: bonus constraint((T0492)V13.CB, (T0492)M31.CB) [> -999.000 = 6.500 < 8.500] w=0.126 to two_stage # Constraint # added constraint: bonus constraint((T0492)R42.CB, (T0492)R56.CB) [> -999.000 = 6.500 < 8.500] w=0.126 to two_stage # Constraint # added constraint: bonus constraint((T0492)V15.CB, (T0492)L24.CB) [> -999.000 = 6.500 < 8.500] w=0.125 to two_stage # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)L18.CB) [> -999.000 = 6.500 < 8.500] w=0.124 to two_stage # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)I53.CB) [> -999.000 = 6.500 < 8.500] w=0.124 to two_stage # Constraint # added constraint: bonus constraint((T0492)I28.CB, (T0492)L60.CB) [> -999.000 = 6.500 < 8.500] w=0.124 to two_stage # Constraint # added constraint: bonus constraint((T0492)M31.CB, (T0492)L60.CB) [> -999.000 = 6.500 < 8.500] w=0.125 to two_stage # Constraint # added constraint: bonus constraint((T0492)V16.CB, (T0492)L60.CB) [> -999.000 = 6.500 < 8.500] w=0.123 to two_stage # Constraint # added constraint: bonus constraint((T0492)L18.CB, (T0492)I41.CB) [> -999.000 = 6.500 < 8.500] w=0.123 to two_stage # Constraint # added constraint: bonus constraint((T0492)C37.CB, (T0492)K64.CB) [> -999.000 = 6.500 < 8.500] w=0.124 to two_stage # Constraint # added constraint: bonus constraint((T0492)C37.CB, (T0492)S61.CB) [> -999.000 = 6.500 < 8.500] w=0.122 to two_stage # Constraint # added constraint: bonus constraint((T0492)I53.CB, (T0492)M69.CB) [> -999.000 = 6.500 < 8.500] w=0.122 to two_stage # Constraint # added constraint: bonus constraint((T0492)R56.CB, (T0492)M69.CB) [> -999.000 = 6.500 < 8.500] w=0.122 to two_stage # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)I39.CB) [> -999.000 = 6.500 < 8.500] w=0.120 to two_stage # Constraint # added constraint: bonus constraint((T0492)Q11.CB, (T0492)A45.CB) [> -999.000 = 6.500 < 8.500] w=0.121 to two_stage # Constraint # added constraint: bonus constraint((T0492)I41.CB, (T0492)R56.CB) [> -999.000 = 6.500 < 8.500] w=0.121 to two_stage # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)P50.CB) [> -999.000 = 6.500 < 8.500] w=0.119 to two_stage # Constraint # added constraint: bonus constraint((T0492)L18.CB, (T0492)Y40.CB) [> -999.000 = 6.500 < 8.500] w=0.119 to two_stage # Constraint # added constraint: bonus constraint((T0492)L18.CB, (T0492)P50.CB) [> -999.000 = 6.500 < 8.500] w=0.119 to two_stage # Constraint # added constraint: bonus constraint((T0492)L18.CB, (T0492)L60.CB) [> -999.000 = 6.500 < 8.500] w=0.119 to two_stage # Constraint # added constraint: bonus constraint((T0492)I39.CB, (T0492)I51.CB) [> -999.000 = 6.500 < 8.500] w=0.120 to two_stage # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)M31.CB) [> -999.000 = 6.500 < 8.500] w=0.117 to two_stage # Constraint # added constraint: bonus constraint((T0492)V16.CB, (T0492)S61.CB) [> -999.000 = 6.500 < 8.500] w=0.118 to two_stage # Constraint # added constraint: bonus constraint((T0492)V13.CB, (T0492)Q52.CB) [> -999.000 = 6.500 < 8.500] w=0.117 to two_stage # Constraint # added constraint: bonus constraint((T0492)V15.CB, (T0492)M31.CB) [> -999.000 = 6.500 < 8.500] w=0.117 to two_stage # Constraint # added constraint: bonus constraint((T0492)V15.CB, (T0492)S61.CB) [> -999.000 = 6.500 < 8.500] w=0.117 to two_stage # Constraint # added constraint: bonus constraint((T0492)R35.CB, (T0492)V55.CB) [> -999.000 = 6.500 < 8.500] w=0.116 to two_stage # Constraint # added constraint: bonus constraint((T0492)R42.CB, (T0492)R63.CB) [> -999.000 = 6.500 < 8.500] w=0.117 to two_stage # Constraint # added constraint: bonus constraint((T0492)K17.CB, (T0492)I51.CB) [> -999.000 = 6.500 < 8.500] w=0.116 to two_stage # Constraint # added constraint: bonus constraint((T0492)L18.CB, (T0492)I51.CB) [> -999.000 = 6.500 < 8.500] w=0.116 to two_stage # Constraint # added constraint: bonus constraint((T0492)I41.CB, (T0492)A66.CB) [> -999.000 = 6.500 < 8.500] w=0.116 to two_stage # Constraint # added constraint: bonus constraint((T0492)P50.CB, (T0492)E59.CB) [> -999.000 = 6.500 < 8.500] w=0.116 to two_stage # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)R27.CB) [> -999.000 = 6.500 < 8.500] w=0.114 to two_stage # Constraint # added constraint: bonus constraint((T0492)V16.CB, (T0492)L62.CB) [> -999.000 = 6.500 < 8.500] w=0.115 to two_stage # Constraint # added constraint: bonus constraint((T0492)M29.CB, (T0492)L62.CB) [> -999.000 = 6.500 < 8.500] w=0.115 to two_stage # Constraint # added constraint: bonus constraint((T0492)V44.CB, (T0492)N54.CB) [> -999.000 = 6.500 < 8.500] w=0.114 to two_stage # Constraint # added constraint: bonus constraint((T0492)I51.CB, (T0492)S65.CB) [> -999.000 = 6.500 < 8.500] w=0.114 to two_stage # Constraint # added constraint: bonus constraint((T0492)Q11.CB, (T0492)R56.CB) [> -999.000 = 6.500 < 8.500] w=0.113 to two_stage # Constraint # added constraint: bonus constraint((T0492)G32.CA, (T0492)L62.CB) [> -999.000 = 6.500 < 8.500] w=0.112 to two_stage # Constraint # added constraint: bonus constraint((T0492)Q52.CB, (T0492)M69.CB) [> -999.000 = 6.500 < 8.500] w=0.113 to two_stage # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)L62.CB) [> -999.000 = 6.500 < 8.500] w=0.109 to two_stage # Constraint # added constraint: bonus constraint((T0492)V13.CB, (T0492)L62.CB) [> -999.000 = 6.500 < 8.500] w=0.109 to two_stage # Constraint # added constraint: bonus constraint((T0492)V15.CB, (T0492)G36.CA) [> -999.000 = 6.500 < 8.500] w=0.110 to two_stage # Constraint # added constraint: bonus constraint((T0492)V16.CB, (T0492)I28.CB) [> -999.000 = 6.500 < 8.500] w=0.110 to two_stage # Constraint # added constraint: bonus constraint((T0492)G36.CA, (T0492)P46.CB) [> -999.000 = 6.500 < 8.500] w=0.111 to two_stage # Constraint # added constraint: bonus constraint((T0492)V16.CB, (T0492)C37.CB) [> -999.000 = 6.500 < 8.500] w=0.109 to two_stage # Constraint # added constraint: bonus constraint((T0492)A45.CB, (T0492)L62.CB) [> -999.000 = 6.500 < 8.500] w=0.108 to two_stage # Constraint # added constraint: bonus constraint((T0492)P50.CB, (T0492)L60.CB) [> -999.000 = 6.500 < 8.500] w=0.109 to two_stage # Constraint # added constraint: bonus constraint((T0492)I28.CB, (T0492)P50.CB) [> -999.000 = 6.500 < 8.500] w=0.107 to two_stage # Constraint # added constraint: bonus constraint((T0492)M29.CB, (T0492)I39.CB) [> -999.000 = 6.500 < 8.500] w=0.108 to two_stage # Constraint # added constraint: bonus constraint((T0492)I33.CB, (T0492)V44.CB) [> -999.000 = 6.500 < 8.500] w=0.107 to two_stage # Constraint # added constraint: bonus constraint((T0492)K43.CB, (T0492)R63.CB) [> -999.000 = 6.500 < 8.500] w=0.108 to two_stage # Constraint # added constraint: bonus constraint((T0492)A45.CB, (T0492)I70.CB) [> -999.000 = 6.500 < 8.500] w=0.108 to two_stage # Constraint # added constraint: bonus constraint((T0492)Q11.CB, (T0492)G20.CA) [> -999.000 = 6.500 < 8.500] w=0.106 to two_stage # Constraint # added constraint: bonus constraint((T0492)Q11.CB, (T0492)V55.CB) [> -999.000 = 6.500 < 8.500] w=0.106 to two_stage # Constraint # added constraint: bonus constraint((T0492)V13.CB, (T0492)R56.CB) [> -999.000 = 6.500 < 8.500] w=0.107 to two_stage # Constraint # added constraint: bonus constraint((T0492)K25.CB, (T0492)I53.CB) [> -999.000 = 6.500 < 8.500] w=0.107 to two_stage # Constraint # added constraint: bonus constraint((T0492)P46.CB, (T0492)S61.CB) [> -999.000 = 6.500 < 8.500] w=0.107 to two_stage # Constraint # added constraint: bonus constraint((T0492)P50.CB, (T0492)A66.CB) [> -999.000 = 6.500 < 8.500] w=0.108 to two_stage # Constraint # added constraint: bonus constraint((T0492)T12.CB, (T0492)S61.CB) [> -999.000 = 6.500 < 8.500] w=0.105 to two_stage # Constraint # added constraint: bonus constraint((T0492)T12.CB, (T0492)R63.CB) [> -999.000 = 6.500 < 8.500] w=0.105 to two_stage # Constraint # added constraint: bonus constraint((T0492)K14.CB, (T0492)Q52.CB) [> -999.000 = 6.500 < 8.500] w=0.105 to two_stage # Constraint # added constraint: bonus constraint((T0492)L18.CB, (T0492)I28.CB) [> -999.000 = 6.500 < 8.500] w=0.105 to two_stage # Constraint # added constraint: bonus constraint((T0492)V44.CB, (T0492)I70.CB) [> -999.000 = 6.500 < 8.500] w=0.105 to two_stage # Constraint # added constraint: bonus constraint((T0492)L47.CB, (T0492)L62.CB) [> -999.000 = 6.500 < 8.500] w=0.106 to two_stage # Constraint # added constraint: bonus constraint((T0492)I53.CB, (T0492)K64.CB) [> -999.000 = 6.500 < 8.500] w=0.106 to two_stage # Constraint # added constraint: bonus constraint((T0492)I33.CB, (T0492)Q52.CB) [> -999.000 = 6.500 < 8.500] w=0.105 to two_stage # Constraint # added constraint: bonus constraint((T0492)T12.CB, (T0492)I53.CB) [> -999.000 = 6.500 < 8.500] w=0.102 to two_stage # Constraint # added constraint: bonus constraint((T0492)T12.CB, (T0492)L62.CB) [> -999.000 = 6.500 < 8.500] w=0.101 to two_stage # Constraint # added constraint: bonus constraint((T0492)V16.CB, (T0492)P50.CB) [> -999.000 = 6.500 < 8.500] w=0.102 to two_stage # Constraint # added constraint: bonus constraint((T0492)I28.CB, (T0492)S61.CB) [> -999.000 = 6.500 < 8.500] w=0.102 to two_stage # Constraint # added constraint: bonus constraint((T0492)I33.CB, (T0492)A45.CB) [> -999.000 = 6.500 < 8.500] w=0.102 to two_stage # Constraint # added constraint: bonus constraint((T0492)G36.CA, (T0492)R56.CB) [> -999.000 = 6.500 < 8.500] w=0.102 to two_stage # Constraint # added constraint: bonus constraint((T0492)Y40.CB, (T0492)P50.CB) [> -999.000 = 6.500 < 8.500] w=0.102 to two_stage # Constraint # added constraint: bonus constraint((T0492)K14.CB, (T0492)I70.CB) [> -999.000 = 6.500 < 8.500] w=0.101 to two_stage # Constraint # added constraint: bonus constraint((T0492)V16.CB, (T0492)I33.CB) [> -999.000 = 6.500 < 8.500] w=0.101 to two_stage # Constraint # added constraint: bonus constraint((T0492)G36.CA, (T0492)K64.CB) [> -999.000 = 6.500 < 8.500] w=0.101 to two_stage # Constraint # added constraint: bonus constraint((T0492)V44.CB, (T0492)L62.CB) [> -999.000 = 6.500 < 8.500] w=0.102 to two_stage # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)Q52.CB) [> -999.000 = 6.500 < 8.500] w=0.100 to two_stage # Constraint # added constraint: bonus constraint((T0492)E38.CB, (T0492)K64.CB) [> -999.000 = 6.500 < 8.500] w=0.100 to two_stage # Constraint # added constraint: bonus constraint((T0492)Q11.CB, (T0492)R63.CB) [> -999.000 = 6.500 < 8.500] w=0.099 to two_stage # Constraint # added constraint: bonus constraint((T0492)V13.CB, (T0492)R27.CB) [> -999.000 = 6.500 < 8.500] w=0.098 to two_stage # Constraint # added constraint: bonus constraint((T0492)K14.CB, (T0492)K43.CB) [> -999.000 = 6.500 < 8.500] w=0.098 to two_stage # Constraint # added constraint: bonus constraint((T0492)K14.CB, (T0492)V55.CB) [> -999.000 = 6.500 < 8.500] w=0.098 to two_stage # Constraint # added constraint: bonus constraint((T0492)I33.CB, (T0492)K43.CB) [> -999.000 = 6.500 < 8.500] w=0.098 to two_stage # Constraint # added constraint: bonus constraint((T0492)G36.CA, (T0492)A45.CB) [> -999.000 = 6.500 < 8.500] w=0.099 to two_stage # Constraint # added constraint: bonus constraint((T0492)G32.CA, (T0492)V55.CB) [> -999.000 = 6.500 < 8.500] w=0.097 to two_stage # Constraint # added constraint: bonus constraint((T0492)E38.CB, (T0492)L60.CB) [> -999.000 = 6.500 < 8.500] w=0.098 to two_stage # Constraint # added constraint: bonus constraint((T0492)I39.CB, (T0492)R63.CB) [> -999.000 = 6.500 < 8.500] w=0.098 to two_stage # Constraint # added constraint: bonus constraint((T0492)Y40.CB, (T0492)L60.CB) [> -999.000 = 6.500 < 8.500] w=0.099 to two_stage # Constraint # added constraint: bonus constraint((T0492)K43.CB, (T0492)R56.CB) [> -999.000 = 6.500 < 8.500] w=0.098 to two_stage # Constraint # added constraint: bonus constraint((T0492)A45.CB, (T0492)A67.CB) [> -999.000 = 6.500 < 8.500] w=0.098 to two_stage # Constraint # added constraint: bonus constraint((T0492)C9.CB, (T0492)V55.CB) [> -999.000 = 6.500 < 8.500] w=0.096 to two_stage # Constraint # added constraint: bonus constraint((T0492)K14.CB, (T0492)I39.CB) [> -999.000 = 6.500 < 8.500] w=0.095 to two_stage # Constraint # added constraint: bonus constraint((T0492)K25.CB, (T0492)I41.CB) [> -999.000 = 6.500 < 8.500] w=0.096 to two_stage # Constraint # added constraint: bonus constraint((T0492)P50.CB, (T0492)A67.CB) [> -999.000 = 6.500 < 8.500] w=0.097 to two_stage # Constraint # added constraint: bonus constraint((T0492)V15.CB, (T0492)V44.CB) [> -999.000 = 6.500 < 8.500] w=0.095 to two_stage # Constraint # added constraint: bonus constraint((T0492)V16.CB, (T0492)R27.CB) [> -999.000 = 6.500 < 8.500] w=0.094 to two_stage # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)V55.CB) [> -999.000 = 6.500 < 8.500] w=0.093 to two_stage # Constraint # added constraint: bonus constraint((T0492)A7.CB, (T0492)I28.CB) [> -999.000 = 6.500 < 8.500] w=0.094 to two_stage # Constraint # added constraint: bonus constraint((T0492)G10.CA, (T0492)G57.CA) [> -999.000 = 6.500 < 8.500] w=0.094 to two_stage # Constraint # added constraint: bonus constraint((T0492)I33.CB, (T0492)S61.CB) [> -999.000 = 6.500 < 8.500] w=0.095 to two_stage # Constraint # added constraint: bonus constraint((T0492)R35.CB, (T0492)L62.CB) [> -999.000 = 6.500 < 8.500] w=0.095 to two_stage # Constraint # added constraint: bonus constraint((T0492)R42.CB, (T0492)A67.CB) [> -999.000 = 6.500 < 8.500] w=0.095 to two_stage # Constraint # added constraint: bonus constraint((T0492)K17.CB, (T0492)I39.CB) [> -999.000 = 6.500 < 8.500] w=0.094 to two_stage # Constraint # added constraint: bonus constraint((T0492)V44.CB, (T0492)Y58.CB) [> -999.000 = 6.500 < 8.500] w=0.093 to two_stage # Constraint # added constraint: bonus constraint((T0492)A45.CB, (T0492)G57.CA) [> -999.000 = 6.500 < 8.500] w=0.093 to two_stage # Constraint # added constraint: bonus constraint((T0492)L47.CB, (T0492)A67.CB) [> -999.000 = 6.500 < 8.500] w=0.094 to two_stage # Constraint # added constraint: bonus constraint((T0492)I53.CB, (T0492)A66.CB) [> -999.000 = 6.500 < 8.500] w=0.094 to two_stage # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)S61.CB) [> -999.000 = 6.500 < 8.500] w=0.090 to two_stage # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)A67.CB) [> -999.000 = 6.500 < 8.500] w=0.090 to two_stage # Constraint # added constraint: bonus constraint((T0492)A7.CB, (T0492)M31.CB) [> -999.000 = 6.500 < 8.500] w=0.090 to two_stage # Constraint # added constraint: bonus constraint((T0492)T12.CB, (T0492)K64.CB) [> -999.000 = 6.500 < 8.500] w=0.091 to two_stage # Constraint # added constraint: bonus constraint((T0492)G32.CA, (T0492)A67.CB) [> -999.000 = 6.500 < 8.500] w=0.092 to two_stage # Constraint # added constraint: bonus constraint((T0492)K14.CB, (T0492)E38.CB) [> -999.000 = 6.500 < 8.500] w=0.090 to two_stage # Constraint # added constraint: bonus constraint((T0492)K25.CB, (T0492)L62.CB) [> -999.000 = 6.500 < 8.500] w=0.090 to two_stage # Constraint # added constraint: bonus constraint((T0492)I28.CB, (T0492)A67.CB) [> -999.000 = 6.500 < 8.500] w=0.090 to two_stage # Constraint # added constraint: bonus constraint((T0492)I41.CB, (T0492)R63.CB) [> -999.000 = 6.500 < 8.500] w=0.091 to two_stage # Constraint # added constraint: bonus constraint((T0492)A45.CB, (T0492)N54.CB) [> -999.000 = 6.500 < 8.500] w=0.091 to two_stage # Constraint # added constraint: bonus constraint((T0492)M31.CB, (T0492)I53.CB) [> -999.000 = 6.500 < 8.500] w=0.090 to two_stage # Constraint # added constraint: bonus constraint((T0492)A45.CB, (T0492)V55.CB) [> -999.000 = 6.500 < 8.500] w=0.091 to two_stage # Constraint # added constraint: bonus constraint((T0492)A7.CB, (T0492)L24.CB) [> -999.000 = 6.500 < 8.500] w=0.088 to two_stage # Constraint # added constraint: bonus constraint((T0492)G10.CA, (T0492)P46.CB) [> -999.000 = 6.500 < 8.500] w=0.089 to two_stage # Constraint # added constraint: bonus constraint((T0492)V16.CB, (T0492)V44.CB) [> -999.000 = 6.500 < 8.500] w=0.089 to two_stage # Constraint # added constraint: bonus constraint((T0492)Q11.CB, (T0492)P46.CB) [> -999.000 = 6.500 < 8.500] w=0.088 to two_stage # Constraint # added constraint: bonus constraint((T0492)K14.CB, (T0492)A45.CB) [> -999.000 = 6.500 < 8.500] w=0.087 to two_stage # Constraint # added constraint: bonus constraint((T0492)L18.CB, (T0492)C37.CB) [> -999.000 = 6.500 < 8.500] w=0.087 to two_stage # Constraint # added constraint: bonus constraint((T0492)K25.CB, (T0492)V55.CB) [> -999.000 = 6.500 < 8.500] w=0.088 to two_stage # Constraint # added constraint: bonus constraint((T0492)G32.CA, (T0492)S61.CB) [> -999.000 = 6.500 < 8.500] w=0.089 to two_stage # Constraint # added constraint: bonus constraint((T0492)G32.CA, (T0492)R63.CB) [> -999.000 = 6.500 < 8.500] w=0.088 to two_stage # Constraint # added constraint: bonus constraint((T0492)V13.CB, (T0492)R63.CB) [> -999.000 = 6.500 < 8.500] w=0.086 to two_stage # Constraint # added constraint: bonus constraint((T0492)L24.CB, (T0492)I39.CB) [> -999.000 = 6.500 < 8.500] w=0.087 to two_stage # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)C37.CB) [> -999.000 = 6.500 < 8.500] w=0.085 to two_stage # Constraint # added constraint: bonus constraint((T0492)A7.CB, (T0492)K25.CB) [> -999.000 = 6.500 < 8.500] w=0.085 to two_stage # Constraint # added constraint: bonus constraint((T0492)A7.CB, (T0492)V55.CB) [> -999.000 = 6.500 < 8.500] w=0.085 to two_stage # Constraint # added constraint: bonus constraint((T0492)V15.CB, (T0492)A67.CB) [> -999.000 = 6.500 < 8.500] w=0.085 to two_stage # Constraint # added constraint: bonus constraint((T0492)I28.CB, (T0492)I51.CB) [> -999.000 = 6.500 < 8.500] w=0.086 to two_stage # Constraint # added constraint: bonus constraint((T0492)M29.CB, (T0492)V55.CB) [> -999.000 = 6.500 < 8.500] w=0.086 to two_stage # Constraint # added constraint: bonus constraint((T0492)I33.CB, (T0492)N54.CB) [> -999.000 = 6.500 < 8.500] w=0.085 to two_stage # Constraint # added constraint: bonus constraint((T0492)E38.CB, (T0492)I70.CB) [> -999.000 = 6.500 < 8.500] w=0.086 to two_stage # Constraint # added constraint: bonus constraint((T0492)I41.CB, (T0492)A67.CB) [> -999.000 = 6.500 < 8.500] w=0.086 to two_stage # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)E38.CB) [> -999.000 = 6.500 < 8.500] w=0.083 to two_stage # Constraint # added constraint: bonus constraint((T0492)A7.CB, (T0492)I41.CB) [> -999.000 = 6.500 < 8.500] w=0.084 to two_stage # Constraint # added constraint: bonus constraint((T0492)C9.CB, (T0492)R35.CB) [> -999.000 = 6.500 < 8.500] w=0.084 to two_stage # Constraint # added constraint: bonus constraint((T0492)Q11.CB, (T0492)S61.CB) [> -999.000 = 6.500 < 8.500] w=0.084 to two_stage # Constraint # added constraint: bonus constraint((T0492)V13.CB, (T0492)I39.CB) [> -999.000 = 6.500 < 8.500] w=0.084 to two_stage # Constraint # added constraint: bonus constraint((T0492)K14.CB, (T0492)R56.CB) [> -999.000 = 6.500 < 8.500] w=0.083 to two_stage # Constraint # added constraint: bonus constraint((T0492)L18.CB, (T0492)G36.CA) [> -999.000 = 6.500 < 8.500] w=0.084 to two_stage # Constraint # added constraint: bonus constraint((T0492)V44.CB, (T0492)M69.CB) [> -999.000 = 6.500 < 8.500] w=0.085 to two_stage # Constraint # added constraint: bonus constraint((T0492)D49.CB, (T0492)L60.CB) [> -999.000 = 6.500 < 8.500] w=0.085 to two_stage # Constraint # added constraint: bonus constraint((T0492)A7.CB, (T0492)I39.CB) [> -999.000 = 6.500 < 8.500] w=0.082 to two_stage # Constraint # added constraint: bonus constraint((T0492)C9.CB, (T0492)L62.CB) [> -999.000 = 6.500 < 8.500] w=0.082 to two_stage # Constraint # added constraint: bonus constraint((T0492)T12.CB, (T0492)P46.CB) [> -999.000 = 6.500 < 8.500] w=0.082 to two_stage # Constraint # added constraint: bonus constraint((T0492)L24.CB, (T0492)V55.CB) [> -999.000 = 6.500 < 8.500] w=0.083 to two_stage # Constraint # added constraint: bonus constraint((T0492)I41.CB, (T0492)M69.CB) [> -999.000 = 6.500 < 8.500] w=0.083 to two_stage # Constraint # added constraint: bonus constraint((T0492)L47.CB, (T0492)R63.CB) [> -999.000 = 6.500 < 8.500] w=0.082 to two_stage # Constraint # added constraint: bonus constraint((T0492)G48.CA, (T0492)L62.CB) [> -999.000 = 6.500 < 8.500] w=0.083 to two_stage # Constraint # added constraint: bonus constraint((T0492)C9.CB, (T0492)R63.CB) [> -999.000 = 6.500 < 8.500] w=0.081 to two_stage # Constraint # added constraint: bonus constraint((T0492)G10.CA, (T0492)V44.CB) [> -999.000 = 6.500 < 8.500] w=0.082 to two_stage # Constraint # added constraint: bonus constraint((T0492)G10.CA, (T0492)N54.CB) [> -999.000 = 6.500 < 8.500] w=0.081 to two_stage # Constraint # added constraint: bonus constraint((T0492)K14.CB, (T0492)I28.CB) [> -999.000 = 6.500 < 8.500] w=0.081 to two_stage # Constraint # added constraint: bonus constraint((T0492)L24.CB, (T0492)I41.CB) [> -999.000 = 6.500 < 8.500] w=0.082 to two_stage # Constraint # added constraint: bonus constraint((T0492)K25.CB, (T0492)S61.CB) [> -999.000 = 6.500 < 8.500] w=0.081 to two_stage # Constraint # added constraint: bonus constraint((T0492)P50.CB, (T0492)S65.CB) [> -999.000 = 6.500 < 8.500] w=0.082 to two_stage # Constraint # added constraint: bonus constraint((T0492)Q52.CB, (T0492)A67.CB) [> -999.000 = 6.500 < 8.500] w=0.082 to two_stage # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)Y40.CB) [> -999.000 = 6.500 < 8.500] w=0.079 to two_stage # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)L60.CB) [> -999.000 = 6.500 < 8.500] w=0.080 to two_stage # Constraint # added constraint: bonus constraint((T0492)Q11.CB, (T0492)I41.CB) [> -999.000 = 6.500 < 8.500] w=0.080 to two_stage # Constraint # added constraint: bonus constraint((T0492)M29.CB, (T0492)I70.CB) [> -999.000 = 6.500 < 8.500] w=0.080 to two_stage # Constraint # added constraint: bonus constraint((T0492)Y40.CB, (T0492)E59.CB) [> -999.000 = 6.500 < 8.500] w=0.081 to two_stage # Constraint # added constraint: bonus constraint((T0492)K43.CB, (T0492)G57.CA) [> -999.000 = 6.500 < 8.500] w=0.080 to two_stage # Constraint # added constraint: bonus constraint((T0492)A7.CB, (T0492)I70.CB) [> -999.000 = 6.500 < 8.500] w=0.079 to two_stage # Constraint # added constraint: bonus constraint((T0492)Q11.CB, (T0492)N54.CB) [> -999.000 = 6.500 < 8.500] w=0.079 to two_stage # Constraint # added constraint: bonus constraint((T0492)V13.CB, (T0492)S61.CB) [> -999.000 = 6.500 < 8.500] w=0.079 to two_stage # Constraint # added constraint: bonus constraint((T0492)A7.CB, (T0492)L18.CB) [> -999.000 = 6.500 < 8.500] w=0.077 to two_stage # Constraint # added constraint: bonus constraint((T0492)A7.CB, (T0492)L62.CB) [> -999.000 = 6.500 < 8.500] w=0.078 to two_stage # Constraint # added constraint: bonus constraint((T0492)V13.CB, (T0492)L24.CB) [> -999.000 = 6.500 < 8.500] w=0.079 to two_stage # Constraint # added constraint: bonus constraint((T0492)K14.CB, (T0492)S61.CB) [> -999.000 = 6.500 < 8.500] w=0.078 to two_stage # Constraint # added constraint: bonus constraint((T0492)V16.CB, (T0492)M69.CB) [> -999.000 = 6.500 < 8.500] w=0.079 to two_stage # Constraint # added constraint: bonus constraint((T0492)L18.CB, (T0492)M31.CB) [> -999.000 = 6.500 < 8.500] w=0.079 to two_stage # Constraint # added constraint: bonus constraint((T0492)R35.CB, (T0492)R63.CB) [> -999.000 = 6.500 < 8.500] w=0.079 to two_stage # Constraint # added constraint: bonus constraint((T0492)I39.CB, (T0492)A67.CB) [> -999.000 = 6.500 < 8.500] w=0.079 to two_stage # Constraint # added constraint: bonus constraint((T0492)N54.CB, (T0492)M69.CB) [> -999.000 = 6.500 < 8.500] w=0.080 to two_stage # Constraint # added constraint: bonus constraint((T0492)L18.CB, (T0492)L62.CB) [> -999.000 = 6.500 < 8.500] w=0.079 to two_stage # Constraint # added constraint: bonus constraint((T0492)I33.CB, (T0492)R63.CB) [> -999.000 = 6.500 < 8.500] w=0.078 to two_stage # Constraint # added constraint: bonus constraint((T0492)I33.CB, (T0492)A67.CB) [> -999.000 = 6.500 < 8.500] w=0.078 to two_stage # Constraint # added constraint: bonus constraint((T0492)I51.CB, (T0492)M69.CB) [> -999.000 = 6.500 < 8.500] w=0.079 to two_stage # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)I33.CB) [> -999.000 = 6.500 < 8.500] w=0.076 to two_stage # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)N54.CB) [> -999.000 = 6.500 < 8.500] w=0.076 to two_stage # Constraint # added constraint: bonus constraint((T0492)A7.CB, (T0492)I53.CB) [> -999.000 = 6.500 < 8.500] w=0.076 to two_stage # Constraint # added constraint: bonus constraint((T0492)K17.CB, (T0492)I41.CB) [> -999.000 = 6.500 < 8.500] w=0.077 to two_stage # Constraint # added constraint: bonus constraint((T0492)L18.CB, (T0492)S61.CB) [> -999.000 = 6.500 < 8.500] w=0.077 to two_stage # Constraint # added constraint: bonus constraint((T0492)H19.CB, (T0492)P50.CB) [> -999.000 = 6.500 < 8.500] w=0.077 to two_stage # Constraint # added constraint: bonus constraint((T0492)T34.CB, (T0492)L47.CB) [> -999.000 = 6.500 < 8.500] w=0.077 to two_stage # Constraint # added constraint: bonus constraint((T0492)R35.CB, (T0492)S61.CB) [> -999.000 = 6.500 < 8.500] w=0.077 to two_stage # Constraint # added constraint: bonus constraint((T0492)I39.CB, (T0492)P50.CB) [> -999.000 = 6.500 < 8.500] w=0.077 to two_stage # Constraint # added constraint: bonus constraint((T0492)K25.CB, (T0492)I70.CB) [> -999.000 = 6.500 < 8.500] w=0.076 to two_stage # Constraint # added constraint: bonus constraint((T0492)I33.CB, (T0492)R42.CB) [> -999.000 = 6.500 < 8.500] w=0.077 to two_stage # Constraint # added constraint: bonus constraint((T0492)K43.CB, (T0492)V55.CB) [> -999.000 = 6.500 < 8.500] w=0.077 to two_stage # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)I51.CB) [> -999.000 = 6.500 < 8.500] w=0.075 to two_stage # Constraint # added constraint: bonus constraint((T0492)A7.CB, (T0492)S61.CB) [> -999.000 = 6.500 < 8.500] w=0.075 to two_stage # Constraint # added constraint: bonus constraint((T0492)L24.CB, (T0492)I53.CB) [> -999.000 = 6.500 < 8.500] w=0.076 to two_stage # Constraint # added constraint: bonus constraint((T0492)L24.CB, (T0492)L60.CB) [> -999.000 = 6.500 < 8.500] w=0.076 to two_stage # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)L24.CB) [> -999.000 = 6.500 < 8.500] w=0.073 to two_stage # Constraint # added constraint: bonus constraint((T0492)G10.CA, (T0492)K43.CB) [> -999.000 = 6.500 < 8.500] w=0.074 to two_stage # Constraint # added constraint: bonus constraint((T0492)K14.CB, (T0492)L62.CB) [> -999.000 = 6.500 < 8.500] w=0.074 to two_stage # Constraint # added constraint: bonus constraint((T0492)M31.CB, (T0492)V55.CB) [> -999.000 = 6.500 < 8.500] w=0.074 to two_stage # Constraint # added constraint: bonus constraint((T0492)G36.CA, (T0492)S65.CB) [> -999.000 = 6.500 < 8.500] w=0.075 to two_stage # Constraint # added constraint: bonus constraint((T0492)Y40.CB, (T0492)G57.CA) [> -999.000 = 6.500 < 8.500] w=0.074 to two_stage # Constraint # added constraint: bonus constraint((T0492)Y40.CB, (T0492)M69.CB) [> -999.000 = 6.500 < 8.500] w=0.075 to two_stage # Constraint # added constraint: bonus constraint((T0492)Q11.CB, (T0492)K64.CB) [> -999.000 = 6.500 < 8.500] w=0.073 to two_stage # Constraint # added constraint: bonus constraint((T0492)T12.CB, (T0492)T21.CB) [> -999.000 = 6.500 < 8.500] w=0.073 to two_stage # Constraint # added constraint: bonus constraint((T0492)K14.CB, (T0492)L24.CB) [> -999.000 = 6.500 < 8.500] w=0.073 to two_stage # Constraint # added constraint: bonus constraint((T0492)L24.CB, (T0492)I70.CB) [> -999.000 = 6.500 < 8.500] w=0.073 to two_stage # Constraint # added constraint: bonus constraint((T0492)I41.CB, (T0492)Y58.CB) [> -999.000 = 6.500 < 8.500] w=0.074 to two_stage # Constraint # added constraint: bonus constraint((T0492)V55.CB, (T0492)M69.CB) [> -999.000 = 6.500 < 8.500] w=0.074 to two_stage # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)R42.CB) [> -999.000 = 6.500 < 8.500] w=0.071 to two_stage # Constraint # added constraint: bonus constraint((T0492)A7.CB, (T0492)R27.CB) [> -999.000 = 6.500 < 8.500] w=0.071 to two_stage # Constraint # added constraint: bonus constraint((T0492)C9.CB, (T0492)G57.CA) [> -999.000 = 6.500 < 8.500] w=0.070 to two_stage # Constraint # added constraint: bonus constraint((T0492)G10.CA, (T0492)A45.CB) [> -999.000 = 6.500 < 8.500] w=0.071 to two_stage # Constraint # added constraint: bonus constraint((T0492)T12.CB, (T0492)L24.CB) [> -999.000 = 6.500 < 8.500] w=0.071 to two_stage # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)A45.CB) [> -999.000 = 6.500 < 8.500] w=0.069 to two_stage # Constraint # added constraint: bonus constraint((T0492)R5.CB, (T0492)L18.CB) [> -999.000 = 6.500 < 8.500] w=0.069 to two_stage # Constraint # added constraint: bonus constraint((T0492)V15.CB, (T0492)E59.CB) [> -999.000 = 6.500 < 8.500] w=0.070 to two_stage # Constraint # added constraint: bonus constraint((T0492)V15.CB, (T0492)M69.CB) [> -999.000 = 6.500 < 8.500] w=0.071 to two_stage # Constraint # added constraint: bonus constraint((T0492)K17.CB, (T0492)N54.CB) [> -999.000 = 6.500 < 8.500] w=0.071 to two_stage # Constraint # added constraint: bonus constraint((T0492)L18.CB, (T0492)E59.CB) [> -999.000 = 6.500 < 8.500] w=0.071 to two_stage # Constraint # added constraint: bonus constraint((T0492)K25.CB, (T0492)R35.CB) [> -999.000 = 6.500 < 8.500] w=0.071 to two_stage # Constraint # added constraint: bonus constraint((T0492)K25.CB, (T0492)L60.CB) [> -999.000 = 6.500 < 8.500] w=0.072 to two_stage # Constraint # added constraint: bonus constraint((T0492)I28.CB, (T0492)Y40.CB) [> -999.000 = 6.500 < 8.500] w=0.072 to two_stage # Constraint # added constraint: bonus constraint((T0492)M29.CB, (T0492)A67.CB) [> -999.000 = 6.500 < 8.500] w=0.072 to two_stage # Constraint # added constraint: bonus constraint((T0492)E38.CB, (T0492)L47.CB) [> -999.000 = 6.500 < 8.500] w=0.073 to two_stage # Constraint # added constraint: bonus constraint((T0492)R27.CB, (T0492)I41.CB) [> -999.000 = 6.500 < 8.500] w=0.071 to two_stage # Constraint # added constraint: bonus constraint((T0492)G32.CA, (T0492)P46.CB) [> -999.000 = 6.500 < 8.500] w=0.072 to two_stage # Constraint # added constraint: bonus constraint((T0492)T34.CB, (T0492)V44.CB) [> -999.000 = 6.500 < 8.500] w=0.071 to two_stage # Constraint # added constraint: bonus constraint((T0492)T34.CB, (T0492)S61.CB) [> -999.000 = 6.500 < 8.500] w=0.071 to two_stage # Constraint # added constraint: bonus constraint((T0492)R35.CB, (T0492)G57.CA) [> -999.000 = 6.500 < 8.500] w=0.072 to two_stage # Constraint # added constraint: bonus constraint((T0492)G48.CA, (T0492)S61.CB) [> -999.000 = 6.500 < 8.500] w=0.072 to two_stage # Constraint # added constraint: bonus constraint((T0492)G48.CA, (T0492)R63.CB) [> -999.000 = 6.500 < 8.500] w=0.072 to two_stage # Constraint # added constraint: bonus constraint((T0492)K25.CB, (T0492)Y40.CB) [> -999.000 = 6.500 < 8.500] w=0.070 to two_stage # Constraint # added constraint: bonus constraint((T0492)C9.CB, (T0492)P46.CB) [> -999.000 = 6.500 < 8.500] w=0.068 to two_stage # Constraint # added constraint: bonus constraint((T0492)C9.CB, (T0492)S61.CB) [> -999.000 = 6.500 < 8.500] w=0.069 to two_stage # Constraint # added constraint: bonus constraint((T0492)V16.CB, (T0492)K25.CB) [> -999.000 = 6.500 < 8.500] w=0.068 to two_stage # Constraint # added constraint: bonus constraint((T0492)K17.CB, (T0492)E38.CB) [> -999.000 = 6.500 < 8.500] w=0.069 to two_stage # Constraint # added constraint: bonus constraint((T0492)L18.CB, (T0492)N54.CB) [> -999.000 = 6.500 < 8.500] w=0.070 to two_stage # Constraint # added constraint: bonus constraint((T0492)K43.CB, (T0492)A67.CB) [> -999.000 = 6.500 < 8.500] w=0.071 to two_stage # Constraint # added constraint: bonus constraint((T0492)L18.CB, (T0492)V55.CB) [> -999.000 = 6.500 < 8.500] w=0.070 to two_stage # Constraint # added constraint: bonus constraint((T0492)R35.CB, (T0492)V44.CB) [> -999.000 = 6.500 < 8.500] w=0.070 to two_stage # Constraint # added constraint: bonus constraint((T0492)Y58.CB, (T0492)A67.CB) [> -999.000 = 6.500 < 8.500] w=0.070 to two_stage # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)V44.CB) [> -999.000 = 6.500 < 8.500] w=0.067 to two_stage # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)E59.CB) [> -999.000 = 6.500 < 8.500] w=0.067 to two_stage # Constraint # added constraint: bonus constraint((T0492)R5.CB, (T0492)V44.CB) [> -999.000 = 6.500 < 8.500] w=0.067 to two_stage # Constraint # added constraint: bonus constraint((T0492)C9.CB, (T0492)L24.CB) [> -999.000 = 6.500 < 8.500] w=0.067 to two_stage # Constraint # added constraint: bonus constraint((T0492)C9.CB, (T0492)V44.CB) [> -999.000 = 6.500 < 8.500] w=0.067 to two_stage # Constraint # added constraint: bonus constraint((T0492)V15.CB, (T0492)K25.CB) [> -999.000 = 6.500 < 8.500] w=0.066 to two_stage # Constraint # added constraint: bonus constraint((T0492)V16.CB, (T0492)K43.CB) [> -999.000 = 6.500 < 8.500] w=0.067 to two_stage # Constraint # added constraint: bonus constraint((T0492)V16.CB, (T0492)E59.CB) [> -999.000 = 6.500 < 8.500] w=0.067 to two_stage # Constraint # added constraint: bonus constraint((T0492)K25.CB, (T0492)P50.CB) [> -999.000 = 6.500 < 8.500] w=0.068 to two_stage # Constraint # added constraint: bonus constraint((T0492)M29.CB, (T0492)Y40.CB) [> -999.000 = 6.500 < 8.500] w=0.068 to two_stage # Constraint # added constraint: bonus constraint((T0492)I33.CB, (T0492)L47.CB) [> -999.000 = 6.500 < 8.500] w=0.068 to two_stage # Constraint # added constraint: bonus constraint((T0492)T34.CB, (T0492)V55.CB) [> -999.000 = 6.500 < 8.500] w=0.068 to two_stage # Constraint # added constraint: bonus constraint((T0492)G36.CA, (T0492)L47.CB) [> -999.000 = 6.500 < 8.500] w=0.068 to two_stage # Constraint # added constraint: bonus constraint((T0492)M31.CB, (T0492)L62.CB) [> -999.000 = 6.500 < 8.500] w=0.067 to two_stage # Constraint # added constraint: bonus constraint((T0492)T34.CB, (T0492)L62.CB) [> -999.000 = 6.500 < 8.500] w=0.067 to two_stage # Constraint # added constraint: bonus constraint((T0492)V15.CB, (T0492)K43.CB) [> -999.000 = 6.500 < 8.500] w=0.066 to two_stage # Constraint # added constraint: bonus constraint((T0492)V15.CB, (T0492)A45.CB) [> -999.000 = 6.500 < 8.500] w=0.065 to two_stage # Constraint # added constraint: bonus constraint((T0492)V15.CB, (T0492)Y58.CB) [> -999.000 = 6.500 < 8.500] w=0.066 to two_stage # Constraint # added constraint: bonus constraint((T0492)M29.CB, (T0492)P50.CB) [> -999.000 = 6.500 < 8.500] w=0.065 to two_stage # Constraint # added constraint: bonus constraint((T0492)M29.CB, (T0492)Q52.CB) [> -999.000 = 6.500 < 8.500] w=0.065 to two_stage # Constraint # added constraint: bonus constraint((T0492)C37.CB, (T0492)L47.CB) [> -999.000 = 6.500 < 8.500] w=0.066 to two_stage # Constraint # added constraint: bonus constraint((T0492)G32.CA, (T0492)L60.CB) [> -999.000 = 6.500 < 8.500] w=0.064 to two_stage # Constraint # added constraint: bonus constraint((T0492)I33.CB, (T0492)P46.CB) [> -999.000 = 6.500 < 8.500] w=0.065 to two_stage # Constraint # added constraint: bonus constraint((T0492)I33.CB, (T0492)P50.CB) [> -999.000 = 6.500 < 8.500] w=0.065 to two_stage # Constraint # added constraint: bonus constraint((T0492)I33.CB, (T0492)R56.CB) [> -999.000 = 6.500 < 8.500] w=0.065 to two_stage # Constraint # added constraint: bonus constraint((T0492)R42.CB, (T0492)G57.CA) [> -999.000 = 6.500 < 8.500] w=0.066 to two_stage # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)V16.CB) [> -999.000 = 6.500 < 8.500] w=0.064 to two_stage # Constraint # added constraint: bonus constraint((T0492)A7.CB, (T0492)L60.CB) [> -999.000 = 6.500 < 8.500] w=0.064 to two_stage # Constraint # added constraint: bonus constraint((T0492)V13.CB, (T0492)I70.CB) [> -999.000 = 6.500 < 8.500] w=0.064 to two_stage # Constraint # added constraint: bonus constraint((T0492)C9.CB, (T0492)L47.CB) [> -999.000 = 6.500 < 8.500] w=0.063 to two_stage # Constraint # added constraint: bonus constraint((T0492)V16.CB, (T0492)M31.CB) [> -999.000 = 6.500 < 8.500] w=0.064 to two_stage # Constraint # added constraint: bonus constraint((T0492)V13.CB, (T0492)K25.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0492)V13.CB, (T0492)T34.CB) [> -999.000 = 6.500 < 8.500] w=0.063 to two_stage # Constraint # added constraint: bonus constraint((T0492)K17.CB, (T0492)P50.CB) [> -999.000 = 6.500 < 8.500] w=0.063 to two_stage # Constraint # added constraint: bonus constraint((T0492)K25.CB, (T0492)I39.CB) [> -999.000 = 6.500 < 8.500] w=0.063 to two_stage # Constraint # added constraint: bonus constraint((T0492)M29.CB, (T0492)M69.CB) [> -999.000 = 6.500 < 8.500] w=0.063 to two_stage # Constraint # added constraint: bonus constraint((T0492)T34.CB, (T0492)L60.CB) [> -999.000 = 6.500 < 8.500] w=0.064 to two_stage # Constraint # added constraint: bonus constraint((T0492)K25.CB, (T0492)A67.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0492)M29.CB, (T0492)L47.CB) [> -999.000 = 6.500 < 8.500] w=0.063 to two_stage # Constraint # added constraint: bonus constraint((T0492)G20.CA, (T0492)P50.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0492)K25.CB, (T0492)Q52.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0492)M29.CB, (T0492)A45.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0492)M29.CB, (T0492)I51.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0492)T34.CB, (T0492)P46.CB) [> -999.000 = 6.500 < 8.500] w=0.061 to two_stage # Constraint # added constraint: bonus constraint((T0492)R35.CB, (T0492)P46.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0492)I39.CB, (T0492)E59.CB) [> -999.000 = 6.500 < 8.500] w=0.062 to two_stage # Constraint # added constraint: bonus constraint((T0492)I39.CB, (T0492)M69.CB) [> -999.000 = 6.500 < 8.500] w=0.063 to two_stage # Constraint # added constraint: bonus constraint((T0492)M29.CB, (T0492)K43.CB) [> -999.000 = 6.500 < 8.500] w=0.060 to two_stage # Constraint # added constraint: bonus constraint((T0492)I33.CB, (T0492)I51.CB) [> -999.000 = 6.500 < 8.500] w=0.061 to two_stage # Constraint # added constraint: bonus constraint((T0492)Y40.CB, (T0492)Y58.CB) [> -999.000 = 6.500 < 8.500] w=0.061 to two_stage # Constraint # added constraint: bonus constraint((T0492)R5.CB, (T0492)H19.CB) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((T0492)G10.CA, (T0492)K64.CB) [> -999.000 = 6.500 < 8.500] w=0.060 to two_stage # Constraint # added constraint: bonus constraint((T0492)V13.CB, (T0492)I33.CB) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((T0492)V15.CB, (T0492)T34.CB) [> -999.000 = 6.500 < 8.500] w=0.060 to two_stage # Constraint # added constraint: bonus constraint((T0492)L18.CB, (T0492)I33.CB) [> -999.000 = 6.500 < 8.500] w=0.060 to two_stage # Constraint # added constraint: bonus constraint((T0492)H19.CB, (T0492)I39.CB) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((T0492)L24.CB, (T0492)S61.CB) [> -999.000 = 6.500 < 8.500] w=0.060 to two_stage # Constraint # added constraint: bonus constraint((T0492)Y40.CB, (T0492)A67.CB) [> -999.000 = 6.500 < 8.500] w=0.060 to two_stage # Constraint # added constraint: bonus constraint((T0492)V44.CB, (T0492)V55.CB) [> -999.000 = 6.500 < 8.500] w=0.061 to two_stage # Constraint # added constraint: bonus constraint((T0492)V44.CB, (T0492)R63.CB) [> -999.000 = 6.500 < 8.500] w=0.061 to two_stage # Constraint # added constraint: bonus constraint((T0492)K25.CB, (T0492)C37.CB) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((T0492)G32.CA, (T0492)I41.CB) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((T0492)T34.CB, (T0492)R63.CB) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((T0492)L47.CB, (T0492)G57.CA) [> -999.000 = 6.500 < 8.500] w=0.060 to two_stage # Constraint # added constraint: bonus constraint((T0492)I28.CB, (T0492)R42.CB) [> -999.000 = 6.500 < 8.500] w=0.058 to two_stage # Constraint # added constraint: bonus constraint((T0492)G32.CA, (T0492)P50.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0492)I33.CB, (T0492)Y58.CB) [> -999.000 = 6.500 < 8.500] w=0.058 to two_stage # Constraint # added constraint: bonus constraint((T0492)R35.CB, (T0492)A45.CB) [> -999.000 = 6.500 < 8.500] w=0.058 to two_stage # Constraint # added constraint: bonus constraint((T0492)R35.CB, (T0492)N54.CB) [> -999.000 = 6.500 < 8.500] w=0.058 to two_stage # Constraint # added constraint: bonus constraint((T0492)V44.CB, (T0492)A67.CB) [> -999.000 = 6.500 < 8.500] w=0.058 to two_stage # Constraint # added constraint: bonus constraint((T0492)N54.CB, (T0492)A67.CB) [> -999.000 = 6.500 < 8.500] w=0.059 to two_stage # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)K17.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)H19.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)K25.CB) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0492)D6.CB, (T0492)V44.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0492)G10.CA, (T0492)I41.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0492)Q11.CB, (T0492)T21.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0492)Q11.CB, (T0492)T34.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0492)R56.CB, (T0492)E68.CB) [> -999.000 = 6.500 < 8.500] w=0.058 to two_stage # Constraint # added constraint: bonus constraint((T0492)L18.CB, (T0492)M69.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0492)M29.CB, (T0492)V44.CB) [> -999.000 = 6.500 < 8.500] w=0.055 to two_stage # Constraint # added constraint: bonus constraint((T0492)G32.CA, (T0492)L47.CB) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0492)I33.CB, (T0492)E59.CB) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0492)N54.CB, (T0492)R63.CB) [> -999.000 = 6.500 < 8.500] w=0.057 to two_stage # Constraint # added constraint: bonus constraint((T0492)V13.CB, (T0492)L60.CB) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0492)K14.CB, (T0492)L60.CB) [> -999.000 = 6.500 < 8.500] w=0.055 to two_stage # Constraint # added constraint: bonus constraint((T0492)V16.CB, (T0492)G36.CA) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0492)V16.CB, (T0492)V55.CB) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0492)L18.CB, (T0492)R35.CB) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0492)R35.CB, (T0492)R56.CB) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)K43.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)Y58.CB) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)R63.CB) [> -999.000 = 6.500 < 8.500] w=0.055 to two_stage # Constraint # added constraint: bonus constraint((T0492)R5.CB, (T0492)I41.CB) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((T0492)C9.CB, (T0492)K25.CB) [> -999.000 = 6.500 < 8.500] w=0.055 to two_stage # Constraint # added constraint: bonus constraint((T0492)Q11.CB, (T0492)R42.CB) [> -999.000 = 6.500 < 8.500] w=0.055 to two_stage # Constraint # added constraint: bonus constraint((T0492)L18.CB, (T0492)R42.CB) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((T0492)L24.CB, (T0492)L62.CB) [> -999.000 = 6.500 < 8.500] w=0.055 to two_stage # Constraint # added constraint: bonus constraint((T0492)C37.CB, (T0492)I70.CB) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0492)M29.CB, (T0492)R42.CB) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((T0492)M31.CB, (T0492)I41.CB) [> -999.000 = 6.500 < 8.500] w=0.055 to two_stage # Constraint # added constraint: bonus constraint((T0492)Y40.CB, (T0492)K64.CB) [> -999.000 = 6.500 < 8.500] w=0.055 to two_stage # Constraint # added constraint: bonus constraint((T0492)L47.CB, (T0492)E59.CB) [> -999.000 = 6.500 < 8.500] w=0.056 to two_stage # Constraint # added constraint: bonus constraint((T0492)R5.CB, (T0492)R27.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0492)R5.CB, (T0492)R56.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0492)C9.CB, (T0492)K43.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0492)K14.CB, (T0492)C37.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0492)L18.CB, (T0492)Y58.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0492)H19.CB, (T0492)E38.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0492)G20.CA, (T0492)I51.CB) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((T0492)G32.CA, (T0492)I70.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0492)R35.CB, (T0492)L47.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0492)E38.CB, (T0492)M69.CB) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((T0492)L47.CB, (T0492)R56.CB) [> -999.000 = 6.500 < 8.500] w=0.054 to two_stage # Constraint # added constraint: bonus constraint((T0492)R5.CB, (T0492)K43.CB) [> -999.000 = 6.500 < 8.500] w=0.051 to two_stage # Constraint # added constraint: bonus constraint((T0492)C9.CB, (T0492)A45.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0492)G10.CA, (T0492)R56.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0492)T12.CB, (T0492)I39.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0492)V13.CB, (T0492)E38.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0492)A45.CB, (T0492)R56.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0492)L47.CB, (T0492)I70.CB) [> -999.000 = 6.500 < 8.500] w=0.053 to two_stage # Constraint # added constraint: bonus constraint((T0492)C9.CB, (T0492)N54.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0492)V13.CB, (T0492)I51.CB) [> -999.000 = 6.500 < 8.500] w=0.051 to two_stage # Constraint # added constraint: bonus constraint((T0492)V13.CB, (T0492)K64.CB) [> -999.000 = 6.500 < 8.500] w=0.051 to two_stage # Constraint # added constraint: bonus constraint((T0492)V13.CB, (T0492)A67.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0492)V16.CB, (T0492)T34.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0492)K25.CB, (T0492)V44.CB) [> -999.000 = 6.500 < 8.500] w=0.052 to two_stage # Constraint # added constraint: bonus constraint((T0492)K17.CB, (T0492)G36.CA) [> -999.000 = 6.500 < 8.500] w=0.051 to two_stage # Constraint # added constraint: bonus constraint((T0492)L18.CB, (T0492)A67.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0492)G20.CA, (T0492)I39.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0492)T12.CB, (T0492)L47.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0492)T12.CB, (T0492)I70.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0492)T34.CB, (T0492)A45.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0492)D6.CB, (T0492)I41.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0492)K14.CB, (T0492)M69.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0492)R27.CB, (T0492)I39.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0492)K43.CB, (T0492)E68.CB) [> -999.000 = 6.500 < 8.500] w=0.050 to two_stage # Constraint # added constraint: bonus constraint((T0492)G20.CA, (T0492)G36.CA) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)G20.CA) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)L47.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0492)R5.CB, (T0492)G20.CA) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0492)D6.CB, (T0492)K43.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0492)A7.CB, (T0492)I33.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0492)A7.CB, (T0492)K43.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0492)V13.CB, (T0492)C37.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0492)G32.CA, (T0492)V44.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0492)G32.CA, (T0492)I53.CB) [> -999.000 = 6.500 < 8.500] w=0.049 to two_stage # Constraint # added constraint: bonus constraint((T0492)G10.CA, (T0492)L47.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0492)C9.CB, (T0492)R56.CB) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0492)K14.CB, (T0492)R63.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0492)V16.CB, (T0492)Y58.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0492)K17.CB, (T0492)C37.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0492)I39.CB, (T0492)Y58.CB) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0492)V44.CB, (T0492)G57.CA) [> -999.000 = 6.500 < 8.500] w=0.048 to two_stage # Constraint # added constraint: bonus constraint((T0492)K25.CB, (T0492)E38.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0492)K14.CB, (T0492)I51.CB) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0492)V16.CB, (T0492)A67.CB) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0492)K17.CB, (T0492)R42.CB) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0492)V13.CB, (T0492)M69.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0492)H19.CB, (T0492)G36.CA) [> -999.000 = 6.500 < 8.500] w=0.045 to two_stage # Constraint # added constraint: bonus constraint((T0492)K25.CB, (T0492)L47.CB) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0492)T34.CB, (T0492)R56.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0492)E38.CB, (T0492)I51.CB) [> -999.000 = 6.500 < 8.500] w=0.047 to two_stage # Constraint # added constraint: bonus constraint((T0492)I28.CB, (T0492)C37.CB) [> -999.000 = 6.500 < 8.500] w=0.046 to two_stage # Constraint # added constraint: bonus constraint((T0492)M29.CB, (T0492)N54.CB) [> -999.000 = 6.500 < 8.500] w=0.045 to two_stage # Constraint # added constraint: bonus constraint((T0492)D30.CB, (T0492)V55.CB) [> -999.000 = 6.500 < 8.500] w=0.045 to two_stage # Constraint # added constraint: bonus constraint((T0492)G32.CA, (T0492)K43.CB) [> -999.000 = 6.500 < 8.500] w=0.045 to two_stage # Constraint # added constraint: bonus constraint((T0492)G32.CA, (T0492)A45.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0492)G32.CA, (T0492)N54.CB) [> -999.000 = 6.500 < 8.500] w=0.045 to two_stage # Constraint # added constraint: bonus constraint((T0492)T34.CB, (T0492)K43.CB) [> -999.000 = 6.500 < 8.500] w=0.045 to two_stage # Constraint # added constraint: bonus constraint((T0492)T34.CB, (T0492)A67.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0492)I39.CB, (T0492)K64.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0492)L47.CB, (T0492)K64.CB) [> -999.000 = 6.500 < 8.500] w=0.045 to two_stage # Constraint # added constraint: bonus constraint((T0492)H19.CB, (T0492)Y40.CB) [> -999.000 = 6.500 < 8.500] w=0.043 to two_stage # Constraint # added constraint: bonus constraint((T0492)V44.CB, (T0492)R56.CB) [> -999.000 = 6.500 < 8.500] w=0.044 to two_stage # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)T34.CB) [> -999.000 = 6.500 < 8.500] w=0.042 to two_stage # Constraint # added constraint: bonus constraint((T0492)R5.CB, (T0492)K14.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0492)C9.CB, (T0492)L18.CB) [> -999.000 = 6.500 < 8.500] w=0.042 to two_stage # Constraint # added constraint: bonus constraint((T0492)C9.CB, (T0492)I41.CB) [> -999.000 = 6.500 < 8.500] w=0.042 to two_stage # Constraint # added constraint: bonus constraint((T0492)R5.CB, (T0492)V15.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0492)C9.CB, (T0492)K64.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0492)H19.CB, (T0492)C37.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0492)G20.CA, (T0492)I41.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0492)Q11.CB, (T0492)Y40.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0492)Q11.CB, (T0492)L47.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0492)A7.CB, (T0492)Y40.CB) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((T0492)L18.CB, (T0492)T34.CB) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((T0492)G20.CA, (T0492)Y40.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0492)K25.CB, (T0492)I51.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0492)R42.CB, (T0492)K64.CB) [> -999.000 = 6.500 < 8.500] w=0.042 to two_stage # Constraint # added constraint: bonus constraint((T0492)I28.CB, (T0492)Q52.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0492)M29.CB, (T0492)R56.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0492)T34.CB, (T0492)I70.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0492)V44.CB, (T0492)E68.CB) [> -999.000 = 6.500 < 8.500] w=0.041 to two_stage # Constraint # added constraint: bonus constraint((T0492)M29.CB, (T0492)E38.CB) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((T0492)R42.CB, (T0492)E68.CB) [> -999.000 = 6.500 < 8.500] w=0.040 to two_stage # Constraint # added constraint: bonus constraint((T0492)V16.CB, (T0492)R35.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0492)L18.CB, (T0492)K43.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0492)H19.CB, (T0492)I41.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0492)L24.CB, (T0492)P50.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0492)I41.CB, (T0492)K64.CB) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((T0492)V55.CB, (T0492)A66.CB) [> -999.000 = 6.500 < 8.500] w=0.039 to two_stage # Constraint # added constraint: bonus constraint((T0492)I33.CB, (T0492)D49.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0492)T34.CB, (T0492)I53.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0492)N54.CB, (T0492)E68.CB) [> -999.000 = 6.500 < 8.500] w=0.038 to two_stage # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)R26.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0492)D6.CB, (T0492)L18.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0492)C9.CB, (T0492)H19.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0492)G10.CA, (T0492)H19.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0492)G20.CA, (T0492)E38.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0492)L24.CB, (T0492)I51.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0492)K25.CB, (T0492)G36.CA) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0492)R26.CB, (T0492)I41.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0492)I28.CB, (T0492)V44.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0492)D30.CB, (T0492)I41.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0492)G32.CA, (T0492)R56.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0492)G48.CA, (T0492)K64.CB) [> -999.000 = 6.500 < 8.500] w=0.036 to two_stage # Constraint # added constraint: bonus constraint((T0492)R5.CB, (T0492)K17.CB) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0492)A7.CB, (T0492)V16.CB) [> -999.000 = 6.500 < 8.500] w=0.034 to two_stage # Constraint # added constraint: bonus constraint((T0492)A7.CB, (T0492)K17.CB) [> -999.000 = 6.500 < 8.500] w=0.034 to two_stage # Constraint # added constraint: bonus constraint((T0492)D6.CB, (T0492)H19.CB) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0492)K8.CB, (T0492)L18.CB) [> -999.000 = 6.500 < 8.500] w=0.034 to two_stage # Constraint # added constraint: bonus constraint((T0492)C9.CB, (T0492)M31.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0492)P46.CB, (T0492)E59.CB) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0492)G48.CA, (T0492)G57.CA) [> -999.000 = 6.500 < 8.500] w=0.035 to two_stage # Constraint # added constraint: bonus constraint((T0492)K8.CB, (T0492)H19.CB) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0492)K8.CB, (T0492)R56.CB) [> -999.000 = 6.500 < 8.500] w=0.032 to two_stage # Constraint # added constraint: bonus constraint((T0492)C9.CB, (T0492)T34.CB) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0492)G10.CA, (T0492)G20.CA) [> -999.000 = 6.500 < 8.500] w=0.033 to two_stage # Constraint # added constraint: bonus constraint((T0492)R35.CB, (T0492)K64.CB) [> -999.000 = 6.500 < 8.500] w=0.034 to two_stage # Constraint # added constraint: bonus constraint((T0492)P46.CB, (T0492)R56.CB) [> -999.000 = 6.500 < 8.500] w=0.034 to two_stage # Constraint # added constraint: bonus constraint((T0492)A7.CB, (T0492)R42.CB) [> -999.000 = 6.500 < 8.500] w=0.031 to two_stage # Constraint # added constraint: bonus constraint((T0492)C9.CB, (T0492)R27.CB) [> -999.000 = 6.500 < 8.500] w=0.032 to two_stage # Constraint # added constraint: bonus constraint((T0492)G10.CA, (T0492)R42.CB) [> -999.000 = 6.500 < 8.500] w=0.031 to two_stage # Constraint # added constraint: bonus constraint((T0492)K8.CB, (T0492)K17.CB) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0492)K17.CB, (T0492)K43.CB) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0492)G20.CA, (T0492)C37.CB) [> -999.000 = 6.500 < 8.500] w=0.031 to two_stage # Constraint # added constraint: bonus constraint((T0492)D30.CB, (T0492)K43.CB) [> -999.000 = 6.500 < 8.500] w=0.031 to two_stage # Constraint # added constraint: bonus constraint((T0492)G32.CA, (T0492)R42.CB) [> -999.000 = 6.500 < 8.500] w=0.032 to two_stage # Constraint # added constraint: bonus constraint((T0492)G32.CA, (T0492)K64.CB) [> -999.000 = 6.500 < 8.500] w=0.032 to two_stage # Constraint # added constraint: bonus constraint((T0492)D30.CB, (T0492)V44.CB) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0492)I33.CB, (T0492)K64.CB) [> -999.000 = 6.500 < 8.500] w=0.030 to two_stage # Constraint # added constraint: bonus constraint((T0492)I33.CB, (T0492)A66.CB) [> -999.000 = 6.500 < 8.500] w=0.031 to two_stage # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)M29.CB) [> -999.000 = 6.500 < 8.500] w=0.029 to two_stage # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)D30.CB) [> -999.000 = 6.500 < 8.500] w=0.029 to two_stage # Constraint # added constraint: bonus constraint((T0492)C9.CB, (T0492)G20.CA) [> -999.000 = 6.500 < 8.500] w=0.029 to two_stage # Constraint # added constraint: bonus constraint((T0492)I28.CB, (T0492)K43.CB) [> -999.000 = 6.500 < 8.500] w=0.028 to two_stage # Constraint # added constraint: bonus constraint((T0492)A7.CB, (T0492)G20.CA) [> -999.000 = 6.500 < 8.500] w=0.027 to two_stage # Constraint # added constraint: bonus constraint((T0492)G10.CA, (T0492)Y40.CB) [> -999.000 = 6.500 < 8.500] w=0.027 to two_stage # Constraint # added constraint: bonus constraint((T0492)T34.CB, (T0492)N54.CB) [> -999.000 = 6.500 < 8.500] w=0.027 to two_stage # Constraint # added constraint: bonus constraint((T0492)D6.CB, (T0492)V15.CB) [> -999.000 = 6.500 < 8.500] w=0.025 to two_stage # Constraint # added constraint: bonus constraint((T0492)G32.CA, (T0492)I51.CB) [> -999.000 = 6.500 < 8.500] w=0.025 to two_stage # Constraint # added constraint: bonus constraint((T0492)R35.CB, (T0492)G48.CA) [> -999.000 = 6.500 < 8.500] w=0.025 to two_stage # Constraint # added constraint: bonus constraint((T0492)D6.CB, (T0492)Y40.CB) [> -999.000 = 6.500 < 8.500] w=0.024 to two_stage # Constraint # added constraint: bonus constraint((T0492)C9.CB, (T0492)R26.CB) [> -999.000 = 6.500 < 8.500] w=0.023 to two_stage # Constraint # added constraint: bonus constraint((T0492)C9.CB, (T0492)R42.CB) [> -999.000 = 6.500 < 8.500] w=0.024 to two_stage # Constraint # added constraint: bonus constraint((T0492)R26.CB, (T0492)I39.CB) [> -999.000 = 6.500 < 8.500] w=0.023 to two_stage # Constraint # added constraint: bonus constraint((T0492)I28.CB, (T0492)Y58.CB) [> -999.000 = 6.500 < 8.500] w=0.023 to two_stage # Constraint # added constraint: bonus constraint((T0492)D6.CB, (T0492)K17.CB) [> -999.000 = 6.500 < 8.500] w=0.022 to two_stage # Constraint # added constraint: bonus constraint((T0492)M29.CB, (T0492)G48.CA) [> -999.000 = 6.500 < 8.500] w=0.022 to two_stage # Constraint # added constraint: bonus constraint((T0492)D30.CB, (T0492)I39.CB) [> -999.000 = 6.500 < 8.500] w=0.022 to two_stage # Constraint # added constraint: bonus constraint((T0492)V55.CB, (T0492)E68.CB) [> -999.000 = 6.500 < 8.500] w=0.023 to two_stage # Constraint # added constraint: bonus constraint((T0492)C9.CB, (T0492)T21.CB) [> -999.000 = 6.500 < 8.500] w=0.021 to two_stage # Constraint # added constraint: bonus constraint((T0492)R5.CB, (T0492)R42.CB) [> -999.000 = 6.500 < 8.500] w=0.019 to two_stage # Constraint # added constraint: bonus constraint((T0492)L24.CB, (T0492)I33.CB) [> -999.000 = 6.500 < 8.500] w=0.019 to two_stage # Constraint # added constraint: bonus constraint((T0492)R5.CB, (T0492)V16.CB) [> -999.000 = 6.500 < 8.500] w=0.017 to two_stage # Constraint # added constraint: bonus constraint((T0492)D6.CB, (T0492)V16.CB) [> -999.000 = 6.500 < 8.500] w=0.015 to two_stage # Constraint # added constraint: bonus constraint((T0492)D6.CB, (T0492)R42.CB) [> -999.000 = 6.500 < 8.500] w=0.016 to two_stage # Constraint # added constraint: bonus constraint((T0492)G10.CA, (T0492)T21.CB) [> -999.000 = 6.500 < 8.500] w=0.017 to two_stage # future Constraint commands -> nn1000 # future HelixConstraint commands -> nn1000 # future StrandConstraint commands -> nn1000 # future SheetConstraint commands -> nn1000 # future Hbond commands -> nn1000 # future SSbond commands -> nn1000 Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/T0492nn1000.constraints or /projects/compbio/experiments/protein-predict/casp8/T0492nn1000.constraints.gz for input Trying nn1000.constraints # reading script from file nn1000.constraints # Constraint # added constraint: bonus constraint((T0492)I39.CB, (T0492)I53.CB) [> -999.000 = 6.500 < 8.500] w=0.979 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I41.CB, (T0492)I53.CB) [> -999.000 = 6.500 < 8.500] w=0.971 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I39.CB, (T0492)V55.CB) [> -999.000 = 6.500 < 8.500] w=0.967 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I53.CB, (T0492)L62.CB) [> -999.000 = 6.500 < 8.500] w=0.956 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I39.CB, (T0492)I70.CB) [> -999.000 = 6.500 < 8.500] w=0.949 to nn1000 # Constraint # added constraint: bonus constraint((T0492)R42.CB, (T0492)I53.CB) [> -999.000 = 6.500 < 8.500] w=0.947 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)V15.CB) [> -999.000 = 6.500 < 8.500] w=0.945 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V13.CB, (T0492)I41.CB) [> -999.000 = 6.500 < 8.500] w=0.946 to nn1000 # Constraint # added constraint: bonus constraint((T0492)A45.CB, (T0492)L60.CB) [> -999.000 = 6.500 < 8.500] w=0.941 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I53.CB, (T0492)I70.CB) [> -999.000 = 6.500 < 8.500] w=0.941 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V15.CB, (T0492)I41.CB) [> -999.000 = 6.500 < 8.500] w=0.939 to nn1000 # Constraint # added constraint: bonus constraint((T0492)E38.CB, (T0492)N54.CB) [> -999.000 = 6.500 < 8.500] w=0.938 to nn1000 # Constraint # added constraint: bonus constraint((T0492)Y40.CB, (T0492)N54.CB) [> -999.000 = 6.500 < 8.500] w=0.939 to nn1000 # Constraint # added constraint: bonus constraint((T0492)D49.CB, (T0492)R63.CB) [> -999.000 = 6.500 < 8.500] w=0.939 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V15.CB, (T0492)I28.CB) [> -999.000 = 6.500 < 8.500] w=0.936 to nn1000 # Constraint # added constraint: bonus constraint((T0492)Q52.CB, (T0492)S61.CB) [> -999.000 = 6.500 < 8.500] w=0.935 to nn1000 # Constraint # added constraint: bonus constraint((T0492)P50.CB, (T0492)S61.CB) [> -999.000 = 6.500 < 8.500] w=0.933 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I39.CB, (T0492)N54.CB) [> -999.000 = 6.500 < 8.500] w=0.921 to nn1000 # Constraint # added constraint: bonus constraint((T0492)R42.CB, (T0492)N54.CB) [> -999.000 = 6.500 < 8.500] w=0.921 to nn1000 # Constraint # added constraint: bonus constraint((T0492)R42.CB, (T0492)Q52.CB) [> -999.000 = 6.500 < 8.500] w=0.916 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I51.CB, (T0492)S61.CB) [> -999.000 = 6.500 < 8.500] w=0.916 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V15.CB, (T0492)V55.CB) [> -999.000 = 6.500 < 8.500] w=0.914 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L60.CB, (T0492)I70.CB) [> -999.000 = 6.500 < 8.500] w=0.915 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I39.CB, (T0492)L62.CB) [> -999.000 = 6.500 < 8.500] w=0.912 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V15.CB, (T0492)I39.CB) [> -999.000 = 6.500 < 8.500] w=0.903 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V16.CB, (T0492)Y40.CB) [> -999.000 = 6.500 < 8.500] w=0.904 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I51.CB, (T0492)L62.CB) [> -999.000 = 6.500 < 8.500] w=0.904 to nn1000 # Constraint # added constraint: bonus constraint((T0492)Q52.CB, (T0492)E71.CB) [> -999.000 = 6.500 < 8.500] w=0.903 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I53.CB, (T0492)A67.CB) [> -999.000 = 6.500 < 8.500] w=0.901 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V15.CB, (T0492)I70.CB) [> -999.000 = 6.500 < 8.500] w=0.899 to nn1000 # Constraint # added constraint: bonus constraint((T0492)T12.CB, (T0492)V44.CB) [> -999.000 = 6.500 < 8.500] w=0.897 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I41.CB, (T0492)V55.CB) [> -999.000 = 6.500 < 8.500] w=0.897 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V13.CB, (T0492)R42.CB) [> -999.000 = 6.500 < 8.500] w=0.896 to nn1000 # Constraint # added constraint: bonus constraint((T0492)P50.CB, (T0492)R63.CB) [> -999.000 = 6.500 < 8.500] w=0.895 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I41.CB, (T0492)I70.CB) [> -999.000 = 6.500 < 8.500] w=0.894 to nn1000 # Constraint # added constraint: bonus constraint((T0492)Q52.CB, (T0492)L62.CB) [> -999.000 = 6.500 < 8.500] w=0.895 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I28.CB, (T0492)I53.CB) [> -999.000 = 6.500 < 8.500] w=0.894 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V15.CB, (T0492)I53.CB) [> -999.000 = 6.500 < 8.500] w=0.892 to nn1000 # Constraint # added constraint: bonus constraint((T0492)Y40.CB, (T0492)E71.CB) [> -999.000 = 6.500 < 8.500] w=0.892 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I51.CB, (T0492)L60.CB) [> -999.000 = 6.500 < 8.500] w=0.892 to nn1000 # Constraint # added constraint: bonus constraint((T0492)T12.CB, (T0492)N54.CB) [> -999.000 = 6.500 < 8.500] w=0.890 to nn1000 # Constraint # added constraint: bonus constraint((T0492)K43.CB, (T0492)Q52.CB) [> -999.000 = 6.500 < 8.500] w=0.891 to nn1000 # Constraint # added constraint: bonus constraint((T0492)Y40.CB, (T0492)I53.CB) [> -999.000 = 6.500 < 8.500] w=0.890 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V15.CB, (T0492)Y40.CB) [> -999.000 = 6.500 < 8.500] w=0.888 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V13.CB, (T0492)V55.CB) [> -999.000 = 6.500 < 8.500] w=0.886 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V15.CB, (T0492)I33.CB) [> -999.000 = 6.500 < 8.500] w=0.886 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I28.CB, (T0492)I39.CB) [> -999.000 = 6.500 < 8.500] w=0.887 to nn1000 # Constraint # added constraint: bonus constraint((T0492)R42.CB, (T0492)V55.CB) [> -999.000 = 6.500 < 8.500] w=0.886 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V16.CB, (T0492)I41.CB) [> -999.000 = 6.500 < 8.500] w=0.884 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I41.CB, (T0492)I51.CB) [> -999.000 = 6.500 < 8.500] w=0.884 to nn1000 # Constraint # added constraint: bonus constraint((T0492)R42.CB, (T0492)I70.CB) [> -999.000 = 6.500 < 8.500] w=0.884 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V13.CB, (T0492)V44.CB) [> -999.000 = 6.500 < 8.500] w=0.882 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I28.CB, (T0492)I41.CB) [> -999.000 = 6.500 < 8.500] w=0.882 to nn1000 # Constraint # added constraint: bonus constraint((T0492)M31.CB, (T0492)S61.CB) [> -999.000 = 6.500 < 8.500] w=0.880 to nn1000 # Constraint # added constraint: bonus constraint((T0492)E38.CB, (T0492)V55.CB) [> -999.000 = 6.500 < 8.500] w=0.879 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)L18.CB) [> -999.000 = 6.500 < 8.500] w=0.877 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)I28.CB) [> -999.000 = 6.500 < 8.500] w=0.877 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V13.CB, (T0492)N54.CB) [> -999.000 = 6.500 < 8.500] w=0.875 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I51.CB, (T0492)R63.CB) [> -999.000 = 6.500 < 8.500] w=0.876 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I53.CB, (T0492)E71.CB) [> -999.000 = 6.500 < 8.500] w=0.875 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)V13.CB) [> -999.000 = 6.500 < 8.500] w=0.873 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I39.CB, (T0492)S61.CB) [> -999.000 = 6.500 < 8.500] w=0.873 to nn1000 # Constraint # added constraint: bonus constraint((T0492)Y40.CB, (T0492)Q52.CB) [> -999.000 = 6.500 < 8.500] w=0.873 to nn1000 # Constraint # added constraint: bonus constraint((T0492)K14.CB, (T0492)Y40.CB) [> -999.000 = 6.500 < 8.500] w=0.872 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V15.CB, (T0492)R42.CB) [> -999.000 = 6.500 < 8.500] w=0.872 to nn1000 # Constraint # added constraint: bonus constraint((T0492)C37.CB, (T0492)V55.CB) [> -999.000 = 6.500 < 8.500] w=0.871 to nn1000 # Constraint # added constraint: bonus constraint((T0492)D49.CB, (T0492)S61.CB) [> -999.000 = 6.500 < 8.500] w=0.870 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I51.CB, (T0492)A67.CB) [> -999.000 = 6.500 < 8.500] w=0.871 to nn1000 # Constraint # added constraint: bonus constraint((T0492)T12.CB, (T0492)K43.CB) [> -999.000 = 6.500 < 8.500] w=0.869 to nn1000 # Constraint # added constraint: bonus constraint((T0492)E38.CB, (T0492)E71.CB) [> -999.000 = 6.500 < 8.500] w=0.869 to nn1000 # Constraint # added constraint: bonus constraint((T0492)A45.CB, (T0492)S61.CB) [> -999.000 = 6.500 < 8.500] w=0.868 to nn1000 # Constraint # added constraint: bonus constraint((T0492)R42.CB, (T0492)S61.CB) [> -999.000 = 6.500 < 8.500] w=0.866 to nn1000 # Constraint # added constraint: bonus constraint((T0492)R42.CB, (T0492)E71.CB) [> -999.000 = 6.500 < 8.500] w=0.867 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V13.CB, (T0492)I53.CB) [> -999.000 = 6.500 < 8.500] w=0.865 to nn1000 # Constraint # added constraint: bonus constraint((T0492)C37.CB, (T0492)R56.CB) [> -999.000 = 6.500 < 8.500] w=0.861 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I39.CB, (T0492)A67.CB) [> -999.000 = 6.500 < 8.500] w=0.862 to nn1000 # Constraint # added constraint: bonus constraint((T0492)R42.CB, (T0492)I51.CB) [> -999.000 = 6.500 < 8.500] w=0.861 to nn1000 # Constraint # added constraint: bonus constraint((T0492)P50.CB, (T0492)L62.CB) [> -999.000 = 6.500 < 8.500] w=0.862 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I41.CB, (T0492)N54.CB) [> -999.000 = 6.500 < 8.500] w=0.861 to nn1000 # Constraint # added constraint: bonus constraint((T0492)T34.CB, (T0492)V44.CB) [> -999.000 = 6.500 < 8.500] w=0.859 to nn1000 # Constraint # added constraint: bonus constraint((T0492)S61.CB, (T0492)I70.CB) [> -999.000 = 6.500 < 8.500] w=0.860 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I41.CB, (T0492)Q52.CB) [> -999.000 = 6.500 < 8.500] w=0.858 to nn1000 # Constraint # added constraint: bonus constraint((T0492)R42.CB, (T0492)M69.CB) [> -999.000 = 6.500 < 8.500] w=0.858 to nn1000 # Constraint # added constraint: bonus constraint((T0492)G36.CA, (T0492)A45.CB) [> -999.000 = 6.500 < 8.500] w=0.857 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I41.CB, (T0492)L62.CB) [> -999.000 = 6.500 < 8.500] w=0.857 to nn1000 # Constraint # added constraint: bonus constraint((T0492)T12.CB, (T0492)Y40.CB) [> -999.000 = 6.500 < 8.500] w=0.856 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L18.CB, (T0492)I28.CB) [> -999.000 = 6.500 < 8.500] w=0.855 to nn1000 # Constraint # added constraint: bonus constraint((T0492)M31.CB, (T0492)L60.CB) [> -999.000 = 6.500 < 8.500] w=0.853 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I33.CB, (T0492)L60.CB) [> -999.000 = 6.500 < 8.500] w=0.853 to nn1000 # Constraint # added constraint: bonus constraint((T0492)Y58.CB, (T0492)E71.CB) [> -999.000 = 6.500 < 8.500] w=0.854 to nn1000 # Constraint # added constraint: bonus constraint((T0492)T34.CB, (T0492)A45.CB) [> -999.000 = 6.500 < 8.500] w=0.851 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I39.CB, (T0492)L60.CB) [> -999.000 = 6.500 < 8.500] w=0.851 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V55.CB, (T0492)I70.CB) [> -999.000 = 6.500 < 8.500] w=0.851 to nn1000 # Constraint # added constraint: bonus constraint((T0492)S61.CB, (T0492)E71.CB) [> -999.000 = 6.500 < 8.500] w=0.850 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V13.CB, (T0492)A45.CB) [> -999.000 = 6.500 < 8.500] w=0.847 to nn1000 # Constraint # added constraint: bonus constraint((T0492)T12.CB, (T0492)A45.CB) [> -999.000 = 6.500 < 8.500] w=0.846 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I28.CB, (T0492)L62.CB) [> -999.000 = 6.500 < 8.500] w=0.847 to nn1000 # Constraint # added constraint: bonus constraint((T0492)P50.CB, (T0492)E71.CB) [> -999.000 = 6.500 < 8.500] w=0.847 to nn1000 # Constraint # added constraint: bonus constraint((T0492)Y40.CB, (T0492)V55.CB) [> -999.000 = 6.500 < 8.500] w=0.846 to nn1000 # Constraint # added constraint: bonus constraint((T0492)A45.CB, (T0492)Y58.CB) [> -999.000 = 6.500 < 8.500] w=0.846 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V13.CB, (T0492)K43.CB) [> -999.000 = 6.500 < 8.500] w=0.844 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V15.CB, (T0492)M31.CB) [> -999.000 = 6.500 < 8.500] w=0.844 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V13.CB, (T0492)I39.CB) [> -999.000 = 6.500 < 8.500] w=0.843 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L18.CB, (T0492)L60.CB) [> -999.000 = 6.500 < 8.500] w=0.843 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I51.CB, (T0492)A66.CB) [> -999.000 = 6.500 < 8.500] w=0.844 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V16.CB, (T0492)R42.CB) [> -999.000 = 6.500 < 8.500] w=0.842 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I53.CB, (T0492)M69.CB) [> -999.000 = 6.500 < 8.500] w=0.843 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V44.CB, (T0492)I53.CB) [> -999.000 = 6.500 < 8.500] w=0.841 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I51.CB, (T0492)I70.CB) [> -999.000 = 6.500 < 8.500] w=0.841 to nn1000 # Constraint # added constraint: bonus constraint((T0492)Q52.CB, (T0492)R63.CB) [> -999.000 = 6.500 < 8.500] w=0.840 to nn1000 # Constraint # added constraint: bonus constraint((T0492)Q52.CB, (T0492)M69.CB) [> -999.000 = 6.500 < 8.500] w=0.841 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I33.CB, (T0492)I53.CB) [> -999.000 = 6.500 < 8.500] w=0.839 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)I41.CB) [> -999.000 = 6.500 < 8.500] w=0.838 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I41.CB, (T0492)E71.CB) [> -999.000 = 6.500 < 8.500] w=0.838 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)L62.CB) [> -999.000 = 6.500 < 8.500] w=0.836 to nn1000 # Constraint # added constraint: bonus constraint((T0492)K14.CB, (T0492)E38.CB) [> -999.000 = 6.500 < 8.500] w=0.837 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I51.CB, (T0492)E71.CB) [> -999.000 = 6.500 < 8.500] w=0.835 to nn1000 # Constraint # added constraint: bonus constraint((T0492)K14.CB, (T0492)I41.CB) [> -999.000 = 6.500 < 8.500] w=0.832 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)M31.CB) [> -999.000 = 6.500 < 8.500] w=0.830 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I33.CB, (T0492)L62.CB) [> -999.000 = 6.500 < 8.500] w=0.831 to nn1000 # Constraint # added constraint: bonus constraint((T0492)K43.CB, (T0492)I53.CB) [> -999.000 = 6.500 < 8.500] w=0.829 to nn1000 # Constraint # added constraint: bonus constraint((T0492)E59.CB, (T0492)E71.CB) [> -999.000 = 6.500 < 8.500] w=0.830 to nn1000 # Constraint # added constraint: bonus constraint((T0492)T12.CB, (T0492)R42.CB) [> -999.000 = 6.500 < 8.500] w=0.828 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L18.CB, (T0492)I39.CB) [> -999.000 = 6.500 < 8.500] w=0.827 to nn1000 # Constraint # added constraint: bonus constraint((T0492)R35.CB, (T0492)V44.CB) [> -999.000 = 6.500 < 8.500] w=0.828 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I28.CB, (T0492)I70.CB) [> -999.000 = 6.500 < 8.500] w=0.826 to nn1000 # Constraint # added constraint: bonus constraint((T0492)Y40.CB, (T0492)I70.CB) [> -999.000 = 6.500 < 8.500] w=0.826 to nn1000 # Constraint # added constraint: bonus constraint((T0492)P50.CB, (T0492)A67.CB) [> -999.000 = 6.500 < 8.500] w=0.827 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)A67.CB) [> -999.000 = 6.500 < 8.500] w=0.825 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V15.CB, (T0492)L62.CB) [> -999.000 = 6.500 < 8.500] w=0.825 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I28.CB, (T0492)V55.CB) [> -999.000 = 6.500 < 8.500] w=0.825 to nn1000 # Constraint # added constraint: bonus constraint((T0492)Y40.CB, (T0492)M69.CB) [> -999.000 = 6.500 < 8.500] w=0.825 to nn1000 # Constraint # added constraint: bonus constraint((T0492)K43.CB, (T0492)R56.CB) [> -999.000 = 6.500 < 8.500] w=0.824 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)I39.CB) [> -999.000 = 6.500 < 8.500] w=0.823 to nn1000 # Constraint # added constraint: bonus constraint((T0492)M31.CB, (T0492)I53.CB) [> -999.000 = 6.500 < 8.500] w=0.822 to nn1000 # Constraint # added constraint: bonus constraint((T0492)K43.CB, (T0492)N54.CB) [> -999.000 = 6.500 < 8.500] w=0.823 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L60.CB, (T0492)E71.CB) [> -999.000 = 6.500 < 8.500] w=0.823 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)L24.CB) [> -999.000 = 6.500 < 8.500] w=0.821 to nn1000 # Constraint # added constraint: bonus constraint((T0492)T12.CB, (T0492)V55.CB) [> -999.000 = 6.500 < 8.500] w=0.819 to nn1000 # Constraint # added constraint: bonus constraint((T0492)K17.CB, (T0492)Y40.CB) [> -999.000 = 6.500 < 8.500] w=0.818 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L18.CB, (T0492)M31.CB) [> -999.000 = 6.500 < 8.500] w=0.819 to nn1000 # Constraint # added constraint: bonus constraint((T0492)R42.CB, (T0492)L62.CB) [> -999.000 = 6.500 < 8.500] w=0.820 to nn1000 # Constraint # added constraint: bonus constraint((T0492)N54.CB, (T0492)E71.CB) [> -999.000 = 6.500 < 8.500] w=0.820 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L18.CB, (T0492)R27.CB) [> -999.000 = 6.500 < 8.500] w=0.818 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L18.CB, (T0492)I41.CB) [> -999.000 = 6.500 < 8.500] w=0.819 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I28.CB, (T0492)L60.CB) [> -999.000 = 6.500 < 8.500] w=0.818 to nn1000 # Constraint # added constraint: bonus constraint((T0492)T34.CB, (T0492)P46.CB) [> -999.000 = 6.500 < 8.500] w=0.818 to nn1000 # Constraint # added constraint: bonus constraint((T0492)Q52.CB, (T0492)I70.CB) [> -999.000 = 6.500 < 8.500] w=0.818 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V16.CB, (T0492)I39.CB) [> -999.000 = 6.500 < 8.500] w=0.815 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L18.CB, (T0492)I53.CB) [> -999.000 = 6.500 < 8.500] w=0.814 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I28.CB, (T0492)A67.CB) [> -999.000 = 6.500 < 8.500] w=0.814 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I39.CB, (T0492)I51.CB) [> -999.000 = 6.500 < 8.500] w=0.815 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V44.CB, (T0492)N54.CB) [> -999.000 = 6.500 < 8.500] w=0.814 to nn1000 # Constraint # added constraint: bonus constraint((T0492)P50.CB, (T0492)I70.CB) [> -999.000 = 6.500 < 8.500] w=0.814 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)K14.CB) [> -999.000 = 6.500 < 8.500] w=0.812 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V13.CB, (T0492)I33.CB) [> -999.000 = 6.500 < 8.500] w=0.811 to nn1000 # Constraint # added constraint: bonus constraint((T0492)Y40.CB, (T0492)I51.CB) [> -999.000 = 6.500 < 8.500] w=0.810 to nn1000 # Constraint # added constraint: bonus constraint((T0492)Y40.CB, (T0492)R56.CB) [> -999.000 = 6.500 < 8.500] w=0.808 to nn1000 # Constraint # added constraint: bonus constraint((T0492)A7.CB, (T0492)L18.CB) [> -999.000 = 6.500 < 8.500] w=0.805 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V13.CB, (T0492)I70.CB) [> -999.000 = 6.500 < 8.500] w=0.805 to nn1000 # Constraint # added constraint: bonus constraint((T0492)M29.CB, (T0492)A45.CB) [> -999.000 = 6.500 < 8.500] w=0.806 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I33.CB, (T0492)V44.CB) [> -999.000 = 6.500 < 8.500] w=0.806 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I51.CB, (T0492)K64.CB) [> -999.000 = 6.500 < 8.500] w=0.806 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I33.CB, (T0492)V55.CB) [> -999.000 = 6.500 < 8.500] w=0.805 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)V55.CB) [> -999.000 = 6.500 < 8.500] w=0.803 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I41.CB, (T0492)L60.CB) [> -999.000 = 6.500 < 8.500] w=0.803 to nn1000 # Constraint # added constraint: bonus constraint((T0492)P50.CB, (T0492)K64.CB) [> -999.000 = 6.500 < 8.500] w=0.803 to nn1000 # Constraint # added constraint: bonus constraint((T0492)E59.CB, (T0492)M69.CB) [> -999.000 = 6.500 < 8.500] w=0.803 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)R27.CB) [> -999.000 = 6.500 < 8.500] w=0.802 to nn1000 # Constraint # added constraint: bonus constraint((T0492)K14.CB, (T0492)N54.CB) [> -999.000 = 6.500 < 8.500] w=0.802 to nn1000 # Constraint # added constraint: bonus constraint((T0492)R42.CB, (T0492)Y58.CB) [> -999.000 = 6.500 < 8.500] w=0.802 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)V16.CB) [> -999.000 = 6.500 < 8.500] w=0.800 to nn1000 # Constraint # added constraint: bonus constraint((T0492)K14.CB, (T0492)V44.CB) [> -999.000 = 6.500 < 8.500] w=0.801 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I33.CB, (T0492)A67.CB) [> -999.000 = 6.500 < 8.500] w=0.800 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L62.CB, (T0492)E71.CB) [> -999.000 = 6.500 < 8.500] w=0.798 to nn1000 # Constraint # added constraint: bonus constraint((T0492)G36.CA, (T0492)N54.CB) [> -999.000 = 6.500 < 8.500] w=0.797 to nn1000 # Constraint # added constraint: bonus constraint((T0492)E38.CB, (T0492)S61.CB) [> -999.000 = 6.500 < 8.500] w=0.797 to nn1000 # Constraint # added constraint: bonus constraint((T0492)R42.CB, (T0492)L60.CB) [> -999.000 = 6.500 < 8.500] w=0.796 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)I53.CB) [> -999.000 = 6.500 < 8.500] w=0.792 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)L60.CB) [> -999.000 = 6.500 < 8.500] w=0.792 to nn1000 # Constraint # added constraint: bonus constraint((T0492)K14.CB, (T0492)R42.CB) [> -999.000 = 6.500 < 8.500] w=0.793 to nn1000 # Constraint # added constraint: bonus constraint((T0492)R35.CB, (T0492)A45.CB) [> -999.000 = 6.500 < 8.500] w=0.792 to nn1000 # Constraint # added constraint: bonus constraint((T0492)Y40.CB, (T0492)S61.CB) [> -999.000 = 6.500 < 8.500] w=0.793 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I51.CB, (T0492)M69.CB) [> -999.000 = 6.500 < 8.500] w=0.793 to nn1000 # Constraint # added constraint: bonus constraint((T0492)P50.CB, (T0492)A66.CB) [> -999.000 = 6.500 < 8.500] w=0.792 to nn1000 # Constraint # added constraint: bonus constraint((T0492)M31.CB, (T0492)I41.CB) [> -999.000 = 6.500 < 8.500] w=0.791 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L60.CB, (T0492)M69.CB) [> -999.000 = 6.500 < 8.500] w=0.792 to nn1000 # Constraint # added constraint: bonus constraint((T0492)A45.CB, (T0492)N54.CB) [> -999.000 = 6.500 < 8.500] w=0.791 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V15.CB, (T0492)L24.CB) [> -999.000 = 6.500 < 8.500] w=0.789 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V15.CB, (T0492)L60.CB) [> -999.000 = 6.500 < 8.500] w=0.789 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I33.CB, (T0492)I70.CB) [> -999.000 = 6.500 < 8.500] w=0.789 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I41.CB, (T0492)S61.CB) [> -999.000 = 6.500 < 8.500] w=0.789 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V15.CB, (T0492)I51.CB) [> -999.000 = 6.500 < 8.500] w=0.787 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I39.CB, (T0492)Q52.CB) [> -999.000 = 6.500 < 8.500] w=0.786 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L18.CB, (T0492)Y40.CB) [> -999.000 = 6.500 < 8.500] w=0.785 to nn1000 # Constraint # added constraint: bonus constraint((T0492)M31.CB, (T0492)A45.CB) [> -999.000 = 6.500 < 8.500] w=0.785 to nn1000 # Constraint # added constraint: bonus constraint((T0492)T12.CB, (T0492)E71.CB) [> -999.000 = 6.500 < 8.500] w=0.784 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I53.CB, (T0492)R63.CB) [> -999.000 = 6.500 < 8.500] w=0.784 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I39.CB, (T0492)E71.CB) [> -999.000 = 6.500 < 8.500] w=0.781 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I41.CB, (T0492)A67.CB) [> -999.000 = 6.500 < 8.500] w=0.782 to nn1000 # Constraint # added constraint: bonus constraint((T0492)N54.CB, (T0492)I70.CB) [> -999.000 = 6.500 < 8.500] w=0.782 to nn1000 # Constraint # added constraint: bonus constraint((T0492)T12.CB, (T0492)I33.CB) [> -999.000 = 6.500 < 8.500] w=0.781 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I41.CB, (T0492)E59.CB) [> -999.000 = 6.500 < 8.500] w=0.781 to nn1000 # Constraint # added constraint: bonus constraint((T0492)T12.CB, (T0492)I41.CB) [> -999.000 = 6.500 < 8.500] w=0.779 to nn1000 # Constraint # added constraint: bonus constraint((T0492)K14.CB, (T0492)E71.CB) [> -999.000 = 6.500 < 8.500] w=0.780 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V16.CB, (T0492)E38.CB) [> -999.000 = 6.500 < 8.500] w=0.780 to nn1000 # Constraint # added constraint: bonus constraint((T0492)M29.CB, (T0492)V44.CB) [> -999.000 = 6.500 < 8.500] w=0.780 to nn1000 # Constraint # added constraint: bonus constraint((T0492)C37.CB, (T0492)I53.CB) [> -999.000 = 6.500 < 8.500] w=0.778 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I41.CB, (T0492)P50.CB) [> -999.000 = 6.500 < 8.500] w=0.778 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)I70.CB) [> -999.000 = 6.500 < 8.500] w=0.777 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V13.CB, (T0492)L62.CB) [> -999.000 = 6.500 < 8.500] w=0.776 to nn1000 # Constraint # added constraint: bonus constraint((T0492)M29.CB, (T0492)L60.CB) [> -999.000 = 6.500 < 8.500] w=0.776 to nn1000 # Constraint # added constraint: bonus constraint((T0492)K43.CB, (T0492)Y58.CB) [> -999.000 = 6.500 < 8.500] w=0.776 to nn1000 # Constraint # added constraint: bonus constraint((T0492)Y58.CB, (T0492)A67.CB) [> -999.000 = 6.500 < 8.500] w=0.776 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V13.CB, (T0492)M31.CB) [> -999.000 = 6.500 < 8.500] w=0.775 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I33.CB, (T0492)R42.CB) [> -999.000 = 6.500 < 8.500] w=0.775 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V44.CB, (T0492)R56.CB) [> -999.000 = 6.500 < 8.500] w=0.774 to nn1000 # Constraint # added constraint: bonus constraint((T0492)D49.CB, (T0492)E71.CB) [> -999.000 = 6.500 < 8.500] w=0.775 to nn1000 # Constraint # added constraint: bonus constraint((T0492)Q52.CB, (T0492)A66.CB) [> -999.000 = 6.500 < 8.500] w=0.775 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I33.CB, (T0492)A45.CB) [> -999.000 = 6.500 < 8.500] w=0.773 to nn1000 # Constraint # added constraint: bonus constraint((T0492)T12.CB, (T0492)R56.CB) [> -999.000 = 6.500 < 8.500] w=0.771 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L18.CB, (T0492)V55.CB) [> -999.000 = 6.500 < 8.500] w=0.772 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V16.CB, (T0492)E71.CB) [> -999.000 = 6.500 < 8.500] w=0.771 to nn1000 # Constraint # added constraint: bonus constraint((T0492)K43.CB, (T0492)S61.CB) [> -999.000 = 6.500 < 8.500] w=0.771 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V44.CB, (T0492)Y58.CB) [> -999.000 = 6.500 < 8.500] w=0.772 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L47.CB, (T0492)S61.CB) [> -999.000 = 6.500 < 8.500] w=0.771 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I33.CB, (T0492)I51.CB) [> -999.000 = 6.500 < 8.500] w=0.770 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L47.CB, (T0492)R56.CB) [> -999.000 = 6.500 < 8.500] w=0.770 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V55.CB, (T0492)A67.CB) [> -999.000 = 6.500 < 8.500] w=0.770 to nn1000 # Constraint # added constraint: bonus constraint((T0492)A45.CB, (T0492)E59.CB) [> -999.000 = 6.500 < 8.500] w=0.769 to nn1000 # Constraint # added constraint: bonus constraint((T0492)Y58.CB, (T0492)M69.CB) [> -999.000 = 6.500 < 8.500] w=0.768 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)G32.CA) [> -999.000 = 6.500 < 8.500] w=0.767 to nn1000 # Constraint # added constraint: bonus constraint((T0492)S3.CB, (T0492)K17.CB) [> -999.000 = 6.500 < 8.500] w=0.766 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V13.CB, (T0492)E71.CB) [> -999.000 = 6.500 < 8.500] w=0.766 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I33.CB, (T0492)P50.CB) [> -999.000 = 6.500 < 8.500] w=0.766 to nn1000 # Constraint # added constraint: bonus constraint((T0492)K14.CB, (T0492)K43.CB) [> -999.000 = 6.500 < 8.500] w=0.765 to nn1000 # Constraint # added constraint: bonus constraint((T0492)R5.CB, (T0492)K14.CB) [> -999.000 = 6.500 < 8.500] w=0.763 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L18.CB, (T0492)D49.CB) [> -999.000 = 6.500 < 8.500] w=0.762 to nn1000 # Constraint # added constraint: bonus constraint((T0492)T34.CB, (T0492)R56.CB) [> -999.000 = 6.500 < 8.500] w=0.762 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V44.CB, (T0492)E59.CB) [> -999.000 = 6.500 < 8.500] w=0.763 to nn1000 # Constraint # added constraint: bonus constraint((T0492)N54.CB, (T0492)M69.CB) [> -999.000 = 6.500 < 8.500] w=0.763 to nn1000 # Constraint # added constraint: bonus constraint((T0492)T34.CB, (T0492)D49.CB) [> -999.000 = 6.500 < 8.500] w=0.761 to nn1000 # Constraint # added constraint: bonus constraint((T0492)Y58.CB, (T0492)I70.CB) [> -999.000 = 6.500 < 8.500] w=0.761 to nn1000 # Constraint # added constraint: bonus constraint((T0492)S3.CB, (T0492)K14.CB) [> -999.000 = 6.500 < 8.500] w=0.760 to nn1000 # Constraint # added constraint: bonus constraint((T0492)R42.CB, (T0492)E59.CB) [> -999.000 = 6.500 < 8.500] w=0.759 to nn1000 # Constraint # added constraint: bonus constraint((T0492)K43.CB, (T0492)E59.CB) [> -999.000 = 6.500 < 8.500] w=0.758 to nn1000 # Constraint # added constraint: bonus constraint((T0492)K43.CB, (T0492)M69.CB) [> -999.000 = 6.500 < 8.500] w=0.758 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V15.CB, (T0492)A67.CB) [> -999.000 = 6.500 < 8.500] w=0.756 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I33.CB, (T0492)K43.CB) [> -999.000 = 6.500 < 8.500] w=0.757 to nn1000 # Constraint # added constraint: bonus constraint((T0492)M29.CB, (T0492)I53.CB) [> -999.000 = 6.500 < 8.500] w=0.755 to nn1000 # Constraint # added constraint: bonus constraint((T0492)A45.CB, (T0492)V55.CB) [> -999.000 = 6.500 < 8.500] w=0.755 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L18.CB, (T0492)I51.CB) [> -999.000 = 6.500 < 8.500] w=0.754 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I33.CB, (T0492)Y58.CB) [> -999.000 = 6.500 < 8.500] w=0.753 to nn1000 # Constraint # added constraint: bonus constraint((T0492)Y40.CB, (T0492)Y58.CB) [> -999.000 = 6.500 < 8.500] w=0.753 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V16.CB, (T0492)I53.CB) [> -999.000 = 6.500 < 8.500] w=0.752 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)S61.CB) [> -999.000 = 6.500 < 8.500] w=0.750 to nn1000 # Constraint # added constraint: bonus constraint((T0492)Q11.CB, (T0492)V44.CB) [> -999.000 = 6.500 < 8.500] w=0.750 to nn1000 # Constraint # added constraint: bonus constraint((T0492)R35.CB, (T0492)R56.CB) [> -999.000 = 6.500 < 8.500] w=0.749 to nn1000 # Constraint # added constraint: bonus constraint((T0492)A45.CB, (T0492)R63.CB) [> -999.000 = 6.500 < 8.500] w=0.750 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)P50.CB) [> -999.000 = 6.500 < 8.500] w=0.748 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I41.CB, (T0492)M69.CB) [> -999.000 = 6.500 < 8.500] w=0.748 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I33.CB, (T0492)S61.CB) [> -999.000 = 6.500 < 8.500] w=0.746 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V44.CB, (T0492)L60.CB) [> -999.000 = 6.500 < 8.500] w=0.746 to nn1000 # Constraint # added constraint: bonus constraint((T0492)R5.CB, (T0492)L18.CB) [> -999.000 = 6.500 < 8.500] w=0.745 to nn1000 # Constraint # added constraint: bonus constraint((T0492)M31.CB, (T0492)V55.CB) [> -999.000 = 6.500 < 8.500] w=0.744 to nn1000 # Constraint # added constraint: bonus constraint((T0492)Q11.CB, (T0492)A45.CB) [> -999.000 = 6.500 < 8.500] w=0.742 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V16.CB, (T0492)V44.CB) [> -999.000 = 6.500 < 8.500] w=0.741 to nn1000 # Constraint # added constraint: bonus constraint((T0492)T34.CB, (T0492)K43.CB) [> -999.000 = 6.500 < 8.500] w=0.742 to nn1000 # Constraint # added constraint: bonus constraint((T0492)M29.CB, (T0492)I39.CB) [> -999.000 = 6.500 < 8.500] w=0.741 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)I33.CB) [> -999.000 = 6.500 < 8.500] w=0.740 to nn1000 # Constraint # added constraint: bonus constraint((T0492)K14.CB, (T0492)A45.CB) [> -999.000 = 6.500 < 8.500] w=0.739 to nn1000 # Constraint # added constraint: bonus constraint((T0492)M31.CB, (T0492)L62.CB) [> -999.000 = 6.500 < 8.500] w=0.739 to nn1000 # Constraint # added constraint: bonus constraint((T0492)T34.CB, (T0492)L47.CB) [> -999.000 = 6.500 < 8.500] w=0.740 to nn1000 # Constraint # added constraint: bonus constraint((T0492)G32.CA, (T0492)A67.CB) [> -999.000 = 6.500 < 8.500] w=0.739 to nn1000 # Constraint # added constraint: bonus constraint((T0492)G36.CA, (T0492)R56.CB) [> -999.000 = 6.500 < 8.500] w=0.739 to nn1000 # Constraint # added constraint: bonus constraint((T0492)R42.CB, (T0492)A67.CB) [> -999.000 = 6.500 < 8.500] w=0.738 to nn1000 # Constraint # added constraint: bonus constraint((T0492)K43.CB, (T0492)E71.CB) [> -999.000 = 6.500 < 8.500] w=0.739 to nn1000 # Constraint # added constraint: bonus constraint((T0492)P50.CB, (T0492)M69.CB) [> -999.000 = 6.500 < 8.500] w=0.739 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V15.CB, (T0492)E71.CB) [> -999.000 = 6.500 < 8.500] w=0.737 to nn1000 # Constraint # added constraint: bonus constraint((T0492)C9.CB, (T0492)H19.CB) [> -999.000 = 6.500 < 8.500] w=0.735 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L18.CB, (T0492)L62.CB) [> -999.000 = 6.500 < 8.500] w=0.736 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V13.CB, (T0492)I28.CB) [> -999.000 = 6.500 < 8.500] w=0.734 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V13.CB, (T0492)A67.CB) [> -999.000 = 6.500 < 8.500] w=0.733 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V15.CB, (T0492)R27.CB) [> -999.000 = 6.500 < 8.500] w=0.734 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V15.CB, (T0492)M29.CB) [> -999.000 = 6.500 < 8.500] w=0.735 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V16.CB, (T0492)Q52.CB) [> -999.000 = 6.500 < 8.500] w=0.735 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V15.CB, (T0492)C37.CB) [> -999.000 = 6.500 < 8.500] w=0.733 to nn1000 # Constraint # added constraint: bonus constraint((T0492)R42.CB, (T0492)R56.CB) [> -999.000 = 6.500 < 8.500] w=0.733 to nn1000 # Constraint # added constraint: bonus constraint((T0492)D49.CB, (T0492)K64.CB) [> -999.000 = 6.500 < 8.500] w=0.733 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V15.CB, (T0492)E38.CB) [> -999.000 = 6.500 < 8.500] w=0.731 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I39.CB, (T0492)M69.CB) [> -999.000 = 6.500 < 8.500] w=0.732 to nn1000 # Constraint # added constraint: bonus constraint((T0492)P50.CB, (T0492)L60.CB) [> -999.000 = 6.500 < 8.500] w=0.731 to nn1000 # Constraint # added constraint: bonus constraint((T0492)Q52.CB, (T0492)A67.CB) [> -999.000 = 6.500 < 8.500] w=0.731 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V15.CB, (T0492)N54.CB) [> -999.000 = 6.500 < 8.500] w=0.730 to nn1000 # Constraint # added constraint: bonus constraint((T0492)M31.CB, (T0492)A67.CB) [> -999.000 = 6.500 < 8.500] w=0.730 to nn1000 # Constraint # added constraint: bonus constraint((T0492)G36.CA, (T0492)V55.CB) [> -999.000 = 6.500 < 8.500] w=0.730 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V44.CB, (T0492)S61.CB) [> -999.000 = 6.500 < 8.500] w=0.729 to nn1000 # Constraint # added constraint: bonus constraint((T0492)S3.CB, (T0492)V15.CB) [> -999.000 = 6.500 < 8.500] w=0.728 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)R42.CB) [> -999.000 = 6.500 < 8.500] w=0.726 to nn1000 # Constraint # added constraint: bonus constraint((T0492)M29.CB, (T0492)I41.CB) [> -999.000 = 6.500 < 8.500] w=0.727 to nn1000 # Constraint # added constraint: bonus constraint((T0492)M29.CB, (T0492)A67.CB) [> -999.000 = 6.500 < 8.500] w=0.728 to nn1000 # Constraint # added constraint: bonus constraint((T0492)A45.CB, (T0492)R56.CB) [> -999.000 = 6.500 < 8.500] w=0.728 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)K17.CB) [> -999.000 = 6.500 < 8.500] w=0.725 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)I51.CB) [> -999.000 = 6.500 < 8.500] w=0.726 to nn1000 # Constraint # added constraint: bonus constraint((T0492)A7.CB, (T0492)V16.CB) [> -999.000 = 6.500 < 8.500] w=0.726 to nn1000 # Constraint # added constraint: bonus constraint((T0492)K14.CB, (T0492)C37.CB) [> -999.000 = 6.500 < 8.500] w=0.725 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V16.CB, (T0492)M31.CB) [> -999.000 = 6.500 < 8.500] w=0.726 to nn1000 # Constraint # added constraint: bonus constraint((T0492)E38.CB, (T0492)M69.CB) [> -999.000 = 6.500 < 8.500] w=0.727 to nn1000 # Constraint # added constraint: bonus constraint((T0492)K25.CB, (T0492)A45.CB) [> -999.000 = 6.500 < 8.500] w=0.725 to nn1000 # Constraint # added constraint: bonus constraint((T0492)M29.CB, (T0492)L47.CB) [> -999.000 = 6.500 < 8.500] w=0.725 to nn1000 # Constraint # added constraint: bonus constraint((T0492)G32.CA, (T0492)L62.CB) [> -999.000 = 6.500 < 8.500] w=0.725 to nn1000 # Constraint # added constraint: bonus constraint((T0492)Q11.CB, (T0492)K43.CB) [> -999.000 = 6.500 < 8.500] w=0.723 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V16.CB, (T0492)I28.CB) [> -999.000 = 6.500 < 8.500] w=0.723 to nn1000 # Constraint # added constraint: bonus constraint((T0492)S3.CB, (T0492)K43.CB) [> -999.000 = 6.500 < 8.500] w=0.721 to nn1000 # Constraint # added constraint: bonus constraint((T0492)S3.CB, (T0492)V44.CB) [> -999.000 = 6.500 < 8.500] w=0.721 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V16.CB, (T0492)N54.CB) [> -999.000 = 6.500 < 8.500] w=0.722 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V16.CB, (T0492)I70.CB) [> -999.000 = 6.500 < 8.500] w=0.722 to nn1000 # Constraint # added constraint: bonus constraint((T0492)Q52.CB, (T0492)E68.CB) [> -999.000 = 6.500 < 8.500] w=0.721 to nn1000 # Constraint # added constraint: bonus constraint((T0492)A7.CB, (T0492)M31.CB) [> -999.000 = 6.500 < 8.500] w=0.719 to nn1000 # Constraint # added constraint: bonus constraint((T0492)K14.CB, (T0492)I39.CB) [> -999.000 = 6.500 < 8.500] w=0.718 to nn1000 # Constraint # added constraint: bonus constraint((T0492)G20.CA, (T0492)Y58.CB) [> -999.000 = 6.500 < 8.500] w=0.719 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I28.CB, (T0492)I51.CB) [> -999.000 = 6.500 < 8.500] w=0.718 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L47.CB, (T0492)Y58.CB) [> -999.000 = 6.500 < 8.500] w=0.717 to nn1000 # Constraint # added constraint: bonus constraint((T0492)Q52.CB, (T0492)K64.CB) [> -999.000 = 6.500 < 8.500] w=0.717 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V13.CB, (T0492)L60.CB) [> -999.000 = 6.500 < 8.500] w=0.715 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V15.CB, (T0492)V44.CB) [> -999.000 = 6.500 < 8.500] w=0.714 to nn1000 # Constraint # added constraint: bonus constraint((T0492)G20.CA, (T0492)Q52.CB) [> -999.000 = 6.500 < 8.500] w=0.715 to nn1000 # Constraint # added constraint: bonus constraint((T0492)G32.CA, (T0492)I41.CB) [> -999.000 = 6.500 < 8.500] w=0.716 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V44.CB, (T0492)E71.CB) [> -999.000 = 6.500 < 8.500] w=0.715 to nn1000 # Constraint # added constraint: bonus constraint((T0492)A45.CB, (T0492)M69.CB) [> -999.000 = 6.500 < 8.500] w=0.716 to nn1000 # Constraint # added constraint: bonus constraint((T0492)Y40.CB, (T0492)E59.CB) [> -999.000 = 6.500 < 8.500] w=0.715 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I41.CB, (T0492)Y58.CB) [> -999.000 = 6.500 < 8.500] w=0.715 to nn1000 # Constraint # added constraint: bonus constraint((T0492)E38.CB, (T0492)R63.CB) [> -999.000 = 6.500 < 8.500] w=0.713 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V44.CB, (T0492)V55.CB) [> -999.000 = 6.500 < 8.500] w=0.714 to nn1000 # Constraint # added constraint: bonus constraint((T0492)T12.CB, (T0492)T34.CB) [> -999.000 = 6.500 < 8.500] w=0.711 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V13.CB, (T0492)S61.CB) [> -999.000 = 6.500 < 8.500] w=0.710 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V16.CB, (T0492)C37.CB) [> -999.000 = 6.500 < 8.500] w=0.710 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V16.CB, (T0492)K43.CB) [> -999.000 = 6.500 < 8.500] w=0.711 to nn1000 # Constraint # added constraint: bonus constraint((T0492)K43.CB, (T0492)G57.CA) [> -999.000 = 6.500 < 8.500] w=0.711 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L18.CB, (T0492)I70.CB) [> -999.000 = 6.500 < 8.500] w=0.710 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I33.CB, (T0492)N54.CB) [> -999.000 = 6.500 < 8.500] w=0.710 to nn1000 # Constraint # added constraint: bonus constraint((T0492)Y40.CB, (T0492)L62.CB) [> -999.000 = 6.500 < 8.500] w=0.710 to nn1000 # Constraint # added constraint: bonus constraint((T0492)E59.CB, (T0492)I70.CB) [> -999.000 = 6.500 < 8.500] w=0.711 to nn1000 # Constraint # added constraint: bonus constraint((T0492)K25.CB, (T0492)T34.CB) [> -999.000 = 6.500 < 8.500] w=0.709 to nn1000 # Constraint # added constraint: bonus constraint((T0492)K43.CB, (T0492)L60.CB) [> -999.000 = 6.500 < 8.500] w=0.710 to nn1000 # Constraint # added constraint: bonus constraint((T0492)E38.CB, (T0492)I53.CB) [> -999.000 = 6.500 < 8.500] w=0.708 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V15.CB, (T0492)P50.CB) [> -999.000 = 6.500 < 8.500] w=0.706 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V15.CB, (T0492)Q52.CB) [> -999.000 = 6.500 < 8.500] w=0.706 to nn1000 # Constraint # added constraint: bonus constraint((T0492)G32.CA, (T0492)V55.CB) [> -999.000 = 6.500 < 8.500] w=0.706 to nn1000 # Constraint # added constraint: bonus constraint((T0492)K43.CB, (T0492)V55.CB) [> -999.000 = 6.500 < 8.500] w=0.707 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L47.CB, (T0492)L60.CB) [> -999.000 = 6.500 < 8.500] w=0.707 to nn1000 # Constraint # added constraint: bonus constraint((T0492)R56.CB, (T0492)M69.CB) [> -999.000 = 6.500 < 8.500] w=0.706 to nn1000 # Constraint # added constraint: bonus constraint((T0492)K14.CB, (T0492)Q52.CB) [> -999.000 = 6.500 < 8.500] w=0.704 to nn1000 # Constraint # added constraint: bonus constraint((T0492)G32.CA, (T0492)P50.CB) [> -999.000 = 6.500 < 8.500] w=0.704 to nn1000 # Constraint # added constraint: bonus constraint((T0492)S3.CB, (T0492)H19.CB) [> -999.000 = 6.500 < 8.500] w=0.703 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I33.CB, (T0492)Q52.CB) [> -999.000 = 6.500 < 8.500] w=0.703 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V15.CB, (T0492)K43.CB) [> -999.000 = 6.500 < 8.500] w=0.702 to nn1000 # Constraint # added constraint: bonus constraint((T0492)A45.CB, (T0492)E71.CB) [> -999.000 = 6.500 < 8.500] w=0.702 to nn1000 # Constraint # added constraint: bonus constraint((T0492)R56.CB, (T0492)E71.CB) [> -999.000 = 6.500 < 8.500] w=0.702 to nn1000 # Constraint # added constraint: bonus constraint((T0492)S3.CB, (T0492)A45.CB) [> -999.000 = 6.500 < 8.500] w=0.700 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V16.CB, (T0492)I51.CB) [> -999.000 = 6.500 < 8.500] w=0.700 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L18.CB, (T0492)Q52.CB) [> -999.000 = 6.500 < 8.500] w=0.701 to nn1000 # Constraint # added constraint: bonus constraint((T0492)M31.CB, (T0492)I70.CB) [> -999.000 = 6.500 < 8.500] w=0.701 to nn1000 # Constraint # added constraint: bonus constraint((T0492)C37.CB, (T0492)R63.CB) [> -999.000 = 6.500 < 8.500] w=0.701 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L24.CB, (T0492)I39.CB) [> -999.000 = 6.500 < 8.500] w=0.699 to nn1000 # Constraint # added constraint: bonus constraint((T0492)R5.CB, (T0492)H19.CB) [> -999.000 = 6.500 < 8.500] w=0.698 to nn1000 # Constraint # added constraint: bonus constraint((T0492)T12.CB, (T0492)E38.CB) [> -999.000 = 6.500 < 8.500] w=0.698 to nn1000 # Constraint # added constraint: bonus constraint((T0492)M31.CB, (T0492)Y58.CB) [> -999.000 = 6.500 < 8.500] w=0.699 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V13.CB, (T0492)M69.CB) [> -999.000 = 6.500 < 8.500] w=0.697 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V15.CB, (T0492)S61.CB) [> -999.000 = 6.500 < 8.500] w=0.697 to nn1000 # Constraint # added constraint: bonus constraint((T0492)M31.CB, (T0492)V44.CB) [> -999.000 = 6.500 < 8.500] w=0.697 to nn1000 # Constraint # added constraint: bonus constraint((T0492)R35.CB, (T0492)N54.CB) [> -999.000 = 6.500 < 8.500] w=0.698 to nn1000 # Constraint # added constraint: bonus constraint((T0492)C37.CB, (T0492)P46.CB) [> -999.000 = 6.500 < 8.500] w=0.697 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L47.CB, (T0492)K64.CB) [> -999.000 = 6.500 < 8.500] w=0.697 to nn1000 # Constraint # added constraint: bonus constraint((T0492)A7.CB, (T0492)V55.CB) [> -999.000 = 6.500 < 8.500] w=0.694 to nn1000 # Constraint # added constraint: bonus constraint((T0492)C9.CB, (T0492)L18.CB) [> -999.000 = 6.500 < 8.500] w=0.695 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I39.CB, (T0492)R56.CB) [> -999.000 = 6.500 < 8.500] w=0.695 to nn1000 # Constraint # added constraint: bonus constraint((T0492)D49.CB, (T0492)L62.CB) [> -999.000 = 6.500 < 8.500] w=0.696 to nn1000 # Constraint # added constraint: bonus constraint((T0492)S3.CB, (T0492)Y40.CB) [> -999.000 = 6.500 < 8.500] w=0.693 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L18.CB, (T0492)N54.CB) [> -999.000 = 6.500 < 8.500] w=0.694 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L18.CB, (T0492)Y58.CB) [> -999.000 = 6.500 < 8.500] w=0.694 to nn1000 # Constraint # added constraint: bonus constraint((T0492)E38.CB, (T0492)Q52.CB) [> -999.000 = 6.500 < 8.500] w=0.694 to nn1000 # Constraint # added constraint: bonus constraint((T0492)K14.CB, (T0492)M69.CB) [> -999.000 = 6.500 < 8.500] w=0.693 to nn1000 # Constraint # added constraint: bonus constraint((T0492)M29.CB, (T0492)D49.CB) [> -999.000 = 6.500 < 8.500] w=0.692 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I39.CB, (T0492)P50.CB) [> -999.000 = 6.500 < 8.500] w=0.692 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I53.CB, (T0492)A66.CB) [> -999.000 = 6.500 < 8.500] w=0.693 to nn1000 # Constraint # added constraint: bonus constraint((T0492)T34.CB, (T0492)V55.CB) [> -999.000 = 6.500 < 8.500] w=0.690 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V44.CB, (T0492)M69.CB) [> -999.000 = 6.500 < 8.500] w=0.691 to nn1000 # Constraint # added constraint: bonus constraint((T0492)M29.CB, (T0492)V55.CB) [> -999.000 = 6.500 < 8.500] w=0.689 to nn1000 # Constraint # added constraint: bonus constraint((T0492)D6.CB, (T0492)V44.CB) [> -999.000 = 6.500 < 8.500] w=0.685 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V13.CB, (T0492)G32.CA) [> -999.000 = 6.500 < 8.500] w=0.686 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V16.CB, (T0492)M69.CB) [> -999.000 = 6.500 < 8.500] w=0.686 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I28.CB, (T0492)S61.CB) [> -999.000 = 6.500 < 8.500] w=0.686 to nn1000 # Constraint # added constraint: bonus constraint((T0492)M31.CB, (T0492)R42.CB) [> -999.000 = 6.500 < 8.500] w=0.686 to nn1000 # Constraint # added constraint: bonus constraint((T0492)S3.CB, (T0492)L18.CB) [> -999.000 = 6.500 < 8.500] w=0.684 to nn1000 # Constraint # added constraint: bonus constraint((T0492)H19.CB, (T0492)Y40.CB) [> -999.000 = 6.500 < 8.500] w=0.685 to nn1000 # Constraint # added constraint: bonus constraint((T0492)Y40.CB, (T0492)D49.CB) [> -999.000 = 6.500 < 8.500] w=0.685 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I28.CB, (T0492)P50.CB) [> -999.000 = 6.500 < 8.500] w=0.683 to nn1000 # Constraint # added constraint: bonus constraint((T0492)T34.CB, (T0492)S61.CB) [> -999.000 = 6.500 < 8.500] w=0.684 to nn1000 # Constraint # added constraint: bonus constraint((T0492)T34.CB, (T0492)Y58.CB) [> -999.000 = 6.500 < 8.500] w=0.683 to nn1000 # Constraint # added constraint: bonus constraint((T0492)T34.CB, (T0492)A66.CB) [> -999.000 = 6.500 < 8.500] w=0.683 to nn1000 # Constraint # added constraint: bonus constraint((T0492)P46.CB, (T0492)R56.CB) [> -999.000 = 6.500 < 8.500] w=0.683 to nn1000 # Constraint # added constraint: bonus constraint((T0492)D49.CB, (T0492)Y58.CB) [> -999.000 = 6.500 < 8.500] w=0.682 to nn1000 # Constraint # added constraint: bonus constraint((T0492)D49.CB, (T0492)A66.CB) [> -999.000 = 6.500 < 8.500] w=0.682 to nn1000 # Constraint # added constraint: bonus constraint((T0492)A7.CB, (T0492)I41.CB) [> -999.000 = 6.500 < 8.500] w=0.681 to nn1000 # Constraint # added constraint: bonus constraint((T0492)R5.CB, (T0492)V15.CB) [> -999.000 = 6.500 < 8.500] w=0.680 to nn1000 # Constraint # added constraint: bonus constraint((T0492)D6.CB, (T0492)V15.CB) [> -999.000 = 6.500 < 8.500] w=0.680 to nn1000 # Constraint # added constraint: bonus constraint((T0492)K14.CB, (T0492)I70.CB) [> -999.000 = 6.500 < 8.500] w=0.680 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I39.CB, (T0492)R63.CB) [> -999.000 = 6.500 < 8.500] w=0.681 to nn1000 # Constraint # added constraint: bonus constraint((T0492)Y40.CB, (T0492)P50.CB) [> -999.000 = 6.500 < 8.500] w=0.680 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V55.CB, (T0492)M69.CB) [> -999.000 = 6.500 < 8.500] w=0.681 to nn1000 # Constraint # added constraint: bonus constraint((T0492)K17.CB, (T0492)R42.CB) [> -999.000 = 6.500 < 8.500] w=0.679 to nn1000 # Constraint # added constraint: bonus constraint((T0492)K8.CB, (T0492)K17.CB) [> -999.000 = 6.500 < 8.500] w=0.678 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L18.CB, (T0492)R42.CB) [> -999.000 = 6.500 < 8.500] w=0.679 to nn1000 # Constraint # added constraint: bonus constraint((T0492)R27.CB, (T0492)I53.CB) [> -999.000 = 6.500 < 8.500] w=0.679 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I33.CB, (T0492)R56.CB) [> -999.000 = 6.500 < 8.500] w=0.679 to nn1000 # Constraint # added constraint: bonus constraint((T0492)A45.CB, (T0492)A66.CB) [> -999.000 = 6.500 < 8.500] w=0.679 to nn1000 # Constraint # added constraint: bonus constraint((T0492)R5.CB, (T0492)V16.CB) [> -999.000 = 6.500 < 8.500] w=0.676 to nn1000 # Constraint # added constraint: bonus constraint((T0492)Q11.CB, (T0492)N54.CB) [> -999.000 = 6.500 < 8.500] w=0.676 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L18.CB, (T0492)P50.CB) [> -999.000 = 6.500 < 8.500] w=0.676 to nn1000 # Constraint # added constraint: bonus constraint((T0492)T34.CB, (T0492)L60.CB) [> -999.000 = 6.500 < 8.500] w=0.676 to nn1000 # Constraint # added constraint: bonus constraint((T0492)A7.CB, (T0492)L24.CB) [> -999.000 = 6.500 < 8.500] w=0.674 to nn1000 # Constraint # added constraint: bonus constraint((T0492)M31.CB, (T0492)I51.CB) [> -999.000 = 6.500 < 8.500] w=0.675 to nn1000 # Constraint # added constraint: bonus constraint((T0492)K14.CB, (T0492)I53.CB) [> -999.000 = 6.500 < 8.500] w=0.673 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L24.CB, (T0492)L60.CB) [> -999.000 = 6.500 < 8.500] w=0.673 to nn1000 # Constraint # added constraint: bonus constraint((T0492)M31.CB, (T0492)L47.CB) [> -999.000 = 6.500 < 8.500] w=0.674 to nn1000 # Constraint # added constraint: bonus constraint((T0492)T34.CB, (T0492)K64.CB) [> -999.000 = 6.500 < 8.500] w=0.674 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)V44.CB) [> -999.000 = 6.500 < 8.500] w=0.672 to nn1000 # Constraint # added constraint: bonus constraint((T0492)D6.CB, (T0492)V16.CB) [> -999.000 = 6.500 < 8.500] w=0.672 to nn1000 # Constraint # added constraint: bonus constraint((T0492)Q11.CB, (T0492)V55.CB) [> -999.000 = 6.500 < 8.500] w=0.672 to nn1000 # Constraint # added constraint: bonus constraint((T0492)Y40.CB, (T0492)K64.CB) [> -999.000 = 6.500 < 8.500] w=0.671 to nn1000 # Constraint # added constraint: bonus constraint((T0492)Y40.CB, (T0492)E68.CB) [> -999.000 = 6.500 < 8.500] w=0.671 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L47.CB, (T0492)G57.CA) [> -999.000 = 6.500 < 8.500] w=0.672 to nn1000 # Constraint # added constraint: bonus constraint((T0492)M31.CB, (T0492)K43.CB) [> -999.000 = 6.500 < 8.500] w=0.670 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)K25.CB) [> -999.000 = 6.500 < 8.500] w=0.669 to nn1000 # Constraint # added constraint: bonus constraint((T0492)T12.CB, (T0492)G32.CA) [> -999.000 = 6.500 < 8.500] w=0.668 to nn1000 # Constraint # added constraint: bonus constraint((T0492)Y40.CB, (T0492)R63.CB) [> -999.000 = 6.500 < 8.500] w=0.669 to nn1000 # Constraint # added constraint: bonus constraint((T0492)G48.CA, (T0492)G57.CA) [> -999.000 = 6.500 < 8.500] w=0.668 to nn1000 # Constraint # added constraint: bonus constraint((T0492)P50.CB, (T0492)E59.CB) [> -999.000 = 6.500 < 8.500] w=0.668 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)Y58.CB) [> -999.000 = 6.500 < 8.500] w=0.667 to nn1000 # Constraint # added constraint: bonus constraint((T0492)K14.CB, (T0492)V55.CB) [> -999.000 = 6.500 < 8.500] w=0.666 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L24.CB, (T0492)A45.CB) [> -999.000 = 6.500 < 8.500] w=0.663 to nn1000 # Constraint # added constraint: bonus constraint((T0492)R27.CB, (T0492)L60.CB) [> -999.000 = 6.500 < 8.500] w=0.663 to nn1000 # Constraint # added constraint: bonus constraint((T0492)R35.CB, (T0492)L47.CB) [> -999.000 = 6.500 < 8.500] w=0.663 to nn1000 # Constraint # added constraint: bonus constraint((T0492)K43.CB, (T0492)R63.CB) [> -999.000 = 6.500 < 8.500] w=0.663 to nn1000 # Constraint # added constraint: bonus constraint((T0492)C9.CB, (T0492)V44.CB) [> -999.000 = 6.500 < 8.500] w=0.661 to nn1000 # Constraint # added constraint: bonus constraint((T0492)Q11.CB, (T0492)G20.CA) [> -999.000 = 6.500 < 8.500] w=0.661 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L18.CB, (T0492)C37.CB) [> -999.000 = 6.500 < 8.500] w=0.661 to nn1000 # Constraint # added constraint: bonus constraint((T0492)D49.CB, (T0492)S65.CB) [> -999.000 = 6.500 < 8.500] w=0.661 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)T34.CB) [> -999.000 = 6.500 < 8.500] w=0.660 to nn1000 # Constraint # added constraint: bonus constraint((T0492)G57.CA, (T0492)M69.CB) [> -999.000 = 6.500 < 8.500] w=0.660 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L18.CB, (T0492)A67.CB) [> -999.000 = 6.500 < 8.500] w=0.659 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L24.CB, (T0492)I41.CB) [> -999.000 = 6.500 < 8.500] w=0.659 to nn1000 # Constraint # added constraint: bonus constraint((T0492)T34.CB, (T0492)N54.CB) [> -999.000 = 6.500 < 8.500] w=0.659 to nn1000 # Constraint # added constraint: bonus constraint((T0492)K25.CB, (T0492)Q52.CB) [> -999.000 = 6.500 < 8.500] w=0.657 to nn1000 # Constraint # added constraint: bonus constraint((T0492)G32.CA, (T0492)V44.CB) [> -999.000 = 6.500 < 8.500] w=0.658 to nn1000 # Constraint # added constraint: bonus constraint((T0492)G32.CA, (T0492)I70.CB) [> -999.000 = 6.500 < 8.500] w=0.657 to nn1000 # Constraint # added constraint: bonus constraint((T0492)C37.CB, (T0492)E71.CB) [> -999.000 = 6.500 < 8.500] w=0.657 to nn1000 # Constraint # added constraint: bonus constraint((T0492)Y40.CB, (T0492)A67.CB) [> -999.000 = 6.500 < 8.500] w=0.658 to nn1000 # Constraint # added constraint: bonus constraint((T0492)K43.CB, (T0492)A66.CB) [> -999.000 = 6.500 < 8.500] w=0.658 to nn1000 # Constraint # added constraint: bonus constraint((T0492)K43.CB, (T0492)I70.CB) [> -999.000 = 6.500 < 8.500] w=0.657 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V13.CB, (T0492)T34.CB) [> -999.000 = 6.500 < 8.500] w=0.656 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L24.CB, (T0492)I53.CB) [> -999.000 = 6.500 < 8.500] w=0.655 to nn1000 # Constraint # added constraint: bonus constraint((T0492)R42.CB, (T0492)A66.CB) [> -999.000 = 6.500 < 8.500] w=0.655 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V44.CB, (T0492)I70.CB) [> -999.000 = 6.500 < 8.500] w=0.656 to nn1000 # Constraint # added constraint: bonus constraint((T0492)C9.CB, (T0492)K43.CB) [> -999.000 = 6.500 < 8.500] w=0.654 to nn1000 # Constraint # added constraint: bonus constraint((T0492)M29.CB, (T0492)Y58.CB) [> -999.000 = 6.500 < 8.500] w=0.655 to nn1000 # Constraint # added constraint: bonus constraint((T0492)G32.CA, (T0492)A45.CB) [> -999.000 = 6.500 < 8.500] w=0.654 to nn1000 # Constraint # added constraint: bonus constraint((T0492)G32.CA, (T0492)S61.CB) [> -999.000 = 6.500 < 8.500] w=0.655 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L18.CB, (T0492)S61.CB) [> -999.000 = 6.500 < 8.500] w=0.652 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I28.CB, (T0492)R42.CB) [> -999.000 = 6.500 < 8.500] w=0.653 to nn1000 # Constraint # added constraint: bonus constraint((T0492)A7.CB, (T0492)I39.CB) [> -999.000 = 6.500 < 8.500] w=0.651 to nn1000 # Constraint # added constraint: bonus constraint((T0492)M29.CB, (T0492)P46.CB) [> -999.000 = 6.500 < 8.500] w=0.651 to nn1000 # Constraint # added constraint: bonus constraint((T0492)G32.CA, (T0492)L60.CB) [> -999.000 = 6.500 < 8.500] w=0.652 to nn1000 # Constraint # added constraint: bonus constraint((T0492)T34.CB, (T0492)Q52.CB) [> -999.000 = 6.500 < 8.500] w=0.652 to nn1000 # Constraint # added constraint: bonus constraint((T0492)R56.CB, (T0492)A66.CB) [> -999.000 = 6.500 < 8.500] w=0.652 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I39.CB, (T0492)Y58.CB) [> -999.000 = 6.500 < 8.500] w=0.650 to nn1000 # Constraint # added constraint: bonus constraint((T0492)D6.CB, (T0492)H19.CB) [> -999.000 = 6.500 < 8.500] w=0.649 to nn1000 # Constraint # added constraint: bonus constraint((T0492)G10.CA, (T0492)K43.CB) [> -999.000 = 6.500 < 8.500] w=0.648 to nn1000 # Constraint # added constraint: bonus constraint((T0492)K14.CB, (T0492)T34.CB) [> -999.000 = 6.500 < 8.500] w=0.647 to nn1000 # Constraint # added constraint: bonus constraint((T0492)T34.CB, (T0492)I51.CB) [> -999.000 = 6.500 < 8.500] w=0.647 to nn1000 # Constraint # added constraint: bonus constraint((T0492)T34.CB, (T0492)G57.CA) [> -999.000 = 6.500 < 8.500] w=0.647 to nn1000 # Constraint # added constraint: bonus constraint((T0492)G36.CA, (T0492)P46.CB) [> -999.000 = 6.500 < 8.500] w=0.647 to nn1000 # Constraint # added constraint: bonus constraint((T0492)A45.CB, (T0492)G57.CA) [> -999.000 = 6.500 < 8.500] w=0.647 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L47.CB, (T0492)R63.CB) [> -999.000 = 6.500 < 8.500] w=0.647 to nn1000 # Constraint # added constraint: bonus constraint((T0492)G10.CA, (T0492)V44.CB) [> -999.000 = 6.500 < 8.500] w=0.646 to nn1000 # Constraint # added constraint: bonus constraint((T0492)T12.CB, (T0492)R63.CB) [> -999.000 = 6.500 < 8.500] w=0.646 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L18.CB, (T0492)E38.CB) [> -999.000 = 6.500 < 8.500] w=0.646 to nn1000 # Constraint # added constraint: bonus constraint((T0492)M29.CB, (T0492)K43.CB) [> -999.000 = 6.500 < 8.500] w=0.646 to nn1000 # Constraint # added constraint: bonus constraint((T0492)R42.CB, (T0492)R63.CB) [> -999.000 = 6.500 < 8.500] w=0.646 to nn1000 # Constraint # added constraint: bonus constraint((T0492)P46.CB, (T0492)Y58.CB) [> -999.000 = 6.500 < 8.500] w=0.646 to nn1000 # Constraint # added constraint: bonus constraint((T0492)S3.CB, (T0492)E71.CB) [> -999.000 = 6.500 < 8.500] w=0.644 to nn1000 # Constraint # added constraint: bonus constraint((T0492)Q11.CB, (T0492)R56.CB) [> -999.000 = 6.500 < 8.500] w=0.644 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V16.CB, (T0492)V55.CB) [> -999.000 = 6.500 < 8.500] w=0.645 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)A45.CB) [> -999.000 = 6.500 < 8.500] w=0.643 to nn1000 # Constraint # added constraint: bonus constraint((T0492)K17.CB, (T0492)V44.CB) [> -999.000 = 6.500 < 8.500] w=0.644 to nn1000 # Constraint # added constraint: bonus constraint((T0492)C37.CB, (T0492)K64.CB) [> -999.000 = 6.500 < 8.500] w=0.645 to nn1000 # Constraint # added constraint: bonus constraint((T0492)G36.CA, (T0492)R63.CB) [> -999.000 = 6.500 < 8.500] w=0.643 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V44.CB, (T0492)L62.CB) [> -999.000 = 6.500 < 8.500] w=0.644 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V13.CB, (T0492)Q52.CB) [> -999.000 = 6.500 < 8.500] w=0.642 to nn1000 # Constraint # added constraint: bonus constraint((T0492)G20.CA, (T0492)M31.CB) [> -999.000 = 6.500 < 8.500] w=0.642 to nn1000 # Constraint # added constraint: bonus constraint((T0492)R35.CB, (T0492)P46.CB) [> -999.000 = 6.500 < 8.500] w=0.642 to nn1000 # Constraint # added constraint: bonus constraint((T0492)M31.CB, (T0492)P50.CB) [> -999.000 = 6.500 < 8.500] w=0.641 to nn1000 # Constraint # added constraint: bonus constraint((T0492)M31.CB, (T0492)Q52.CB) [> -999.000 = 6.500 < 8.500] w=0.641 to nn1000 # Constraint # added constraint: bonus constraint((T0492)E38.CB, (T0492)D49.CB) [> -999.000 = 6.500 < 8.500] w=0.642 to nn1000 # Constraint # added constraint: bonus constraint((T0492)A7.CB, (T0492)I28.CB) [> -999.000 = 6.500 < 8.500] w=0.640 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V13.CB, (T0492)I51.CB) [> -999.000 = 6.500 < 8.500] w=0.640 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L18.CB, (T0492)V44.CB) [> -999.000 = 6.500 < 8.500] w=0.641 to nn1000 # Constraint # added constraint: bonus constraint((T0492)M29.CB, (T0492)A66.CB) [> -999.000 = 6.500 < 8.500] w=0.641 to nn1000 # Constraint # added constraint: bonus constraint((T0492)E38.CB, (T0492)I70.CB) [> -999.000 = 6.500 < 8.500] w=0.642 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I33.CB, (T0492)D49.CB) [> -999.000 = 6.500 < 8.500] w=0.640 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V16.CB, (T0492)I33.CB) [> -999.000 = 6.500 < 8.500] w=0.638 to nn1000 # Constraint # added constraint: bonus constraint((T0492)C37.CB, (T0492)L47.CB) [> -999.000 = 6.500 < 8.500] w=0.639 to nn1000 # Constraint # added constraint: bonus constraint((T0492)K43.CB, (T0492)L62.CB) [> -999.000 = 6.500 < 8.500] w=0.638 to nn1000 # Constraint # added constraint: bonus constraint((T0492)A45.CB, (T0492)L62.CB) [> -999.000 = 6.500 < 8.500] w=0.639 to nn1000 # Constraint # added constraint: bonus constraint((T0492)G48.CA, (T0492)K64.CB) [> -999.000 = 6.500 < 8.500] w=0.639 to nn1000 # Constraint # added constraint: bonus constraint((T0492)R5.CB, (T0492)V44.CB) [> -999.000 = 6.500 < 8.500] w=0.637 to nn1000 # Constraint # added constraint: bonus constraint((T0492)A7.CB, (T0492)A45.CB) [> -999.000 = 6.500 < 8.500] w=0.637 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)D49.CB) [> -999.000 = 6.500 < 8.500] w=0.636 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V13.CB, (T0492)R63.CB) [> -999.000 = 6.500 < 8.500] w=0.637 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V15.CB, (T0492)Y58.CB) [> -999.000 = 6.500 < 8.500] w=0.637 to nn1000 # Constraint # added constraint: bonus constraint((T0492)E38.CB, (T0492)G57.CA) [> -999.000 = 6.500 < 8.500] w=0.637 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V55.CB, (T0492)E71.CB) [> -999.000 = 6.500 < 8.500] w=0.637 to nn1000 # Constraint # added constraint: bonus constraint((T0492)K14.CB, (T0492)R56.CB) [> -999.000 = 6.500 < 8.500] w=0.635 to nn1000 # Constraint # added constraint: bonus constraint((T0492)R56.CB, (T0492)E68.CB) [> -999.000 = 6.500 < 8.500] w=0.635 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)R63.CB) [> -999.000 = 6.500 < 8.500] w=0.633 to nn1000 # Constraint # added constraint: bonus constraint((T0492)A7.CB, (T0492)A67.CB) [> -999.000 = 6.500 < 8.500] w=0.633 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I39.CB, (T0492)D49.CB) [> -999.000 = 6.500 < 8.500] w=0.634 to nn1000 # Constraint # added constraint: bonus constraint((T0492)P46.CB, (T0492)K64.CB) [> -999.000 = 6.500 < 8.500] w=0.634 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V13.CB, (T0492)R56.CB) [> -999.000 = 6.500 < 8.500] w=0.632 to nn1000 # Constraint # added constraint: bonus constraint((T0492)G20.CA, (T0492)E59.CB) [> -999.000 = 6.500 < 8.500] w=0.633 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V16.CB, (T0492)R27.CB) [> -999.000 = 6.500 < 8.500] w=0.631 to nn1000 # Constraint # added constraint: bonus constraint((T0492)S3.CB, (T0492)V13.CB) [> -999.000 = 6.500 < 8.500] w=0.630 to nn1000 # Constraint # added constraint: bonus constraint((T0492)S3.CB, (T0492)R56.CB) [> -999.000 = 6.500 < 8.500] w=0.630 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)G36.CA) [> -999.000 = 6.500 < 8.500] w=0.631 to nn1000 # Constraint # added constraint: bonus constraint((T0492)M29.CB, (T0492)I70.CB) [> -999.000 = 6.500 < 8.500] w=0.630 to nn1000 # Constraint # added constraint: bonus constraint((T0492)K8.CB, (T0492)H19.CB) [> -999.000 = 6.500 < 8.500] w=0.628 to nn1000 # Constraint # added constraint: bonus constraint((T0492)C9.CB, (T0492)L47.CB) [> -999.000 = 6.500 < 8.500] w=0.628 to nn1000 # Constraint # added constraint: bonus constraint((T0492)K17.CB, (T0492)K43.CB) [> -999.000 = 6.500 < 8.500] w=0.629 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I33.CB, (T0492)L47.CB) [> -999.000 = 6.500 < 8.500] w=0.629 to nn1000 # Constraint # added constraint: bonus constraint((T0492)D6.CB, (T0492)A45.CB) [> -999.000 = 6.500 < 8.500] w=0.626 to nn1000 # Constraint # added constraint: bonus constraint((T0492)A7.CB, (T0492)L62.CB) [> -999.000 = 6.500 < 8.500] w=0.627 to nn1000 # Constraint # added constraint: bonus constraint((T0492)K17.CB, (T0492)Q52.CB) [> -999.000 = 6.500 < 8.500] w=0.627 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I33.CB, (T0492)R63.CB) [> -999.000 = 6.500 < 8.500] w=0.627 to nn1000 # Constraint # added constraint: bonus constraint((T0492)R42.CB, (T0492)G57.CA) [> -999.000 = 6.500 < 8.500] w=0.627 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I53.CB, (T0492)K64.CB) [> -999.000 = 6.500 < 8.500] w=0.628 to nn1000 # Constraint # added constraint: bonus constraint((T0492)R5.CB, (T0492)R56.CB) [> -999.000 = 6.500 < 8.500] w=0.623 to nn1000 # Constraint # added constraint: bonus constraint((T0492)C9.CB, (T0492)G20.CA) [> -999.000 = 6.500 < 8.500] w=0.624 to nn1000 # Constraint # added constraint: bonus constraint((T0492)C9.CB, (T0492)M31.CB) [> -999.000 = 6.500 < 8.500] w=0.625 to nn1000 # Constraint # added constraint: bonus constraint((T0492)K14.CB, (T0492)Y58.CB) [> -999.000 = 6.500 < 8.500] w=0.624 to nn1000 # Constraint # added constraint: bonus constraint((T0492)K17.CB, (T0492)E71.CB) [> -999.000 = 6.500 < 8.500] w=0.625 to nn1000 # Constraint # added constraint: bonus constraint((T0492)D49.CB, (T0492)M69.CB) [> -999.000 = 6.500 < 8.500] w=0.625 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V15.CB, (T0492)G32.CA) [> -999.000 = 6.500 < 8.500] w=0.623 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L18.CB, (T0492)K43.CB) [> -999.000 = 6.500 < 8.500] w=0.623 to nn1000 # Constraint # added constraint: bonus constraint((T0492)R27.CB, (T0492)V55.CB) [> -999.000 = 6.500 < 8.500] w=0.623 to nn1000 # Constraint # added constraint: bonus constraint((T0492)T34.CB, (T0492)G48.CA) [> -999.000 = 6.500 < 8.500] w=0.622 to nn1000 # Constraint # added constraint: bonus constraint((T0492)E38.CB, (T0492)L62.CB) [> -999.000 = 6.500 < 8.500] w=0.623 to nn1000 # Constraint # added constraint: bonus constraint((T0492)S3.CB, (T0492)I41.CB) [> -999.000 = 6.500 < 8.500] w=0.621 to nn1000 # Constraint # added constraint: bonus constraint((T0492)K25.CB, (T0492)C37.CB) [> -999.000 = 6.500 < 8.500] w=0.620 to nn1000 # Constraint # added constraint: bonus constraint((T0492)T12.CB, (T0492)S61.CB) [> -999.000 = 6.500 < 8.500] w=0.619 to nn1000 # Constraint # added constraint: bonus constraint((T0492)T12.CB, (T0492)M69.CB) [> -999.000 = 6.500 < 8.500] w=0.619 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V13.CB, (T0492)L24.CB) [> -999.000 = 6.500 < 8.500] w=0.620 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V13.CB, (T0492)C37.CB) [> -999.000 = 6.500 < 8.500] w=0.620 to nn1000 # Constraint # added constraint: bonus constraint((T0492)T34.CB, (T0492)P50.CB) [> -999.000 = 6.500 < 8.500] w=0.620 to nn1000 # Constraint # added constraint: bonus constraint((T0492)E38.CB, (T0492)K64.CB) [> -999.000 = 6.500 < 8.500] w=0.620 to nn1000 # Constraint # added constraint: bonus constraint((T0492)Y40.CB, (T0492)A66.CB) [> -999.000 = 6.500 < 8.500] w=0.620 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L18.CB, (T0492)E59.CB) [> -999.000 = 6.500 < 8.500] w=0.619 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)Y40.CB) [> -999.000 = 6.500 < 8.500] w=0.617 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L18.CB, (T0492)M29.CB) [> -999.000 = 6.500 < 8.500] w=0.617 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I28.CB, (T0492)V44.CB) [> -999.000 = 6.500 < 8.500] w=0.618 to nn1000 # Constraint # added constraint: bonus constraint((T0492)G32.CA, (T0492)R63.CB) [> -999.000 = 6.500 < 8.500] w=0.619 to nn1000 # Constraint # added constraint: bonus constraint((T0492)R56.CB, (T0492)A67.CB) [> -999.000 = 6.500 < 8.500] w=0.618 to nn1000 # Constraint # added constraint: bonus constraint((T0492)A7.CB, (T0492)S61.CB) [> -999.000 = 6.500 < 8.500] w=0.616 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L24.CB, (T0492)V55.CB) [> -999.000 = 6.500 < 8.500] w=0.615 to nn1000 # Constraint # added constraint: bonus constraint((T0492)G32.CA, (T0492)D49.CB) [> -999.000 = 6.500 < 8.500] w=0.616 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I33.CB, (T0492)G57.CA) [> -999.000 = 6.500 < 8.500] w=0.616 to nn1000 # Constraint # added constraint: bonus constraint((T0492)C37.CB, (T0492)L62.CB) [> -999.000 = 6.500 < 8.500] w=0.615 to nn1000 # Constraint # added constraint: bonus constraint((T0492)E38.CB, (T0492)L47.CB) [> -999.000 = 6.500 < 8.500] w=0.615 to nn1000 # Constraint # added constraint: bonus constraint((T0492)E59.CB, (T0492)E68.CB) [> -999.000 = 6.500 < 8.500] w=0.614 to nn1000 # Constraint # added constraint: bonus constraint((T0492)S3.CB, (T0492)T12.CB) [> -999.000 = 6.500 < 8.500] w=0.612 to nn1000 # Constraint # added constraint: bonus constraint((T0492)C9.CB, (T0492)R35.CB) [> -999.000 = 6.500 < 8.500] w=0.613 to nn1000 # Constraint # added constraint: bonus constraint((T0492)K25.CB, (T0492)V44.CB) [> -999.000 = 6.500 < 8.500] w=0.612 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I33.CB, (T0492)E59.CB) [> -999.000 = 6.500 < 8.500] w=0.612 to nn1000 # Constraint # added constraint: bonus constraint((T0492)G48.CA, (T0492)R63.CB) [> -999.000 = 6.500 < 8.500] w=0.612 to nn1000 # Constraint # added constraint: bonus constraint((T0492)R35.CB, (T0492)G48.CA) [> -999.000 = 6.500 < 8.500] w=0.611 to nn1000 # Constraint # added constraint: bonus constraint((T0492)R5.CB, (T0492)L24.CB) [> -999.000 = 6.500 < 8.500] w=0.610 to nn1000 # Constraint # added constraint: bonus constraint((T0492)R5.CB, (T0492)K43.CB) [> -999.000 = 6.500 < 8.500] w=0.609 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V15.CB, (T0492)M69.CB) [> -999.000 = 6.500 < 8.500] w=0.609 to nn1000 # Constraint # added constraint: bonus constraint((T0492)H19.CB, (T0492)V44.CB) [> -999.000 = 6.500 < 8.500] w=0.610 to nn1000 # Constraint # added constraint: bonus constraint((T0492)R35.CB, (T0492)G57.CA) [> -999.000 = 6.500 < 8.500] w=0.611 to nn1000 # Constraint # added constraint: bonus constraint((T0492)T34.CB, (T0492)I53.CB) [> -999.000 = 6.500 < 8.500] w=0.609 to nn1000 # Constraint # added constraint: bonus constraint((T0492)H19.CB, (T0492)Y58.CB) [> -999.000 = 6.500 < 8.500] w=0.608 to nn1000 # Constraint # added constraint: bonus constraint((T0492)S3.CB, (T0492)N54.CB) [> -999.000 = 6.500 < 8.500] w=0.607 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)C37.CB) [> -999.000 = 6.500 < 8.500] w=0.608 to nn1000 # Constraint # added constraint: bonus constraint((T0492)C9.CB, (T0492)T21.CB) [> -999.000 = 6.500 < 8.500] w=0.608 to nn1000 # Constraint # added constraint: bonus constraint((T0492)G10.CA, (T0492)R42.CB) [> -999.000 = 6.500 < 8.500] w=0.607 to nn1000 # Constraint # added constraint: bonus constraint((T0492)T12.CB, (T0492)K64.CB) [> -999.000 = 6.500 < 8.500] w=0.607 to nn1000 # Constraint # added constraint: bonus constraint((T0492)G32.CA, (T0492)I53.CB) [> -999.000 = 6.500 < 8.500] w=0.607 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V44.CB, (T0492)E68.CB) [> -999.000 = 6.500 < 8.500] w=0.608 to nn1000 # Constraint # added constraint: bonus constraint((T0492)T12.CB, (T0492)R35.CB) [> -999.000 = 6.500 < 8.500] w=0.606 to nn1000 # Constraint # added constraint: bonus constraint((T0492)T34.CB, (T0492)E59.CB) [> -999.000 = 6.500 < 8.500] w=0.606 to nn1000 # Constraint # added constraint: bonus constraint((T0492)C37.CB, (T0492)L60.CB) [> -999.000 = 6.500 < 8.500] w=0.606 to nn1000 # Constraint # added constraint: bonus constraint((T0492)K43.CB, (T0492)E68.CB) [> -999.000 = 6.500 < 8.500] w=0.607 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)Q52.CB) [> -999.000 = 6.500 < 8.500] w=0.605 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V44.CB, (T0492)K64.CB) [> -999.000 = 6.500 < 8.500] w=0.605 to nn1000 # Constraint # added constraint: bonus constraint((T0492)D49.CB, (T0492)L60.CB) [> -999.000 = 6.500 < 8.500] w=0.606 to nn1000 # Constraint # added constraint: bonus constraint((T0492)G10.CA, (T0492)G20.CA) [> -999.000 = 6.500 < 8.500] w=0.605 to nn1000 # Constraint # added constraint: bonus constraint((T0492)Q11.CB, (T0492)L47.CB) [> -999.000 = 6.500 < 8.500] w=0.605 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V15.CB, (T0492)A45.CB) [> -999.000 = 6.500 < 8.500] w=0.604 to nn1000 # Constraint # added constraint: bonus constraint((T0492)G20.CA, (T0492)L60.CB) [> -999.000 = 6.500 < 8.500] w=0.603 to nn1000 # Constraint # added constraint: bonus constraint((T0492)S3.CB, (T0492)G20.CA) [> -999.000 = 6.500 < 8.500] w=0.602 to nn1000 # Constraint # added constraint: bonus constraint((T0492)S3.CB, (T0492)V55.CB) [> -999.000 = 6.500 < 8.500] w=0.603 to nn1000 # Constraint # added constraint: bonus constraint((T0492)T34.CB, (T0492)A67.CB) [> -999.000 = 6.500 < 8.500] w=0.603 to nn1000 # Constraint # added constraint: bonus constraint((T0492)C9.CB, (T0492)R56.CB) [> -999.000 = 6.500 < 8.500] w=0.601 to nn1000 # Constraint # added constraint: bonus constraint((T0492)G20.CA, (T0492)K43.CB) [> -999.000 = 6.500 < 8.500] w=0.602 to nn1000 # Constraint # added constraint: bonus constraint((T0492)R35.CB, (T0492)D49.CB) [> -999.000 = 6.500 < 8.500] w=0.602 to nn1000 # Constraint # added constraint: bonus constraint((T0492)P46.CB, (T0492)G57.CA) [> -999.000 = 6.500 < 8.500] w=0.603 to nn1000 # Constraint # added constraint: bonus constraint((T0492)G36.CA, (T0492)L47.CB) [> -999.000 = 6.500 < 8.500] w=0.601 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V16.CB, (T0492)K25.CB) [> -999.000 = 6.500 < 8.500] w=0.600 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I39.CB, (T0492)A66.CB) [> -999.000 = 6.500 < 8.500] w=0.600 to nn1000 # Constraint # added constraint: bonus constraint((T0492)P46.CB, (T0492)S61.CB) [> -999.000 = 6.500 < 8.500] w=0.599 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L47.CB, (T0492)L62.CB) [> -999.000 = 6.500 < 8.500] w=0.600 to nn1000 # Constraint # added constraint: bonus constraint((T0492)R5.CB, (T0492)A45.CB) [> -999.000 = 6.500 < 8.500] w=0.599 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)K43.CB) [> -999.000 = 6.500 < 8.500] w=0.597 to nn1000 # Constraint # added constraint: bonus constraint((T0492)D6.CB, (T0492)L24.CB) [> -999.000 = 6.500 < 8.500] w=0.597 to nn1000 # Constraint # added constraint: bonus constraint((T0492)H19.CB, (T0492)K43.CB) [> -999.000 = 6.500 < 8.500] w=0.597 to nn1000 # Constraint # added constraint: bonus constraint((T0492)T34.CB, (T0492)M69.CB) [> -999.000 = 6.500 < 8.500] w=0.596 to nn1000 # Constraint # added constraint: bonus constraint((T0492)A45.CB, (T0492)I70.CB) [> -999.000 = 6.500 < 8.500] w=0.596 to nn1000 # Constraint # added constraint: bonus constraint((T0492)A7.CB, (T0492)P50.CB) [> -999.000 = 6.500 < 8.500] w=0.591 to nn1000 # Constraint # added constraint: bonus constraint((T0492)G10.CA, (T0492)G32.CA) [> -999.000 = 6.500 < 8.500] w=0.592 to nn1000 # Constraint # added constraint: bonus constraint((T0492)D49.CB, (T0492)E59.CB) [> -999.000 = 6.500 < 8.500] w=0.592 to nn1000 # Constraint # added constraint: bonus constraint((T0492)N54.CB, (T0492)E68.CB) [> -999.000 = 6.500 < 8.500] w=0.592 to nn1000 # Constraint # added constraint: bonus constraint((T0492)C9.CB, (T0492)A45.CB) [> -999.000 = 6.500 < 8.500] w=0.591 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)G20.CA) [> -999.000 = 6.500 < 8.500] w=0.590 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L18.CB, (T0492)A45.CB) [> -999.000 = 6.500 < 8.500] w=0.590 to nn1000 # Constraint # added constraint: bonus constraint((T0492)A7.CB, (T0492)L60.CB) [> -999.000 = 6.500 < 8.500] w=0.588 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V16.CB, (T0492)Y58.CB) [> -999.000 = 6.500 < 8.500] w=0.588 to nn1000 # Constraint # added constraint: bonus constraint((T0492)H19.CB, (T0492)N54.CB) [> -999.000 = 6.500 < 8.500] w=0.588 to nn1000 # Constraint # added constraint: bonus constraint((T0492)M31.CB, (T0492)D49.CB) [> -999.000 = 6.500 < 8.500] w=0.588 to nn1000 # Constraint # added constraint: bonus constraint((T0492)M31.CB, (T0492)N54.CB) [> -999.000 = 6.500 < 8.500] w=0.588 to nn1000 # Constraint # added constraint: bonus constraint((T0492)T34.CB, (T0492)R63.CB) [> -999.000 = 6.500 < 8.500] w=0.588 to nn1000 # Constraint # added constraint: bonus constraint((T0492)C37.CB, (T0492)D49.CB) [> -999.000 = 6.500 < 8.500] w=0.589 to nn1000 # Constraint # added constraint: bonus constraint((T0492)G48.CA, (T0492)Y58.CB) [> -999.000 = 6.500 < 8.500] w=0.589 to nn1000 # Constraint # added constraint: bonus constraint((T0492)T12.CB, (T0492)C37.CB) [> -999.000 = 6.500 < 8.500] w=0.586 to nn1000 # Constraint # added constraint: bonus constraint((T0492)K14.CB, (T0492)P50.CB) [> -999.000 = 6.500 < 8.500] w=0.586 to nn1000 # Constraint # added constraint: bonus constraint((T0492)K14.CB, (T0492)S61.CB) [> -999.000 = 6.500 < 8.500] w=0.586 to nn1000 # Constraint # added constraint: bonus constraint((T0492)K25.CB, (T0492)P46.CB) [> -999.000 = 6.500 < 8.500] w=0.587 to nn1000 # Constraint # added constraint: bonus constraint((T0492)C37.CB, (T0492)G57.CA) [> -999.000 = 6.500 < 8.500] w=0.587 to nn1000 # Constraint # added constraint: bonus constraint((T0492)E38.CB, (T0492)Y58.CB) [> -999.000 = 6.500 < 8.500] w=0.587 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V44.CB, (T0492)A67.CB) [> -999.000 = 6.500 < 8.500] w=0.588 to nn1000 # Constraint # added constraint: bonus constraint((T0492)H19.CB, (T0492)E38.CB) [> -999.000 = 6.500 < 8.500] w=0.586 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L24.CB, (T0492)S61.CB) [> -999.000 = 6.500 < 8.500] w=0.587 to nn1000 # Constraint # added constraint: bonus constraint((T0492)A45.CB, (T0492)E68.CB) [> -999.000 = 6.500 < 8.500] w=0.587 to nn1000 # Constraint # added constraint: bonus constraint((T0492)G32.CA, (T0492)P46.CB) [> -999.000 = 6.500 < 8.500] w=0.584 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I41.CB, (T0492)R56.CB) [> -999.000 = 6.500 < 8.500] w=0.585 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I41.CB, (T0492)A66.CB) [> -999.000 = 6.500 < 8.500] w=0.585 to nn1000 # Constraint # added constraint: bonus constraint((T0492)G57.CA, (T0492)A66.CB) [> -999.000 = 6.500 < 8.500] w=0.586 to nn1000 # Constraint # added constraint: bonus constraint((T0492)K14.CB, (T0492)I51.CB) [> -999.000 = 6.500 < 8.500] w=0.583 to nn1000 # Constraint # added constraint: bonus constraint((T0492)G20.CA, (T0492)Y40.CB) [> -999.000 = 6.500 < 8.500] w=0.584 to nn1000 # Constraint # added constraint: bonus constraint((T0492)K25.CB, (T0492)R35.CB) [> -999.000 = 6.500 < 8.500] w=0.584 to nn1000 # Constraint # added constraint: bonus constraint((T0492)D30.CB, (T0492)A45.CB) [> -999.000 = 6.500 < 8.500] w=0.584 to nn1000 # Constraint # added constraint: bonus constraint((T0492)P46.CB, (T0492)R63.CB) [> -999.000 = 6.500 < 8.500] w=0.585 to nn1000 # Constraint # added constraint: bonus constraint((T0492)C37.CB, (T0492)S61.CB) [> -999.000 = 6.500 < 8.500] w=0.584 to nn1000 # Constraint # added constraint: bonus constraint((T0492)S3.CB, (T0492)Y58.CB) [> -999.000 = 6.500 < 8.500] w=0.582 to nn1000 # Constraint # added constraint: bonus constraint((T0492)R5.CB, (T0492)D49.CB) [> -999.000 = 6.500 < 8.500] w=0.582 to nn1000 # Constraint # added constraint: bonus constraint((T0492)S3.CB, (T0492)M69.CB) [> -999.000 = 6.500 < 8.500] w=0.581 to nn1000 # Constraint # added constraint: bonus constraint((T0492)T12.CB, (T0492)T21.CB) [> -999.000 = 6.500 < 8.500] w=0.581 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V15.CB, (T0492)G36.CA) [> -999.000 = 6.500 < 8.500] w=0.582 to nn1000 # Constraint # added constraint: bonus constraint((T0492)A45.CB, (T0492)A67.CB) [> -999.000 = 6.500 < 8.500] w=0.582 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)L47.CB) [> -999.000 = 6.500 < 8.500] w=0.580 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)N54.CB) [> -999.000 = 6.500 < 8.500] w=0.580 to nn1000 # Constraint # added constraint: bonus constraint((T0492)C9.CB, (T0492)P46.CB) [> -999.000 = 6.500 < 8.500] w=0.580 to nn1000 # Constraint # added constraint: bonus constraint((T0492)Q11.CB, (T0492)G32.CA) [> -999.000 = 6.500 < 8.500] w=0.581 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L18.CB, (T0492)G36.CA) [> -999.000 = 6.500 < 8.500] w=0.580 to nn1000 # Constraint # added constraint: bonus constraint((T0492)M29.CB, (T0492)L62.CB) [> -999.000 = 6.500 < 8.500] w=0.581 to nn1000 # Constraint # added constraint: bonus constraint((T0492)K43.CB, (T0492)A67.CB) [> -999.000 = 6.500 < 8.500] w=0.581 to nn1000 # Constraint # added constraint: bonus constraint((T0492)G10.CA, (T0492)R56.CB) [> -999.000 = 6.500 < 8.500] w=0.579 to nn1000 # Constraint # added constraint: bonus constraint((T0492)K17.CB, (T0492)N54.CB) [> -999.000 = 6.500 < 8.500] w=0.579 to nn1000 # Constraint # added constraint: bonus constraint((T0492)H19.CB, (T0492)R56.CB) [> -999.000 = 6.500 < 8.500] w=0.579 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L24.CB, (T0492)V44.CB) [> -999.000 = 6.500 < 8.500] w=0.580 to nn1000 # Constraint # added constraint: bonus constraint((T0492)G36.CA, (T0492)E71.CB) [> -999.000 = 6.500 < 8.500] w=0.578 to nn1000 # Constraint # added constraint: bonus constraint((T0492)C37.CB, (T0492)Q52.CB) [> -999.000 = 6.500 < 8.500] w=0.579 to nn1000 # Constraint # added constraint: bonus constraint((T0492)Y40.CB, (T0492)L60.CB) [> -999.000 = 6.500 < 8.500] w=0.579 to nn1000 # Constraint # added constraint: bonus constraint((T0492)D6.CB, (T0492)K43.CB) [> -999.000 = 6.500 < 8.500] w=0.577 to nn1000 # Constraint # added constraint: bonus constraint((T0492)G32.CA, (T0492)K43.CB) [> -999.000 = 6.500 < 8.500] w=0.578 to nn1000 # Constraint # added constraint: bonus constraint((T0492)P46.CB, (T0492)L60.CB) [> -999.000 = 6.500 < 8.500] w=0.578 to nn1000 # Constraint # added constraint: bonus constraint((T0492)A7.CB, (T0492)I33.CB) [> -999.000 = 6.500 < 8.500] w=0.576 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L24.CB, (T0492)Q52.CB) [> -999.000 = 6.500 < 8.500] w=0.577 to nn1000 # Constraint # added constraint: bonus constraint((T0492)C37.CB, (T0492)A67.CB) [> -999.000 = 6.500 < 8.500] w=0.577 to nn1000 # Constraint # added constraint: bonus constraint((T0492)G57.CA, (T0492)A67.CB) [> -999.000 = 6.500 < 8.500] w=0.577 to nn1000 # Constraint # added constraint: bonus constraint((T0492)R5.CB, (T0492)T34.CB) [> -999.000 = 6.500 < 8.500] w=0.574 to nn1000 # Constraint # added constraint: bonus constraint((T0492)A7.CB, (T0492)I53.CB) [> -999.000 = 6.500 < 8.500] w=0.574 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L18.CB, (T0492)E71.CB) [> -999.000 = 6.500 < 8.500] w=0.575 to nn1000 # Constraint # added constraint: bonus constraint((T0492)E38.CB, (T0492)A67.CB) [> -999.000 = 6.500 < 8.500] w=0.574 to nn1000 # Constraint # added constraint: bonus constraint((T0492)D49.CB, (T0492)A67.CB) [> -999.000 = 6.500 < 8.500] w=0.575 to nn1000 # Constraint # added constraint: bonus constraint((T0492)K8.CB, (T0492)V44.CB) [> -999.000 = 6.500 < 8.500] w=0.574 to nn1000 # Constraint # added constraint: bonus constraint((T0492)K25.CB, (T0492)K43.CB) [> -999.000 = 6.500 < 8.500] w=0.573 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L4.CB, (T0492)M29.CB) [> -999.000 = 6.500 < 8.500] w=0.572 to nn1000 # Constraint # added constraint: bonus constraint((T0492)A7.CB, (T0492)R27.CB) [> -999.000 = 6.500 < 8.500] w=0.573 to nn1000 # Constraint # added constraint: bonus constraint((T0492)A7.CB, (T0492)G32.CA) [> -999.000 = 6.500 < 8.500] w=0.573 to nn1000 # Constraint # added constraint: bonus constraint((T0492)R27.CB, (T0492)L62.CB) [> -999.000 = 6.500 < 8.500] w=0.573 to nn1000 # Constraint # added constraint: bonus constraint((T0492)G32.CA, (T0492)I51.CB) [> -999.000 = 6.500 < 8.500] w=0.572 to nn1000 # Constraint # added constraint: bonus constraint((T0492)T34.CB, (T0492)L62.CB) [> -999.000 = 6.500 < 8.500] w=0.573 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L47.CB, (T0492)M69.CB) [> -999.000 = 6.500 < 8.500] w=0.573 to nn1000 # Constraint # added constraint: bonus constraint((T0492)N54.CB, (T0492)A67.CB) [> -999.000 = 6.500 < 8.500] w=0.573 to nn1000 # Constraint # added constraint: bonus constraint((T0492)C9.CB, (T0492)V55.CB) [> -999.000 = 6.500 < 8.500] w=0.571 to nn1000 # Constraint # added constraint: bonus constraint((T0492)A7.CB, (T0492)V44.CB) [> -999.000 = 6.500 < 8.500] w=0.570 to nn1000 # Constraint # added constraint: bonus constraint((T0492)K14.CB, (T0492)I33.CB) [> -999.000 = 6.500 < 8.500] w=0.570 to nn1000 # Constraint # added constraint: bonus constraint((T0492)G20.CA, (T0492)V55.CB) [> -999.000 = 6.500 < 8.500] w=0.571 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I28.CB, (T0492)A45.CB) [> -999.000 = 6.500 < 8.500] w=0.571 to nn1000 # Constraint # added constraint: bonus constraint((T0492)G36.CA, (T0492)G48.CA) [> -999.000 = 6.500 < 8.500] w=0.571 to nn1000 # Constraint # added constraint: bonus constraint((T0492)A45.CB, (T0492)K64.CB) [> -999.000 = 6.500 < 8.500] w=0.571 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V16.CB, (T0492)A45.CB) [> -999.000 = 6.500 < 8.500] w=0.569 to nn1000 # Constraint # added constraint: bonus constraint((T0492)M31.CB, (T0492)R63.CB) [> -999.000 = 6.500 < 8.500] w=0.569 to nn1000 # Constraint # added constraint: bonus constraint((T0492)L24.CB, (T0492)L62.CB) [> -999.000 = 6.500 < 8.500] w=0.567 to nn1000 # Constraint # added constraint: bonus constraint((T0492)R27.CB, (T0492)P50.CB) [> -999.000 = 6.500 < 8.500] w=0.568 to nn1000 # Constraint # added constraint: bonus constraint((T0492)G32.CA, (T0492)L47.CB) [> -999.000 = 6.500 < 8.500] w=0.568 to nn1000 # Constraint # added constraint: bonus constraint((T0492)R35.CB, (T0492)V55.CB) [> -999.000 = 6.500 < 8.500] w=0.567 to nn1000 # Constraint # added constraint: bonus constraint((T0492)I51.CB, (T0492)E68.CB) [> -999.000 = 6.500 < 8.500] w=0.568 to nn1000 # Constraint # added constraint: bonus constraint((T0492)N54.CB, (T0492)K64.CB) [> -999.000 = 6.500 < 8.500] w=0.566 to nn1000 # Constraint # added constraint: bonus constraint((T0492)Y58.CB, (T0492)E68.CB) [> -999.000 = 6.500 < 8.500] w=0.566 to nn1000 # Constraint # added constraint: bonus constraint((T0492)H19.CB, (T0492)E59.CB) [> -999.000 = 6.500 < 8.500] w=0.565 to nn1000 # Constraint # added constraint: bonus constraint((T0492)S3.CB, (T0492)L24.CB) [> -999.000 = 6.500 < 8.500] w=0.564 to nn1000 # Constraint # added constraint: bonus constraint((T0492)R5.CB, (T0492)Y58.CB) [> -999.000 = 6.500 < 8.500] w=0.565 to nn1000 # Constraint # added constraint: bonus constraint((T0492)C37.CB, (T0492)M69.CB) [> -999.000 = 6.500 < 8.500] w=0.564 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V44.CB, (T0492)R63.CB) [> -999.000 = 6.500 < 8.500] w=0.565 to nn1000 # Constraint # added constraint: bonus constraint((T0492)G10.CA, (T0492)N54.CB) [> -999.000 = 6.500 < 8.500] w=0.563 to nn1000 # Constraint # added constraint: bonus constraint((T0492)K17.CB, (T0492)R56.CB) [> -999.000 = 6.500 < 8.500] w=0.563 to nn1000 # Constraint # added constraint: bonus constraint((T0492)K17.CB, (T0492)Y58.CB) [> -999.000 = 6.500 < 8.500] w=0.562 to nn1000 # Constraint # added constraint: bonus constraint((T0492)V44.CB, (T0492)A66.CB) [> -999.000 = 6.500 < 8.500] w=0.563 to nn1000 # command:# SetCost created cost = # ) # command:CPU_time= 9.169 sec, elapsed time= 24.221 sec. # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp8/T0492 # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/T0492model1.ts-submitted or /projects/compbio/experiments/protein-predict/casp8/T0492model1.ts-submitted.gz for input Trying model1.ts-submitted # ReadConformPDB reading from PDB file model1.ts-submitted looking for model 1 # command:# fraction of real conformation used = 1.000 # GDT_score = -70.890 # GDT_score(maxd=8.000,maxw=2.900)= -74.410 # GDT_score(maxd=8.000,maxw=3.200)= -70.254 # GDT_score(maxd=8.000,maxw=3.500)= -66.188 # GDT_score(maxd=10.000,maxw=3.800)= -69.321 # GDT_score(maxd=10.000,maxw=4.000)= -66.799 # GDT_score(maxd=10.000,maxw=4.200)= -64.448 # GDT_score(maxd=12.000,maxw=4.300)= -68.409 # GDT_score(maxd=12.000,maxw=4.500)= -66.131 # GDT_score(maxd=12.000,maxw=4.700)= -64.014 # GDT_score(maxd=14.000,maxw=5.200)= -62.908 # GDT_score(maxd=14.000,maxw=5.500)= -60.070 # command:# Prefix for output files set to # command:superimposing iter= 0 total_weight= 859 rmsd (weighted)= 3.28218 (unweighted)= 3.50739 superimposing iter= 1 total_weight= 1959.47 rmsd (weighted)= 1.67231 (unweighted)= 3.52583 superimposing iter= 2 total_weight= 870.743 rmsd (weighted)= 1.32505 (unweighted)= 3.55298 superimposing iter= 3 total_weight= 658.212 rmsd (weighted)= 1.2148 (unweighted)= 3.57737 superimposing iter= 4 total_weight= 601.075 rmsd (weighted)= 1.16765 (unweighted)= 3.59604 superimposing iter= 5 total_weight= 580.365 rmsd (weighted)= 1.14316 (unweighted)= 3.60903 # command:# Prefix for output files set to decoys/ # command:# request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1620978125.pdb -s /var/tmp/to_scwrl_1620978125.seq -o /var/tmp/from_scwrl_1620978125.pdb > /var/tmp/scwrl_1620978125.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1620978125.pdb # conformation set from SCWRL output # command:# naming current conformation model1-scwrl # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/T0492model2.ts-submitted or /projects/compbio/experiments/protein-predict/casp8/T0492model2.ts-submitted.gz for input Trying model2.ts-submitted # ReadConformPDB reading from PDB file model2.ts-submitted looking for model 1 # choosing archetypes in rotamer library # Found a chain break before 49 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1.000 # GDT_score = -67.808 # GDT_score(maxd=8.000,maxw=2.900)= -72.241 # GDT_score(maxd=8.000,maxw=3.200)= -67.664 # GDT_score(maxd=8.000,maxw=3.500)= -63.453 # GDT_score(maxd=10.000,maxw=3.800)= -66.812 # GDT_score(maxd=10.000,maxw=4.000)= -64.308 # GDT_score(maxd=10.000,maxw=4.200)= -62.029 # GDT_score(maxd=12.000,maxw=4.300)= -66.080 # GDT_score(maxd=12.000,maxw=4.500)= -63.874 # GDT_score(maxd=12.000,maxw=4.700)= -61.808 # GDT_score(maxd=14.000,maxw=5.200)= -60.873 # GDT_score(maxd=14.000,maxw=5.500)= -58.258 # command:# request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_549611462.pdb -s /var/tmp/to_scwrl_549611462.seq -o /var/tmp/from_scwrl_549611462.pdb > /var/tmp/scwrl_549611462.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_549611462.pdb # conformation set from SCWRL output # command:# naming current conformation model2-scwrl # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/T0492model3.ts-submitted or /projects/compbio/experiments/protein-predict/casp8/T0492model3.ts-submitted.gz for input Trying model3.ts-submitted # ReadConformPDB reading from PDB file model3.ts-submitted looking for model 1 # command:# fraction of real conformation used = 1.000 # GDT_score = -67.123 # GDT_score(maxd=8.000,maxw=2.900)= -70.629 # GDT_score(maxd=8.000,maxw=3.200)= -66.146 # GDT_score(maxd=8.000,maxw=3.500)= -62.178 # GDT_score(maxd=10.000,maxw=3.800)= -65.638 # GDT_score(maxd=10.000,maxw=4.000)= -63.183 # GDT_score(maxd=10.000,maxw=4.200)= -60.892 # GDT_score(maxd=12.000,maxw=4.300)= -65.022 # GDT_score(maxd=12.000,maxw=4.500)= -62.801 # GDT_score(maxd=12.000,maxw=4.700)= -60.756 # GDT_score(maxd=14.000,maxw=5.200)= -59.922 # GDT_score(maxd=14.000,maxw=5.500)= -57.326 # command:# request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1424355201.pdb -s /var/tmp/to_scwrl_1424355201.seq -o /var/tmp/from_scwrl_1424355201.pdb > /var/tmp/scwrl_1424355201.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1424355201.pdb # conformation set from SCWRL output # command:# naming current conformation model3-scwrl # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/T0492model4.ts-submitted or /projects/compbio/experiments/protein-predict/casp8/T0492model4.ts-submitted.gz for input Trying model4.ts-submitted # ReadConformPDB reading from PDB file model4.ts-submitted looking for model 1 # command:# fraction of real conformation used = 1.000 # GDT_score = -76.027 # GDT_score(maxd=8.000,maxw=2.900)= -80.429 # GDT_score(maxd=8.000,maxw=3.200)= -76.423 # GDT_score(maxd=8.000,maxw=3.500)= -72.444 # GDT_score(maxd=10.000,maxw=3.800)= -75.038 # GDT_score(maxd=10.000,maxw=4.000)= -72.641 # GDT_score(maxd=10.000,maxw=4.200)= -70.273 # GDT_score(maxd=12.000,maxw=4.300)= -73.902 # GDT_score(maxd=12.000,maxw=4.500)= -71.611 # GDT_score(maxd=12.000,maxw=4.700)= -69.403 # GDT_score(maxd=14.000,maxw=5.200)= -67.851 # GDT_score(maxd=14.000,maxw=5.500)= -64.859 # command:# request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_725745521.pdb -s /var/tmp/to_scwrl_725745521.seq -o /var/tmp/from_scwrl_725745521.pdb > /var/tmp/scwrl_725745521.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_725745521.pdb # conformation set from SCWRL output # command:# naming current conformation model4-scwrl # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/T0492model5.ts-submitted or /projects/compbio/experiments/protein-predict/casp8/T0492model5.ts-submitted.gz for input Trying model5.ts-submitted # ReadConformPDB reading from PDB file model5.ts-submitted looking for model 1 # Found a chain break before 48 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1.000 # GDT_score = -66.781 # GDT_score(maxd=8.000,maxw=2.900)= -70.212 # GDT_score(maxd=8.000,maxw=3.200)= -66.075 # GDT_score(maxd=8.000,maxw=3.500)= -62.472 # GDT_score(maxd=10.000,maxw=3.800)= -65.878 # GDT_score(maxd=10.000,maxw=4.000)= -63.726 # GDT_score(maxd=10.000,maxw=4.200)= -61.687 # GDT_score(maxd=12.000,maxw=4.300)= -65.585 # GDT_score(maxd=12.000,maxw=4.500)= -63.586 # GDT_score(maxd=12.000,maxw=4.700)= -61.668 # GDT_score(maxd=14.000,maxw=5.200)= -60.834 # GDT_score(maxd=14.000,maxw=5.500)= -58.154 # command:# request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_221800546.pdb -s /var/tmp/to_scwrl_221800546.seq -o /var/tmp/from_scwrl_221800546.pdb > /var/tmp/scwrl_221800546.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_221800546.pdb # conformation set from SCWRL output # command:# naming current conformation model5-scwrl # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp8/T0492/decoys/ # command:# ReadConformPDB reading from PDB file T0492.try1-opt2.pdb looking for model 1 # Found a chain break before 58 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1.000 # GDT_score = -68.151 # GDT_score(maxd=8.000,maxw=2.900)= -70.968 # GDT_score(maxd=8.000,maxw=3.200)= -66.645 # GDT_score(maxd=8.000,maxw=3.500)= -62.520 # GDT_score(maxd=10.000,maxw=3.800)= -65.953 # GDT_score(maxd=10.000,maxw=4.000)= -63.487 # GDT_score(maxd=10.000,maxw=4.200)= -61.227 # GDT_score(maxd=12.000,maxw=4.300)= -65.316 # GDT_score(maxd=12.000,maxw=4.500)= -63.114 # GDT_score(maxd=12.000,maxw=4.700)= -61.034 # GDT_score(maxd=14.000,maxw=5.200)= -60.125 # GDT_score(maxd=14.000,maxw=5.500)= -57.505 # command:# Prefix for output files set to # command:superimposing iter= 0 total_weight= 859 rmsd (weighted)= 3.55194 (unweighted)= 3.79142 superimposing iter= 1 total_weight= 1698.94 rmsd (weighted)= 1.96289 (unweighted)= 3.8228 superimposing iter= 2 total_weight= 822.788 rmsd (weighted)= 1.59781 (unweighted)= 3.86844 superimposing iter= 3 total_weight= 649.476 rmsd (weighted)= 1.47863 (unweighted)= 3.90368 superimposing iter= 4 total_weight= 591.132 rmsd (weighted)= 1.43758 (unweighted)= 3.93271 superimposing iter= 5 total_weight= 582.481 rmsd (weighted)= 1.40977 (unweighted)= 3.95586 # command:# Prefix for output files set to decoys/ # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp8/T0492 # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/T0492T0492.undertaker-align.pdb or /projects/compbio/experiments/protein-predict/casp8/T0492T0492.undertaker-align.pdb.gz for input Trying T0492.undertaker-align.pdb # ReadConformPDB reading from PDB file T0492.undertaker-align.pdb looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # command:# naming current conformation align1 # command:# fraction of real conformation used = 0.890 # GDT_score = -69.863 # GDT_score(maxd=8.000,maxw=2.900)= -73.964 # GDT_score(maxd=8.000,maxw=3.200)= -70.335 # GDT_score(maxd=8.000,maxw=3.500)= -66.724 # GDT_score(maxd=10.000,maxw=3.800)= -68.804 # GDT_score(maxd=10.000,maxw=4.000)= -66.592 # GDT_score(maxd=10.000,maxw=4.200)= -64.364 # GDT_score(maxd=12.000,maxw=4.300)= -67.581 # GDT_score(maxd=12.000,maxw=4.500)= -65.435 # GDT_score(maxd=12.000,maxw=4.700)= -63.359 # GDT_score(maxd=14.000,maxw=5.200)= -61.753 # GDT_score(maxd=14.000,maxw=5.500)= -58.907 # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/T0492T0492.undertaker-align.pdb or /projects/compbio/experiments/protein-predict/casp8/T0492T0492.undertaker-align.pdb.gz for input Trying T0492.undertaker-align.pdb # ReadConformPDB reading from PDB file T0492.undertaker-align.pdb looking for model 2 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # command:# naming current conformation align2 # command:# fraction of real conformation used = 0.932 # GDT_score = -65.411 # GDT_score(maxd=8.000,maxw=2.900)= -70.291 # GDT_score(maxd=8.000,maxw=3.200)= -65.997 # GDT_score(maxd=8.000,maxw=3.500)= -62.207 # GDT_score(maxd=10.000,maxw=3.800)= -65.074 # GDT_score(maxd=10.000,maxw=4.000)= -62.761 # GDT_score(maxd=10.000,maxw=4.200)= -60.504 # GDT_score(maxd=12.000,maxw=4.300)= -64.222 # GDT_score(maxd=12.000,maxw=4.500)= -62.018 # GDT_score(maxd=12.000,maxw=4.700)= -59.884 # GDT_score(maxd=14.000,maxw=5.200)= -58.643 # GDT_score(maxd=14.000,maxw=5.500)= -55.899 # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/T0492T0492.undertaker-align.pdb or /projects/compbio/experiments/protein-predict/casp8/T0492T0492.undertaker-align.pdb.gz for input Trying T0492.undertaker-align.pdb # ReadConformPDB reading from PDB file T0492.undertaker-align.pdb looking for model 3 WARNING: atoms too close: (T0492)V44.C and (T0492)P46.C only 0 apart, perturbing (T0492)P46.C WARNING: atoms too close: (T0492)A45.N and (T0492)L47.N only 0 apart, perturbing (T0492)A45.N WARNING: atoms too close: (T0492)A45.CA and (T0492)L47.CA only 0 apart, perturbing (T0492)A45.CA # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # copying to AlignedFragments data structure # command:# naming current conformation align3 # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/T0492T0492.undertaker-align.pdb or /projects/compbio/experiments/protein-predict/casp8/T0492T0492.undertaker-align.pdb.gz for input Trying T0492.undertaker-align.pdb # ReadConformPDB reading from PDB file T0492.undertaker-align.pdb looking for model 4 WARNING: atoms too close: (T0492)V44.C and (T0492)L47.C only 0 apart, perturbing (T0492)L47.C WARNING: atoms too close: (T0492)A45.N and (T0492)G48.N only 0 apart, perturbing (T0492)A45.N WARNING: atoms too close: (T0492)A45.CA and (T0492)G48.CA only 0 apart, perturbing (T0492)A45.CA # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # command:# naming current conformation align4 # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp8/T0492T0492.undertaker-align.pdb or /projects/compbio/experiments/protein-predict/casp8/T0492T0492.undertaker-align.pdb.gz for input Trying T0492.undertaker-align.pdb # ReadConformPDB reading from PDB file T0492.undertaker-align.pdb looking for model 5 WARNING: atoms too close: (T0492)G36.C and (T0492)C37.C only 0 apart, perturbing (T0492)C37.C WARNING: atoms too close: (T0492)C37.N and (T0492)E38.N only 0 apart, perturbing (T0492)C37.N WARNING: atoms too close: (T0492)C37.CA and (T0492)E38.CA only 0 apart, perturbing (T0492)C37.CA # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # command:# naming current conformation align5 # command:# Prefix for input files set to decoys/ # command:# reading script from file read-pdb+servers.under # ReadConformPDB reading from PDB file ../model1.ts-submitted looking for model 1 # ReadConformPDB reading from PDB file ../model2.ts-submitted looking for model 1 # Found a chain break before 49 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model3.ts-submitted looking for model 1 # ReadConformPDB reading from PDB file ../model4.ts-submitted looking for model 1 # ReadConformPDB reading from PDB file ../model5.ts-submitted looking for model 1 # Found a chain break before 48 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0492.MQAC1-opt1-scwrl.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file T0492.MQAC1-opt1.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file T0492.MQAC1-opt2.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file T0492.MQAC1-opt3.gromacs0.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file T0492.MQAC1-opt3.gromacs0.repack-nonPC.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file T0492.MQAC1-opt3.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file T0492.MQAC1-opt3.repack-nonPC.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file T0492.MQAC4-opt1-scwrl.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file T0492.MQAC4-opt1.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file T0492.MQAC4-opt2.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file T0492.MQAC4-opt3.gromacs0.pdb.gz looking for model 1 # Found a chain break before 47 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0492.MQAC4-opt3.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 47 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0492.MQAC4-opt3.pdb.gz looking for model 1 # Found a chain break before 48 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0492.MQAC4-opt3.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 48 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0492.MQAU1-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 48 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0492.MQAU1-opt1.pdb.gz looking for model 1 # Found a chain break before 48 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0492.MQAU1-opt2.pdb.gz looking for model 1 # Found a chain break before 48 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0492.MQAU1-opt3.gromacs0.pdb.gz looking for model 1 # Found a chain break before 21 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0492.MQAU1-opt3.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 21 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0492.MQAU1-opt3.pdb.gz looking for model 1 # Found a chain break before 48 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0492.MQAU1-opt3.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 48 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0492.MQAU4-opt1-scwrl.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file T0492.MQAU4-opt1.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file T0492.MQAU4-opt2.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file T0492.MQAU4-opt3.gromacs0.pdb.gz looking for model 1 # Found a chain break before 47 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0492.MQAU4-opt3.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 47 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0492.MQAU4-opt3.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file T0492.MQAU4-opt3.repack-nonPC.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file T0492.MQAX1-opt1-scwrl.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file T0492.MQAX1-opt1.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file T0492.MQAX1-opt2.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file T0492.MQAX1-opt3.gromacs0.pdb.gz looking for model 1 # Found a chain break before 48 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0492.MQAX1-opt3.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 48 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0492.MQAX1-opt3.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file T0492.MQAX1-opt3.repack-nonPC.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file T0492.MQAX4-opt1-scwrl.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file T0492.MQAX4-opt1.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file T0492.MQAX4-opt2.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file T0492.MQAX4-opt3.gromacs0.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file T0492.MQAX4-opt3.gromacs0.repack-nonPC.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file T0492.MQAX4-opt3.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file T0492.MQAX4-opt3.repack-nonPC.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file T0492.try1-init.pdb.gz looking for model 1 # Found a chain break before 58 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0492.try1-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 58 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0492.try1-opt1.pdb.gz looking for model 1 # Found a chain break before 58 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0492.try1-opt2.pdb.gz looking for model 1 # Found a chain break before 58 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0492.try1-opt3.gromacs0.pdb.gz looking for model 1 # Found a chain break before 56 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0492.try1-opt3.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 56 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0492.try1-opt3.pdb.gz looking for model 1 # Found a chain break before 49 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0492.try1-opt3.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 49 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0492.try2-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 49 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0492.try2-opt1.pdb.gz looking for model 1 # Found a chain break before 49 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0492.try2-opt2.pdb.gz looking for model 1 # Found a chain break before 49 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0492.try2-opt3.gromacs0.pdb.gz looking for model 1 # Found a chain break before 49 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0492.try2-opt3.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 49 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0492.try2-opt3.pdb.gz looking for model 1 # Found a chain break before 49 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0492.try2-opt3.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 49 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0492.try3-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 49 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0492.try3-opt1.pdb.gz looking for model 1 # Found a chain break before 49 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0492.try3-opt2.pdb.gz looking for model 1 # Found a chain break before 49 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0492.try3-opt3.gromacs0.pdb.gz looking for model 1 # Found a chain break before 49 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0492.try3-opt3.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 49 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0492.try3-opt3.pdb.gz looking for model 1 # Found a chain break before 49 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0492.try3-opt3.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 49 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0492.try4-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 49 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0492.try4-opt1.pdb.gz looking for model 1 # Found a chain break before 49 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0492.try4-opt2.pdb.gz looking for model 1 # Found a chain break before 49 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0492.try4-opt3.gromacs0.pdb.gz looking for model 1 # Found a chain break before 49 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0492.try4-opt3.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 49 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0492.try4-opt3.pdb.gz looking for model 1 # Found a chain break before 49 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0492.try4-opt3.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 49 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0492.try5-opt1-scwrl.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file T0492.try5-opt1.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file T0492.try5-opt2.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file T0492.try5-opt3.gromacs0.pdb.gz looking for model 1 # Found a chain break before 47 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0492.try5-opt3.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 47 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0492.try5-opt3.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file T0492.try5-opt3.repack-nonPC.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_AEP_TS1 looking for model 1 # Found a chain break before 71 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_850271600.pdb -s /var/tmp/to_scwrl_850271600.seq -o /var/tmp/from_scwrl_850271600.pdb > /var/tmp/scwrl_850271600.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_850271600.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_AEP_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_AEP_TS2 looking for model 1 # Found a chain break before 71 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1443289489.pdb -s /var/tmp/to_scwrl_1443289489.seq -o /var/tmp/from_scwrl_1443289489.pdb > /var/tmp/scwrl_1443289489.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1443289489.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_AEP_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_AEP_TS3 looking for model 1 # Found a chain break before 71 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_944041147.pdb -s /var/tmp/to_scwrl_944041147.seq -o /var/tmp/from_scwrl_944041147.pdb > /var/tmp/scwrl_944041147.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_944041147.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_AEP_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_AEP_TS4 looking for model 1 # Found a chain break before 71 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1072072146.pdb -s /var/tmp/to_scwrl_1072072146.seq -o /var/tmp/from_scwrl_1072072146.pdb > /var/tmp/scwrl_1072072146.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1072072146.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_AEP_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_AEP_TS5 looking for model 1 # Found a chain break before 71 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_311436714.pdb -s /var/tmp/to_scwrl_311436714.seq -o /var/tmp/from_scwrl_311436714.pdb > /var/tmp/scwrl_311436714.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_311436714.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_AEP_TS5-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_V3_TS1 looking for model 1 # Found a chain break before 71 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_504686202.pdb -s /var/tmp/to_scwrl_504686202.seq -o /var/tmp/from_scwrl_504686202.pdb > /var/tmp/scwrl_504686202.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_504686202.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_V3_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_V3_TS2 looking for model 1 # Found a chain break before 71 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_858941179.pdb -s /var/tmp/to_scwrl_858941179.seq -o /var/tmp/from_scwrl_858941179.pdb > /var/tmp/scwrl_858941179.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_858941179.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_V3_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_V3_TS3 looking for model 1 # Found a chain break before 71 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1110758840.pdb -s /var/tmp/to_scwrl_1110758840.seq -o /var/tmp/from_scwrl_1110758840.pdb > /var/tmp/scwrl_1110758840.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1110758840.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_V3_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_V3_TS4 looking for model 1 # Found a chain break before 71 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_711460424.pdb -s /var/tmp/to_scwrl_711460424.seq -o /var/tmp/from_scwrl_711460424.pdb > /var/tmp/scwrl_711460424.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_711460424.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_V3_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_V3_TS5 looking for model 1 # Found a chain break before 71 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1455902430.pdb -s /var/tmp/to_scwrl_1455902430.seq -o /var/tmp/from_scwrl_1455902430.pdb > /var/tmp/scwrl_1455902430.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1455902430.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_V3_TS5-scwrl # ReadConformPDB reading from PDB file servers/3DShot2_TS1 looking for model 1 # Found a chain break before 72 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1375146751.pdb -s /var/tmp/to_scwrl_1375146751.seq -o /var/tmp/from_scwrl_1375146751.pdb > /var/tmp/scwrl_1375146751.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1375146751.pdb # conformation set from SCWRL output # naming current conformation 3DShot2_TS1-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS1 looking for model 1 # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1935729809.pdb -s /var/tmp/to_scwrl_1935729809.seq -o /var/tmp/from_scwrl_1935729809.pdb > /var/tmp/scwrl_1935729809.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1935729809.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS2 looking for model 1 # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1896926458.pdb -s /var/tmp/to_scwrl_1896926458.seq -o /var/tmp/from_scwrl_1896926458.pdb > /var/tmp/scwrl_1896926458.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1896926458.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS3 looking for model 1 # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_963850593.pdb -s /var/tmp/to_scwrl_963850593.seq -o /var/tmp/from_scwrl_963850593.pdb > /var/tmp/scwrl_963850593.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_963850593.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS4 looking for model 1 # Found a chain break before 6 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_208176421.pdb -s /var/tmp/to_scwrl_208176421.seq -o /var/tmp/from_scwrl_208176421.pdb > /var/tmp/scwrl_208176421.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_208176421.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS5 looking for model 1 # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1460508438.pdb -s /var/tmp/to_scwrl_1460508438.seq -o /var/tmp/from_scwrl_1460508438.pdb > /var/tmp/scwrl_1460508438.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1460508438.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/ACOMPMOD_TS1 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_749698721.pdb -s /var/tmp/to_scwrl_749698721.seq -o /var/tmp/from_scwrl_749698721.pdb > /var/tmp/scwrl_749698721.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_749698721.pdb # conformation set from SCWRL output # naming current conformation ACOMPMOD_TS1-scwrl # ReadConformPDB reading from PDB file servers/ACOMPMOD_TS2 looking for model 1 # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_322199033.pdb -s /var/tmp/to_scwrl_322199033.seq -o /var/tmp/from_scwrl_322199033.pdb > /var/tmp/scwrl_322199033.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_322199033.pdb # conformation set from SCWRL output # naming current conformation ACOMPMOD_TS2-scwrl # ReadConformPDB reading from PDB file servers/ACOMPMOD_TS3 looking for model 1 # Found a chain break before 25 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1474164621.pdb -s /var/tmp/to_scwrl_1474164621.seq -o /var/tmp/from_scwrl_1474164621.pdb > /var/tmp/scwrl_1474164621.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1474164621.pdb # conformation set from SCWRL output # naming current conformation ACOMPMOD_TS3-scwrl # ReadConformPDB reading from PDB file servers/ACOMPMOD_TS4 looking for model 1 # Found a chain break before 48 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_2061112568.pdb -s /var/tmp/to_scwrl_2061112568.seq -o /var/tmp/from_scwrl_2061112568.pdb > /var/tmp/scwrl_2061112568.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2061112568.pdb # conformation set from SCWRL output # naming current conformation ACOMPMOD_TS4-scwrl # ReadConformPDB reading from PDB file servers/ACOMPMOD_TS5 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_2108416208.pdb -s /var/tmp/to_scwrl_2108416208.seq -o /var/tmp/from_scwrl_2108416208.pdb > /var/tmp/scwrl_2108416208.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2108416208.pdb # conformation set from SCWRL output # naming current conformation ACOMPMOD_TS5-scwrl # ReadConformPDB reading from PDB file servers/BAKER-ROBETTA_TS1 looking for model 1 # Found a chain break before 19 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_818088280.pdb -s /var/tmp/to_scwrl_818088280.seq -o /var/tmp/from_scwrl_818088280.pdb > /var/tmp/scwrl_818088280.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_818088280.pdb # conformation set from SCWRL output # naming current conformation BAKER-ROBETTA_TS1-scwrl # ReadConformPDB reading from PDB file servers/BAKER-ROBETTA_TS2 looking for model 1 # Found a chain break before 22 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1798734302.pdb -s /var/tmp/to_scwrl_1798734302.seq -o /var/tmp/from_scwrl_1798734302.pdb > /var/tmp/scwrl_1798734302.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1798734302.pdb # conformation set from SCWRL output # naming current conformation BAKER-ROBETTA_TS2-scwrl # ReadConformPDB reading from PDB file servers/BAKER-ROBETTA_TS3 looking for model 1 # Found a chain break before 20 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_766018166.pdb -s /var/tmp/to_scwrl_766018166.seq -o /var/tmp/from_scwrl_766018166.pdb > /var/tmp/scwrl_766018166.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_766018166.pdb # conformation set from SCWRL output # naming current conformation BAKER-ROBETTA_TS3-scwrl # ReadConformPDB reading from PDB file servers/BAKER-ROBETTA_TS4 looking for model 1 # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_794227193.pdb -s /var/tmp/to_scwrl_794227193.seq -o /var/tmp/from_scwrl_794227193.pdb > /var/tmp/scwrl_794227193.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_794227193.pdb # conformation set from SCWRL output # naming current conformation BAKER-ROBETTA_TS4-scwrl # ReadConformPDB reading from PDB file servers/BAKER-ROBETTA_TS5 looking for model 1 # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_85193523.pdb -s /var/tmp/to_scwrl_85193523.seq -o /var/tmp/from_scwrl_85193523.pdb > /var/tmp/scwrl_85193523.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_85193523.pdb # conformation set from SCWRL output # naming current conformation BAKER-ROBETTA_TS5-scwrl # ReadConformPDB reading from PDB file servers/BioSerf_TS1 looking for model 1 # Found a chain break before 49 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_39845369.pdb -s /var/tmp/to_scwrl_39845369.seq -o /var/tmp/from_scwrl_39845369.pdb > /var/tmp/scwrl_39845369.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_39845369.pdb # conformation set from SCWRL output # naming current conformation BioSerf_TS1-scwrl # ReadConformPDB reading from PDB file servers/COMA-M_TS1 looking for model 1 # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1539028341.pdb -s /var/tmp/to_scwrl_1539028341.seq -o /var/tmp/from_scwrl_1539028341.pdb > /var/tmp/scwrl_1539028341.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1539028341.pdb # conformation set from SCWRL output # naming current conformation COMA-M_TS1-scwrl # ReadConformPDB reading from PDB file servers/COMA-M_TS2 looking for model 1 # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_385853661.pdb -s /var/tmp/to_scwrl_385853661.seq -o /var/tmp/from_scwrl_385853661.pdb > /var/tmp/scwrl_385853661.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_385853661.pdb # conformation set from SCWRL output # naming current conformation COMA-M_TS2-scwrl # ReadConformPDB reading from PDB file servers/COMA-M_TS3 looking for model 1 # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_58779658.pdb -s /var/tmp/to_scwrl_58779658.seq -o /var/tmp/from_scwrl_58779658.pdb > /var/tmp/scwrl_58779658.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_58779658.pdb # conformation set from SCWRL output # naming current conformation COMA-M_TS3-scwrl # ReadConformPDB reading from PDB file servers/COMA-M_TS4 looking for model 1 # Found a chain break before 48 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1757323967.pdb -s /var/tmp/to_scwrl_1757323967.seq -o /var/tmp/from_scwrl_1757323967.pdb > /var/tmp/scwrl_1757323967.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1757323967.pdb # conformation set from SCWRL output # naming current conformation COMA-M_TS4-scwrl # ReadConformPDB reading from PDB file servers/COMA-M_TS5 looking for model 1 # Found a chain break before 48 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1236125260.pdb -s /var/tmp/to_scwrl_1236125260.seq -o /var/tmp/from_scwrl_1236125260.pdb > /var/tmp/scwrl_1236125260.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1236125260.pdb # conformation set from SCWRL output # naming current conformation COMA-M_TS5-scwrl # ReadConformPDB reading from PDB file servers/COMA_TS1 looking for model 1 # Found a chain break before 15 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1502069147.pdb -s /var/tmp/to_scwrl_1502069147.seq -o /var/tmp/from_scwrl_1502069147.pdb > /var/tmp/scwrl_1502069147.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1502069147.pdb # conformation set from SCWRL output # naming current conformation COMA_TS1-scwrl # ReadConformPDB reading from PDB file servers/COMA_TS2 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_553881468.pdb -s /var/tmp/to_scwrl_553881468.seq -o /var/tmp/from_scwrl_553881468.pdb > /var/tmp/scwrl_553881468.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_553881468.pdb # conformation set from SCWRL output # naming current conformation COMA_TS2-scwrl # ReadConformPDB reading from PDB file servers/COMA_TS3 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_160713759.pdb -s /var/tmp/to_scwrl_160713759.seq -o /var/tmp/from_scwrl_160713759.pdb > /var/tmp/scwrl_160713759.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_160713759.pdb # conformation set from SCWRL output # naming current conformation COMA_TS3-scwrl # ReadConformPDB reading from PDB file servers/COMA_TS4 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1813505862.pdb -s /var/tmp/to_scwrl_1813505862.seq -o /var/tmp/from_scwrl_1813505862.pdb > /var/tmp/scwrl_1813505862.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1813505862.pdb # conformation set from SCWRL output # naming current conformation COMA_TS4-scwrl # ReadConformPDB reading from PDB file servers/COMA_TS5 looking for model 1 # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1058567670.pdb -s /var/tmp/to_scwrl_1058567670.seq -o /var/tmp/from_scwrl_1058567670.pdb > /var/tmp/scwrl_1058567670.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1058567670.pdb # conformation set from SCWRL output # naming current conformation COMA_TS5-scwrl # ReadConformPDB reading from PDB file servers/CpHModels_TS1 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1019654938.pdb -s /var/tmp/to_scwrl_1019654938.seq -o /var/tmp/from_scwrl_1019654938.pdb > /var/tmp/scwrl_1019654938.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1019654938.pdb # conformation set from SCWRL output # naming current conformation CpHModels_TS1-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS1 looking for model 1 # Found a chain break before 72 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_776781056.pdb -s /var/tmp/to_scwrl_776781056.seq -o /var/tmp/from_scwrl_776781056.pdb > /var/tmp/scwrl_776781056.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_776781056.pdb # conformation set from SCWRL output # naming current conformation Distill_TS1-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS2 looking for model 1 # Found a chain break before 69 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1770028094.pdb -s /var/tmp/to_scwrl_1770028094.seq -o /var/tmp/from_scwrl_1770028094.pdb > /var/tmp/scwrl_1770028094.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1770028094.pdb # conformation set from SCWRL output # naming current conformation Distill_TS2-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS3 looking for model 1 # Found a chain break before 69 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_328073721.pdb -s /var/tmp/to_scwrl_328073721.seq -o /var/tmp/from_scwrl_328073721.pdb > /var/tmp/scwrl_328073721.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_328073721.pdb # conformation set from SCWRL output # naming current conformation Distill_TS3-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS4 looking for model 1 # Found a chain break before 71 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_4444160.pdb -s /var/tmp/to_scwrl_4444160.seq -o /var/tmp/from_scwrl_4444160.pdb > /var/tmp/scwrl_4444160.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_4444160.pdb # conformation set from SCWRL output # naming current conformation Distill_TS4-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS5 looking for model 1 # Found a chain break before 63 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1558274256.pdb -s /var/tmp/to_scwrl_1558274256.seq -o /var/tmp/from_scwrl_1558274256.pdb > /var/tmp/scwrl_1558274256.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1558274256.pdb # conformation set from SCWRL output # naming current conformation Distill_TS5-scwrl # ReadConformPDB reading from PDB file servers/FALCON_CONSENSUS_TS1 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_77516533.pdb -s /var/tmp/to_scwrl_77516533.seq -o /var/tmp/from_scwrl_77516533.pdb > /var/tmp/scwrl_77516533.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_77516533.pdb # conformation set from SCWRL output # naming current conformation FALCON_CONSENSUS_TS1-scwrl # ReadConformPDB reading from PDB file servers/FALCON_CONSENSUS_TS2 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_968294753.pdb -s /var/tmp/to_scwrl_968294753.seq -o /var/tmp/from_scwrl_968294753.pdb > /var/tmp/scwrl_968294753.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_968294753.pdb # conformation set from SCWRL output # naming current conformation FALCON_CONSENSUS_TS2-scwrl # ReadConformPDB reading from PDB file servers/FALCON_CONSENSUS_TS3 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1766450677.pdb -s /var/tmp/to_scwrl_1766450677.seq -o /var/tmp/from_scwrl_1766450677.pdb > /var/tmp/scwrl_1766450677.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1766450677.pdb # conformation set from SCWRL output # naming current conformation FALCON_CONSENSUS_TS3-scwrl # ReadConformPDB reading from PDB file servers/FALCON_CONSENSUS_TS4 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1538024971.pdb -s /var/tmp/to_scwrl_1538024971.seq -o /var/tmp/from_scwrl_1538024971.pdb > /var/tmp/scwrl_1538024971.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1538024971.pdb # conformation set from SCWRL output # naming current conformation FALCON_CONSENSUS_TS4-scwrl # ReadConformPDB reading from PDB file servers/FALCON_CONSENSUS_TS5 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1717993473.pdb -s /var/tmp/to_scwrl_1717993473.seq -o /var/tmp/from_scwrl_1717993473.pdb > /var/tmp/scwrl_1717993473.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1717993473.pdb # conformation set from SCWRL output # naming current conformation FALCON_CONSENSUS_TS5-scwrl # ReadConformPDB reading from PDB file servers/FALCON_TS1 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_2088649710.pdb -s /var/tmp/to_scwrl_2088649710.seq -o /var/tmp/from_scwrl_2088649710.pdb > /var/tmp/scwrl_2088649710.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2088649710.pdb # conformation set from SCWRL output # naming current conformation FALCON_TS1-scwrl # ReadConformPDB reading from PDB file servers/FALCON_TS2 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_864705946.pdb -s /var/tmp/to_scwrl_864705946.seq -o /var/tmp/from_scwrl_864705946.pdb > /var/tmp/scwrl_864705946.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_864705946.pdb # conformation set from SCWRL output # naming current conformation FALCON_TS2-scwrl # ReadConformPDB reading from PDB file servers/FALCON_TS3 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1631622394.pdb -s /var/tmp/to_scwrl_1631622394.seq -o /var/tmp/from_scwrl_1631622394.pdb > /var/tmp/scwrl_1631622394.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1631622394.pdb # conformation set from SCWRL output # naming current conformation FALCON_TS3-scwrl # ReadConformPDB reading from PDB file servers/FALCON_TS4 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_2049582271.pdb -s /var/tmp/to_scwrl_2049582271.seq -o /var/tmp/from_scwrl_2049582271.pdb > /var/tmp/scwrl_2049582271.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2049582271.pdb # conformation set from SCWRL output # naming current conformation FALCON_TS4-scwrl # ReadConformPDB reading from PDB file servers/FALCON_TS5 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1682794225.pdb -s /var/tmp/to_scwrl_1682794225.seq -o /var/tmp/from_scwrl_1682794225.pdb > /var/tmp/scwrl_1682794225.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1682794225.pdb # conformation set from SCWRL output # naming current conformation FALCON_TS5-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS1 looking for model 1 # Found a chain break before 20 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1282873050.pdb -s /var/tmp/to_scwrl_1282873050.seq -o /var/tmp/from_scwrl_1282873050.pdb > /var/tmp/scwrl_1282873050.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1282873050.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS1-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS2 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_668116790.pdb -s /var/tmp/to_scwrl_668116790.seq -o /var/tmp/from_scwrl_668116790.pdb > /var/tmp/scwrl_668116790.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_668116790.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS2-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS3 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_329537772.pdb -s /var/tmp/to_scwrl_329537772.seq -o /var/tmp/from_scwrl_329537772.pdb > /var/tmp/scwrl_329537772.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_329537772.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS3-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS4 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1368066573.pdb -s /var/tmp/to_scwrl_1368066573.seq -o /var/tmp/from_scwrl_1368066573.pdb > /var/tmp/scwrl_1368066573.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1368066573.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS4-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS5 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_707962160.pdb -s /var/tmp/to_scwrl_707962160.seq -o /var/tmp/from_scwrl_707962160.pdb > /var/tmp/scwrl_707962160.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_707962160.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS5-scwrl # ReadConformPDB reading from PDB file servers/FEIG_TS1 looking for model 1 # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1868566113.pdb -s /var/tmp/to_scwrl_1868566113.seq -o /var/tmp/from_scwrl_1868566113.pdb > /var/tmp/scwrl_1868566113.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1868566113.pdb # conformation set from SCWRL output # naming current conformation FEIG_TS1-scwrl # ReadConformPDB reading from PDB file servers/FEIG_TS2 looking for model 1 # Found a chain break before 72 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1753920234.pdb -s /var/tmp/to_scwrl_1753920234.seq -o /var/tmp/from_scwrl_1753920234.pdb > /var/tmp/scwrl_1753920234.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1753920234.pdb # conformation set from SCWRL output # naming current conformation FEIG_TS2-scwrl # ReadConformPDB reading from PDB file servers/FEIG_TS3 looking for model 1 # Found a chain break before 72 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_766741818.pdb -s /var/tmp/to_scwrl_766741818.seq -o /var/tmp/from_scwrl_766741818.pdb > /var/tmp/scwrl_766741818.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_766741818.pdb # conformation set from SCWRL output # naming current conformation FEIG_TS3-scwrl # ReadConformPDB reading from PDB file servers/FEIG_TS4 looking for model 1 # Found a chain break before 72 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1478406433.pdb -s /var/tmp/to_scwrl_1478406433.seq -o /var/tmp/from_scwrl_1478406433.pdb > /var/tmp/scwrl_1478406433.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1478406433.pdb # conformation set from SCWRL output # naming current conformation FEIG_TS4-scwrl # ReadConformPDB reading from PDB file servers/FEIG_TS5 looking for model 1 # Found a chain break before 34 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_842561848.pdb -s /var/tmp/to_scwrl_842561848.seq -o /var/tmp/from_scwrl_842561848.pdb > /var/tmp/scwrl_842561848.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_842561848.pdb # conformation set from SCWRL output # naming current conformation FEIG_TS5-scwrl # ReadConformPDB reading from PDB file servers/FFASflextemplate_TS1 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_121327318.pdb -s /var/tmp/to_scwrl_121327318.seq -o /var/tmp/from_scwrl_121327318.pdb > /var/tmp/scwrl_121327318.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_121327318.pdb # conformation set from SCWRL output # naming current conformation FFASflextemplate_TS1-scwrl # ReadConformPDB reading from PDB file servers/FFASflextemplate_TS2 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_2032287901.pdb -s /var/tmp/to_scwrl_2032287901.seq -o /var/tmp/from_scwrl_2032287901.pdb > /var/tmp/scwrl_2032287901.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2032287901.pdb # conformation set from SCWRL output # naming current conformation FFASflextemplate_TS2-scwrl # ReadConformPDB reading from PDB file servers/FFASflextemplate_TS3 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1003275607.pdb -s /var/tmp/to_scwrl_1003275607.seq -o /var/tmp/from_scwrl_1003275607.pdb > /var/tmp/scwrl_1003275607.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1003275607.pdb # conformation set from SCWRL output # naming current conformation FFASflextemplate_TS3-scwrl # ReadConformPDB reading from PDB file servers/FFASflextemplate_TS4 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1934833180.pdb -s /var/tmp/to_scwrl_1934833180.seq -o /var/tmp/from_scwrl_1934833180.pdb > /var/tmp/scwrl_1934833180.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1934833180.pdb # conformation set from SCWRL output # naming current conformation FFASflextemplate_TS4-scwrl # ReadConformPDB reading from PDB file servers/FFASflextemplate_TS5 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_943371925.pdb -s /var/tmp/to_scwrl_943371925.seq -o /var/tmp/from_scwrl_943371925.pdb > /var/tmp/scwrl_943371925.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_943371925.pdb # conformation set from SCWRL output # naming current conformation FFASflextemplate_TS5-scwrl # ReadConformPDB reading from PDB file servers/FFASstandard_TS1 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_2022930545.pdb -s /var/tmp/to_scwrl_2022930545.seq -o /var/tmp/from_scwrl_2022930545.pdb > /var/tmp/scwrl_2022930545.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2022930545.pdb # conformation set from SCWRL output # naming current conformation FFASstandard_TS1-scwrl # ReadConformPDB reading from PDB file servers/FFASstandard_TS2 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_564130589.pdb -s /var/tmp/to_scwrl_564130589.seq -o /var/tmp/from_scwrl_564130589.pdb > /var/tmp/scwrl_564130589.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_564130589.pdb # conformation set from SCWRL output # naming current conformation FFASstandard_TS2-scwrl # ReadConformPDB reading from PDB file servers/FFASstandard_TS3 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_565916372.pdb -s /var/tmp/to_scwrl_565916372.seq -o /var/tmp/from_scwrl_565916372.pdb > /var/tmp/scwrl_565916372.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_565916372.pdb # conformation set from SCWRL output # naming current conformation FFASstandard_TS3-scwrl # ReadConformPDB reading from PDB file servers/FFASstandard_TS4 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_203520619.pdb -s /var/tmp/to_scwrl_203520619.seq -o /var/tmp/from_scwrl_203520619.pdb > /var/tmp/scwrl_203520619.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_203520619.pdb # conformation set from SCWRL output # naming current conformation FFASstandard_TS4-scwrl # ReadConformPDB reading from PDB file servers/FFASsuboptimal_TS1 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_568574750.pdb -s /var/tmp/to_scwrl_568574750.seq -o /var/tmp/from_scwrl_568574750.pdb > /var/tmp/scwrl_568574750.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_568574750.pdb # conformation set from SCWRL output # naming current conformation FFASsuboptimal_TS1-scwrl # ReadConformPDB reading from PDB file servers/FFASsuboptimal_TS2 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_2124190628.pdb -s /var/tmp/to_scwrl_2124190628.seq -o /var/tmp/from_scwrl_2124190628.pdb > /var/tmp/scwrl_2124190628.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2124190628.pdb # conformation set from SCWRL output # naming current conformation FFASsuboptimal_TS2-scwrl # ReadConformPDB reading from PDB file servers/FFASsuboptimal_TS3 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_281037152.pdb -s /var/tmp/to_scwrl_281037152.seq -o /var/tmp/from_scwrl_281037152.pdb > /var/tmp/scwrl_281037152.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_281037152.pdb # conformation set from SCWRL output # naming current conformation FFASsuboptimal_TS3-scwrl # ReadConformPDB reading from PDB file servers/FFASsuboptimal_TS4 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1536869502.pdb -s /var/tmp/to_scwrl_1536869502.seq -o /var/tmp/from_scwrl_1536869502.pdb > /var/tmp/scwrl_1536869502.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1536869502.pdb # conformation set from SCWRL output # naming current conformation FFASsuboptimal_TS4-scwrl # ReadConformPDB reading from PDB file servers/FFASsuboptimal_TS5 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1743157658.pdb -s /var/tmp/to_scwrl_1743157658.seq -o /var/tmp/from_scwrl_1743157658.pdb > /var/tmp/scwrl_1743157658.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1743157658.pdb # conformation set from SCWRL output # naming current conformation FFASsuboptimal_TS5-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS1 looking for model 1 # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1819062124.pdb -s /var/tmp/to_scwrl_1819062124.seq -o /var/tmp/from_scwrl_1819062124.pdb > /var/tmp/scwrl_1819062124.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1819062124.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS2 looking for model 1 # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1107379329.pdb -s /var/tmp/to_scwrl_1107379329.seq -o /var/tmp/from_scwrl_1107379329.pdb > /var/tmp/scwrl_1107379329.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1107379329.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS3 looking for model 1 # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1684323721.pdb -s /var/tmp/to_scwrl_1684323721.seq -o /var/tmp/from_scwrl_1684323721.pdb > /var/tmp/scwrl_1684323721.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1684323721.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS4 looking for model 1 # Found a chain break before 6 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_536284423.pdb -s /var/tmp/to_scwrl_536284423.seq -o /var/tmp/from_scwrl_536284423.pdb > /var/tmp/scwrl_536284423.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_536284423.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS5 looking for model 1 # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_591518077.pdb -s /var/tmp/to_scwrl_591518077.seq -o /var/tmp/from_scwrl_591518077.pdb > /var/tmp/scwrl_591518077.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_591518077.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_KM_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1586422345.pdb -s /var/tmp/to_scwrl_1586422345.seq -o /var/tmp/from_scwrl_1586422345.pdb > /var/tmp/scwrl_1586422345.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1586422345.pdb # conformation set from SCWRL output # naming current conformation FUGUE_KM_AL1-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_KM_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_71595002.pdb -s /var/tmp/to_scwrl_71595002.seq -o /var/tmp/from_scwrl_71595002.pdb > /var/tmp/scwrl_71595002.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_71595002.pdb # conformation set from SCWRL output # naming current conformation FUGUE_KM_AL2-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_KM_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1874391127.pdb -s /var/tmp/to_scwrl_1874391127.seq -o /var/tmp/from_scwrl_1874391127.pdb > /var/tmp/scwrl_1874391127.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1874391127.pdb # conformation set from SCWRL output # naming current conformation FUGUE_KM_AL3-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_KM_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_107055488.pdb -s /var/tmp/to_scwrl_107055488.seq -o /var/tmp/from_scwrl_107055488.pdb > /var/tmp/scwrl_107055488.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_107055488.pdb # conformation set from SCWRL output # naming current conformation FUGUE_KM_AL4-scwrl # ReadConformPDB reading from PDB file servers/Fiser-M4T_TS1 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_401132774.pdb -s /var/tmp/to_scwrl_401132774.seq -o /var/tmp/from_scwrl_401132774.pdb > /var/tmp/scwrl_401132774.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_401132774.pdb # conformation set from SCWRL output # naming current conformation Fiser-M4T_TS1-scwrl # ReadConformPDB reading from PDB file servers/Frankenstein_TS1 looking for model 1 # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1094974054.pdb -s /var/tmp/to_scwrl_1094974054.seq -o /var/tmp/from_scwrl_1094974054.pdb > /var/tmp/scwrl_1094974054.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1094974054.pdb # conformation set from SCWRL output # naming current conformation Frankenstein_TS1-scwrl # ReadConformPDB reading from PDB file servers/Frankenstein_TS2 looking for model 1 # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_815017648.pdb -s /var/tmp/to_scwrl_815017648.seq -o /var/tmp/from_scwrl_815017648.pdb > /var/tmp/scwrl_815017648.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_815017648.pdb # conformation set from SCWRL output # naming current conformation Frankenstein_TS2-scwrl # ReadConformPDB reading from PDB file servers/Frankenstein_TS3 looking for model 1 # Found a chain break before 49 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_122215240.pdb -s /var/tmp/to_scwrl_122215240.seq -o /var/tmp/from_scwrl_122215240.pdb > /var/tmp/scwrl_122215240.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_122215240.pdb # conformation set from SCWRL output # naming current conformation Frankenstein_TS3-scwrl # ReadConformPDB reading from PDB file servers/Frankenstein_TS4 looking for model 1 # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_701410642.pdb -s /var/tmp/to_scwrl_701410642.seq -o /var/tmp/from_scwrl_701410642.pdb > /var/tmp/scwrl_701410642.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_701410642.pdb # conformation set from SCWRL output # naming current conformation Frankenstein_TS4-scwrl # ReadConformPDB reading from PDB file servers/Frankenstein_TS5 looking for model 1 # Found a chain break before 18 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1581759465.pdb -s /var/tmp/to_scwrl_1581759465.seq -o /var/tmp/from_scwrl_1581759465.pdb > /var/tmp/scwrl_1581759465.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1581759465.pdb # conformation set from SCWRL output # naming current conformation Frankenstein_TS5-scwrl # ReadConformPDB reading from PDB file servers/GS-KudlatyPred_TS1 looking for model 1 # Found a chain break before 59 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1600621673.pdb -s /var/tmp/to_scwrl_1600621673.seq -o /var/tmp/from_scwrl_1600621673.pdb > /var/tmp/scwrl_1600621673.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1600621673.pdb # conformation set from SCWRL output # naming current conformation GS-KudlatyPred_TS1-scwrl # ReadConformPDB reading from PDB file servers/GS-KudlatyPred_TS2 looking for model 1 # Found a chain break before 57 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1543972490.pdb -s /var/tmp/to_scwrl_1543972490.seq -o /var/tmp/from_scwrl_1543972490.pdb > /var/tmp/scwrl_1543972490.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1543972490.pdb # conformation set from SCWRL output # naming current conformation GS-KudlatyPred_TS2-scwrl # ReadConformPDB reading from PDB file servers/GS-MetaServer2_TS1 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1703086784.pdb -s /var/tmp/to_scwrl_1703086784.seq -o /var/tmp/from_scwrl_1703086784.pdb > /var/tmp/scwrl_1703086784.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1703086784.pdb # conformation set from SCWRL output # naming current conformation GS-MetaServer2_TS1-scwrl # ReadConformPDB reading from PDB file servers/GS-MetaServer2_TS2 looking for model 1 # Found a chain break before 50 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1485425928.pdb -s /var/tmp/to_scwrl_1485425928.seq -o /var/tmp/from_scwrl_1485425928.pdb > /var/tmp/scwrl_1485425928.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1485425928.pdb # conformation set from SCWRL output # naming current conformation GS-MetaServer2_TS2-scwrl # ReadConformPDB reading from PDB file servers/GS-MetaServer2_TS4 looking for model 1 # Found a chain break before 46 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_399764450.pdb -s /var/tmp/to_scwrl_399764450.seq -o /var/tmp/from_scwrl_399764450.pdb > /var/tmp/scwrl_399764450.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_399764450.pdb # conformation set from SCWRL output # naming current conformation GS-MetaServer2_TS4-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1490436317.pdb -s /var/tmp/to_scwrl_1490436317.seq -o /var/tmp/from_scwrl_1490436317.pdb > /var/tmp/scwrl_1490436317.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1490436317.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS1-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2 looking for model 1 # Found a chain break before 46 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_281314206.pdb -s /var/tmp/to_scwrl_281314206.seq -o /var/tmp/from_scwrl_281314206.pdb > /var/tmp/scwrl_281314206.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_281314206.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS2-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3 looking for model 1 # Found a chain break before 46 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_275211348.pdb -s /var/tmp/to_scwrl_275211348.seq -o /var/tmp/from_scwrl_275211348.pdb > /var/tmp/scwrl_275211348.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_275211348.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS3-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4 looking for model 1 # Found a chain break before 46 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_2054566907.pdb -s /var/tmp/to_scwrl_2054566907.seq -o /var/tmp/from_scwrl_2054566907.pdb > /var/tmp/scwrl_2054566907.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2054566907.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS4-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5 looking for model 1 # Found a chain break before 64 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_847230578.pdb -s /var/tmp/to_scwrl_847230578.seq -o /var/tmp/from_scwrl_847230578.pdb > /var/tmp/scwrl_847230578.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_847230578.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS5-scwrl # ReadConformPDB reading from PDB file servers/HHpred2_TS1 looking for model 1 # Found a chain break before 48 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_478731968.pdb -s /var/tmp/to_scwrl_478731968.seq -o /var/tmp/from_scwrl_478731968.pdb > /var/tmp/scwrl_478731968.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_478731968.pdb # conformation set from SCWRL output # naming current conformation HHpred2_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred4_TS1 looking for model 1 # Found a chain break before 48 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_475658010.pdb -s /var/tmp/to_scwrl_475658010.seq -o /var/tmp/from_scwrl_475658010.pdb > /var/tmp/scwrl_475658010.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_475658010.pdb # conformation set from SCWRL output # naming current conformation HHpred4_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred5_TS1 looking for model 1 # Found a chain break before 8 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_823937559.pdb -s /var/tmp/to_scwrl_823937559.seq -o /var/tmp/from_scwrl_823937559.pdb > /var/tmp/scwrl_823937559.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_823937559.pdb # conformation set from SCWRL output # naming current conformation HHpred5_TS1-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_Server_TS1 looking for model 1 # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_759769120.pdb -s /var/tmp/to_scwrl_759769120.seq -o /var/tmp/from_scwrl_759769120.pdb > /var/tmp/scwrl_759769120.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_759769120.pdb # conformation set from SCWRL output # naming current conformation LOOPP_Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_Server_TS2 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_2012527512.pdb -s /var/tmp/to_scwrl_2012527512.seq -o /var/tmp/from_scwrl_2012527512.pdb > /var/tmp/scwrl_2012527512.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2012527512.pdb # conformation set from SCWRL output # naming current conformation LOOPP_Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_Server_TS3 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_419611570.pdb -s /var/tmp/to_scwrl_419611570.seq -o /var/tmp/from_scwrl_419611570.pdb > /var/tmp/scwrl_419611570.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_419611570.pdb # conformation set from SCWRL output # naming current conformation LOOPP_Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_Server_TS4 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_431347597.pdb -s /var/tmp/to_scwrl_431347597.seq -o /var/tmp/from_scwrl_431347597.pdb > /var/tmp/scwrl_431347597.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_431347597.pdb # conformation set from SCWRL output # naming current conformation LOOPP_Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_Server_TS5 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_972423195.pdb -s /var/tmp/to_scwrl_972423195.seq -o /var/tmp/from_scwrl_972423195.pdb > /var/tmp/scwrl_972423195.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_972423195.pdb # conformation set from SCWRL output # naming current conformation LOOPP_Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/METATASSER_TS1 looking for model 1 # Found a chain break before 49 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_2103935291.pdb -s /var/tmp/to_scwrl_2103935291.seq -o /var/tmp/from_scwrl_2103935291.pdb > /var/tmp/scwrl_2103935291.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2103935291.pdb # conformation set from SCWRL output # naming current conformation METATASSER_TS1-scwrl # ReadConformPDB reading from PDB file servers/METATASSER_TS2 looking for model 1 # Found a chain break before 71 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_967632021.pdb -s /var/tmp/to_scwrl_967632021.seq -o /var/tmp/from_scwrl_967632021.pdb > /var/tmp/scwrl_967632021.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_967632021.pdb # conformation set from SCWRL output # naming current conformation METATASSER_TS2-scwrl # ReadConformPDB reading from PDB file servers/METATASSER_TS3 looking for model 1 # Found a chain break before 49 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1563941272.pdb -s /var/tmp/to_scwrl_1563941272.seq -o /var/tmp/from_scwrl_1563941272.pdb > /var/tmp/scwrl_1563941272.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1563941272.pdb # conformation set from SCWRL output # naming current conformation METATASSER_TS3-scwrl # ReadConformPDB reading from PDB file servers/METATASSER_TS4 looking for model 1 # Found a chain break before 72 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1542873989.pdb -s /var/tmp/to_scwrl_1542873989.seq -o /var/tmp/from_scwrl_1542873989.pdb > /var/tmp/scwrl_1542873989.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1542873989.pdb # conformation set from SCWRL output # naming current conformation METATASSER_TS4-scwrl # ReadConformPDB reading from PDB file servers/METATASSER_TS5 looking for model 1 # Found a chain break before 69 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1039227023.pdb -s /var/tmp/to_scwrl_1039227023.seq -o /var/tmp/from_scwrl_1039227023.pdb > /var/tmp/scwrl_1039227023.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1039227023.pdb # conformation set from SCWRL output # naming current conformation METATASSER_TS5-scwrl # ReadConformPDB reading from PDB file servers/MUFOLD-MD_TS1 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1290848752.pdb -s /var/tmp/to_scwrl_1290848752.seq -o /var/tmp/from_scwrl_1290848752.pdb > /var/tmp/scwrl_1290848752.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1290848752.pdb # conformation set from SCWRL output # naming current conformation MUFOLD-MD_TS1-scwrl # ReadConformPDB reading from PDB file servers/MUFOLD-MD_TS2 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1649929477.pdb -s /var/tmp/to_scwrl_1649929477.seq -o /var/tmp/from_scwrl_1649929477.pdb > /var/tmp/scwrl_1649929477.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1649929477.pdb # conformation set from SCWRL output # naming current conformation MUFOLD-MD_TS2-scwrl # ReadConformPDB reading from PDB file servers/MUFOLD-MD_TS3 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1440359796.pdb -s /var/tmp/to_scwrl_1440359796.seq -o /var/tmp/from_scwrl_1440359796.pdb > /var/tmp/scwrl_1440359796.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1440359796.pdb # conformation set from SCWRL output # naming current conformation MUFOLD-MD_TS3-scwrl # ReadConformPDB reading from PDB file servers/MUFOLD-MD_TS4 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_238339160.pdb -s /var/tmp/to_scwrl_238339160.seq -o /var/tmp/from_scwrl_238339160.pdb > /var/tmp/scwrl_238339160.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_238339160.pdb # conformation set from SCWRL output # naming current conformation MUFOLD-MD_TS4-scwrl # ReadConformPDB reading from PDB file servers/MUFOLD-MD_TS5 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_317463479.pdb -s /var/tmp/to_scwrl_317463479.seq -o /var/tmp/from_scwrl_317463479.pdb > /var/tmp/scwrl_317463479.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_317463479.pdb # conformation set from SCWRL output # naming current conformation MUFOLD-MD_TS5-scwrl # ReadConformPDB reading from PDB file servers/MUFOLD-Server_TS1 looking for model 1 # Found a chain break before 72 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1562575036.pdb -s /var/tmp/to_scwrl_1562575036.seq -o /var/tmp/from_scwrl_1562575036.pdb > /var/tmp/scwrl_1562575036.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1562575036.pdb # conformation set from SCWRL output # naming current conformation MUFOLD-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/MUFOLD-Server_TS2 looking for model 1 # Found a chain break before 72 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_939749803.pdb -s /var/tmp/to_scwrl_939749803.seq -o /var/tmp/from_scwrl_939749803.pdb > /var/tmp/scwrl_939749803.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_939749803.pdb # conformation set from SCWRL output # naming current conformation MUFOLD-Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/MUFOLD-Server_TS3 looking for model 1 # Found a chain break before 71 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1899222944.pdb -s /var/tmp/to_scwrl_1899222944.seq -o /var/tmp/from_scwrl_1899222944.pdb > /var/tmp/scwrl_1899222944.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1899222944.pdb # conformation set from SCWRL output # naming current conformation MUFOLD-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/MUFOLD-Server_TS4 looking for model 1 # Found a chain break before 72 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1015713063.pdb -s /var/tmp/to_scwrl_1015713063.seq -o /var/tmp/from_scwrl_1015713063.pdb > /var/tmp/scwrl_1015713063.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1015713063.pdb # conformation set from SCWRL output # naming current conformation MUFOLD-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/MUFOLD-Server_TS5 looking for model 1 # Found a chain break before 72 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_336238646.pdb -s /var/tmp/to_scwrl_336238646.seq -o /var/tmp/from_scwrl_336238646.pdb > /var/tmp/scwrl_336238646.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_336238646.pdb # conformation set from SCWRL output # naming current conformation MUFOLD-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/MULTICOM-CLUSTER_TS1 looking for model 1 # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1454826081.pdb -s /var/tmp/to_scwrl_1454826081.seq -o /var/tmp/from_scwrl_1454826081.pdb > /var/tmp/scwrl_1454826081.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1454826081.pdb # conformation set from SCWRL output # naming current conformation MULTICOM-CLUSTER_TS1-scwrl # ReadConformPDB reading from PDB file servers/MULTICOM-CLUSTER_TS2 looking for model 1 # Found a chain break before 18 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_353655344.pdb -s /var/tmp/to_scwrl_353655344.seq -o /var/tmp/from_scwrl_353655344.pdb > /var/tmp/scwrl_353655344.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_353655344.pdb # conformation set from SCWRL output # naming current conformation MULTICOM-CLUSTER_TS2-scwrl # ReadConformPDB reading from PDB file servers/MULTICOM-CLUSTER_TS3 looking for model 1 # Found a chain break before 48 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_736003096.pdb -s /var/tmp/to_scwrl_736003096.seq -o /var/tmp/from_scwrl_736003096.pdb > /var/tmp/scwrl_736003096.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_736003096.pdb # conformation set from SCWRL output # naming current conformation MULTICOM-CLUSTER_TS3-scwrl # ReadConformPDB reading from PDB file servers/MULTICOM-CLUSTER_TS4 looking for model 1 # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_797778753.pdb -s /var/tmp/to_scwrl_797778753.seq -o /var/tmp/from_scwrl_797778753.pdb > /var/tmp/scwrl_797778753.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_797778753.pdb # conformation set from SCWRL output # naming current conformation MULTICOM-CLUSTER_TS4-scwrl # ReadConformPDB reading from PDB file servers/MULTICOM-CLUSTER_TS5 looking for model 1 # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_634969550.pdb -s /var/tmp/to_scwrl_634969550.seq -o /var/tmp/from_scwrl_634969550.pdb > /var/tmp/scwrl_634969550.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_634969550.pdb # conformation set from SCWRL output # naming current conformation MULTICOM-CLUSTER_TS5-scwrl # ReadConformPDB reading from PDB file servers/MULTICOM-CMFR_TS1 looking for model 1 # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1011214445.pdb -s /var/tmp/to_scwrl_1011214445.seq -o /var/tmp/from_scwrl_1011214445.pdb > /var/tmp/scwrl_1011214445.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1011214445.pdb # conformation set from SCWRL output # naming current conformation MULTICOM-CMFR_TS1-scwrl # ReadConformPDB reading from PDB file servers/MULTICOM-CMFR_TS2 looking for model 1 # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_704862013.pdb -s /var/tmp/to_scwrl_704862013.seq -o /var/tmp/from_scwrl_704862013.pdb > /var/tmp/scwrl_704862013.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_704862013.pdb # conformation set from SCWRL output # naming current conformation MULTICOM-CMFR_TS2-scwrl # ReadConformPDB reading from PDB file servers/MULTICOM-CMFR_TS3 looking for model 1 # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1482200127.pdb -s /var/tmp/to_scwrl_1482200127.seq -o /var/tmp/from_scwrl_1482200127.pdb > /var/tmp/scwrl_1482200127.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1482200127.pdb # conformation set from SCWRL output # naming current conformation MULTICOM-CMFR_TS3-scwrl # ReadConformPDB reading from PDB file servers/MULTICOM-CMFR_TS4 looking for model 1 # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1489946412.pdb -s /var/tmp/to_scwrl_1489946412.seq -o /var/tmp/from_scwrl_1489946412.pdb > /var/tmp/scwrl_1489946412.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1489946412.pdb # conformation set from SCWRL output # naming current conformation MULTICOM-CMFR_TS4-scwrl # ReadConformPDB reading from PDB file servers/MULTICOM-CMFR_TS5 looking for model 1 # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1180520022.pdb -s /var/tmp/to_scwrl_1180520022.seq -o /var/tmp/from_scwrl_1180520022.pdb > /var/tmp/scwrl_1180520022.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1180520022.pdb # conformation set from SCWRL output # naming current conformation MULTICOM-CMFR_TS5-scwrl # ReadConformPDB reading from PDB file servers/MULTICOM-RANK_TS1 looking for model 1 # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_158654039.pdb -s /var/tmp/to_scwrl_158654039.seq -o /var/tmp/from_scwrl_158654039.pdb > /var/tmp/scwrl_158654039.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_158654039.pdb # conformation set from SCWRL output # naming current conformation MULTICOM-RANK_TS1-scwrl # ReadConformPDB reading from PDB file servers/MULTICOM-RANK_TS2 looking for model 1 # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_102231885.pdb -s /var/tmp/to_scwrl_102231885.seq -o /var/tmp/from_scwrl_102231885.pdb > /var/tmp/scwrl_102231885.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_102231885.pdb # conformation set from SCWRL output # naming current conformation MULTICOM-RANK_TS2-scwrl # ReadConformPDB reading from PDB file servers/MULTICOM-RANK_TS3 looking for model 1 # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1045563888.pdb -s /var/tmp/to_scwrl_1045563888.seq -o /var/tmp/from_scwrl_1045563888.pdb > /var/tmp/scwrl_1045563888.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1045563888.pdb # conformation set from SCWRL output # naming current conformation MULTICOM-RANK_TS3-scwrl # ReadConformPDB reading from PDB file servers/MULTICOM-RANK_TS4 looking for model 1 # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_578265609.pdb -s /var/tmp/to_scwrl_578265609.seq -o /var/tmp/from_scwrl_578265609.pdb > /var/tmp/scwrl_578265609.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_578265609.pdb # conformation set from SCWRL output # naming current conformation MULTICOM-RANK_TS4-scwrl # ReadConformPDB reading from PDB file servers/MULTICOM-RANK_TS5 looking for model 1 # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_533579483.pdb -s /var/tmp/to_scwrl_533579483.seq -o /var/tmp/from_scwrl_533579483.pdb > /var/tmp/scwrl_533579483.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_533579483.pdb # conformation set from SCWRL output # naming current conformation MULTICOM-RANK_TS5-scwrl # ReadConformPDB reading from PDB file servers/MULTICOM-REFINE_TS1 looking for model 1 # Found a chain break before 53 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_2017987083.pdb -s /var/tmp/to_scwrl_2017987083.seq -o /var/tmp/from_scwrl_2017987083.pdb > /var/tmp/scwrl_2017987083.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2017987083.pdb # conformation set from SCWRL output # naming current conformation MULTICOM-REFINE_TS1-scwrl # ReadConformPDB reading from PDB file servers/MULTICOM-REFINE_TS2 looking for model 1 # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_534717253.pdb -s /var/tmp/to_scwrl_534717253.seq -o /var/tmp/from_scwrl_534717253.pdb > /var/tmp/scwrl_534717253.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_534717253.pdb # conformation set from SCWRL output # naming current conformation MULTICOM-REFINE_TS2-scwrl # ReadConformPDB reading from PDB file servers/MULTICOM-REFINE_TS3 looking for model 1 # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1501211503.pdb -s /var/tmp/to_scwrl_1501211503.seq -o /var/tmp/from_scwrl_1501211503.pdb > /var/tmp/scwrl_1501211503.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1501211503.pdb # conformation set from SCWRL output # naming current conformation MULTICOM-REFINE_TS3-scwrl # ReadConformPDB reading from PDB file servers/MULTICOM-REFINE_TS4 looking for model 1 # Found a chain break before 53 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1434444708.pdb -s /var/tmp/to_scwrl_1434444708.seq -o /var/tmp/from_scwrl_1434444708.pdb > /var/tmp/scwrl_1434444708.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1434444708.pdb # conformation set from SCWRL output # naming current conformation MULTICOM-REFINE_TS4-scwrl # ReadConformPDB reading from PDB file servers/MULTICOM-REFINE_TS5 looking for model 1 # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_2077591242.pdb -s /var/tmp/to_scwrl_2077591242.seq -o /var/tmp/from_scwrl_2077591242.pdb > /var/tmp/scwrl_2077591242.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2077591242.pdb # conformation set from SCWRL output # naming current conformation MULTICOM-REFINE_TS5-scwrl # ReadConformPDB reading from PDB file servers/MUProt_TS1 looking for model 1 # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_392954879.pdb -s /var/tmp/to_scwrl_392954879.seq -o /var/tmp/from_scwrl_392954879.pdb > /var/tmp/scwrl_392954879.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_392954879.pdb # conformation set from SCWRL output # naming current conformation MUProt_TS1-scwrl # ReadConformPDB reading from PDB file servers/MUProt_TS2 looking for model 1 # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_577809814.pdb -s /var/tmp/to_scwrl_577809814.seq -o /var/tmp/from_scwrl_577809814.pdb > /var/tmp/scwrl_577809814.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_577809814.pdb # conformation set from SCWRL output # naming current conformation MUProt_TS2-scwrl # ReadConformPDB reading from PDB file servers/MUProt_TS3 looking for model 1 # Found a chain break before 49 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1580037073.pdb -s /var/tmp/to_scwrl_1580037073.seq -o /var/tmp/from_scwrl_1580037073.pdb > /var/tmp/scwrl_1580037073.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1580037073.pdb # conformation set from SCWRL output # naming current conformation MUProt_TS3-scwrl # ReadConformPDB reading from PDB file servers/MUProt_TS4 looking for model 1 # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1833314675.pdb -s /var/tmp/to_scwrl_1833314675.seq -o /var/tmp/from_scwrl_1833314675.pdb > /var/tmp/scwrl_1833314675.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1833314675.pdb # conformation set from SCWRL output # naming current conformation MUProt_TS4-scwrl # ReadConformPDB reading from PDB file servers/MUProt_TS5 looking for model 1 # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_816148975.pdb -s /var/tmp/to_scwrl_816148975.seq -o /var/tmp/from_scwrl_816148975.pdb > /var/tmp/scwrl_816148975.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_816148975.pdb # conformation set from SCWRL output # naming current conformation MUProt_TS5-scwrl # ReadConformPDB reading from PDB file servers/MUSTER_TS1 looking for model 1 # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1897500552.pdb -s /var/tmp/to_scwrl_1897500552.seq -o /var/tmp/from_scwrl_1897500552.pdb > /var/tmp/scwrl_1897500552.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1897500552.pdb # conformation set from SCWRL output # naming current conformation MUSTER_TS1-scwrl # ReadConformPDB reading from PDB file servers/MUSTER_TS2 looking for model 1 # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1248406064.pdb -s /var/tmp/to_scwrl_1248406064.seq -o /var/tmp/from_scwrl_1248406064.pdb > /var/tmp/scwrl_1248406064.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1248406064.pdb # conformation set from SCWRL output # naming current conformation MUSTER_TS2-scwrl # ReadConformPDB reading from PDB file servers/MUSTER_TS3 looking for model 1 # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1755898777.pdb -s /var/tmp/to_scwrl_1755898777.seq -o /var/tmp/from_scwrl_1755898777.pdb > /var/tmp/scwrl_1755898777.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1755898777.pdb # conformation set from SCWRL output # naming current conformation MUSTER_TS3-scwrl # ReadConformPDB reading from PDB file servers/MUSTER_TS4 looking for model 1 # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1649239849.pdb -s /var/tmp/to_scwrl_1649239849.seq -o /var/tmp/from_scwrl_1649239849.pdb > /var/tmp/scwrl_1649239849.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1649239849.pdb # conformation set from SCWRL output # naming current conformation MUSTER_TS4-scwrl # ReadConformPDB reading from PDB file servers/MUSTER_TS5 looking for model 1 # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_116635480.pdb -s /var/tmp/to_scwrl_116635480.seq -o /var/tmp/from_scwrl_116635480.pdb > /var/tmp/scwrl_116635480.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_116635480.pdb # conformation set from SCWRL output # naming current conformation MUSTER_TS5-scwrl # ReadConformPDB reading from PDB file servers/OLGAFS_TS1 looking for model 1 # Found a chain break before 64 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_2092137423.pdb -s /var/tmp/to_scwrl_2092137423.seq -o /var/tmp/from_scwrl_2092137423.pdb > /var/tmp/scwrl_2092137423.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2092137423.pdb # conformation set from SCWRL output # naming current conformation OLGAFS_TS1-scwrl # ReadConformPDB reading from PDB file servers/OLGAFS_TS2 looking for model 1 # Found a chain break before 64 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_956582285.pdb -s /var/tmp/to_scwrl_956582285.seq -o /var/tmp/from_scwrl_956582285.pdb > /var/tmp/scwrl_956582285.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_956582285.pdb # conformation set from SCWRL output # naming current conformation OLGAFS_TS2-scwrl # ReadConformPDB reading from PDB file servers/OLGAFS_TS3 looking for model 1 # Found a chain break before 64 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_470290825.pdb -s /var/tmp/to_scwrl_470290825.seq -o /var/tmp/from_scwrl_470290825.pdb > /var/tmp/scwrl_470290825.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_470290825.pdb # conformation set from SCWRL output # naming current conformation OLGAFS_TS3-scwrl # ReadConformPDB reading from PDB file servers/OLGAFS_TS4 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_680656872.pdb -s /var/tmp/to_scwrl_680656872.seq -o /var/tmp/from_scwrl_680656872.pdb > /var/tmp/scwrl_680656872.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_680656872.pdb # conformation set from SCWRL output # naming current conformation OLGAFS_TS4-scwrl # ReadConformPDB reading from PDB file servers/OLGAFS_TS5 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1754361037.pdb -s /var/tmp/to_scwrl_1754361037.seq -o /var/tmp/from_scwrl_1754361037.pdb > /var/tmp/scwrl_1754361037.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1754361037.pdb # conformation set from SCWRL output # naming current conformation OLGAFS_TS5-scwrl # ReadConformPDB reading from PDB file servers/PS2-server_TS1 looking for model 1 # Found a chain break before 48 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1105260374.pdb -s /var/tmp/to_scwrl_1105260374.seq -o /var/tmp/from_scwrl_1105260374.pdb > /var/tmp/scwrl_1105260374.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1105260374.pdb # conformation set from SCWRL output # naming current conformation PS2-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/PS2-server_TS2 looking for model 1 # Found a chain break before 15 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1691871316.pdb -s /var/tmp/to_scwrl_1691871316.seq -o /var/tmp/from_scwrl_1691871316.pdb > /var/tmp/scwrl_1691871316.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1691871316.pdb # conformation set from SCWRL output # naming current conformation PS2-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/PS2-server_TS3 looking for model 1 # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_311739403.pdb -s /var/tmp/to_scwrl_311739403.seq -o /var/tmp/from_scwrl_311739403.pdb > /var/tmp/scwrl_311739403.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_311739403.pdb # conformation set from SCWRL output # naming current conformation PS2-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/PS2-server_TS4 looking for model 1 # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_439976856.pdb -s /var/tmp/to_scwrl_439976856.seq -o /var/tmp/from_scwrl_439976856.pdb > /var/tmp/scwrl_439976856.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_439976856.pdb # conformation set from SCWRL output # naming current conformation PS2-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/PS2-server_TS5 looking for model 1 # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1034334082.pdb -s /var/tmp/to_scwrl_1034334082.seq -o /var/tmp/from_scwrl_1034334082.pdb > /var/tmp/scwrl_1034334082.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1034334082.pdb # conformation set from SCWRL output # naming current conformation PS2-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/PSI_TS1 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1492259425.pdb -s /var/tmp/to_scwrl_1492259425.seq -o /var/tmp/from_scwrl_1492259425.pdb > /var/tmp/scwrl_1492259425.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1492259425.pdb # conformation set from SCWRL output # naming current conformation PSI_TS1-scwrl # ReadConformPDB reading from PDB file servers/PSI_TS2 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_598630895.pdb -s /var/tmp/to_scwrl_598630895.seq -o /var/tmp/from_scwrl_598630895.pdb > /var/tmp/scwrl_598630895.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_598630895.pdb # conformation set from SCWRL output # naming current conformation PSI_TS2-scwrl # ReadConformPDB reading from PDB file servers/PSI_TS3 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1136565967.pdb -s /var/tmp/to_scwrl_1136565967.seq -o /var/tmp/from_scwrl_1136565967.pdb > /var/tmp/scwrl_1136565967.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1136565967.pdb # conformation set from SCWRL output # naming current conformation PSI_TS3-scwrl # ReadConformPDB reading from PDB file servers/PSI_TS4 looking for model 1 # Found a chain break before 69 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_390339666.pdb -s /var/tmp/to_scwrl_390339666.seq -o /var/tmp/from_scwrl_390339666.pdb > /var/tmp/scwrl_390339666.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_390339666.pdb # conformation set from SCWRL output # naming current conformation PSI_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pcons_dot_net_TS1 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1176896504.pdb -s /var/tmp/to_scwrl_1176896504.seq -o /var/tmp/from_scwrl_1176896504.pdb > /var/tmp/scwrl_1176896504.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1176896504.pdb # conformation set from SCWRL output # naming current conformation Pcons_dot_net_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pcons_dot_net_TS2 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1670145450.pdb -s /var/tmp/to_scwrl_1670145450.seq -o /var/tmp/from_scwrl_1670145450.pdb > /var/tmp/scwrl_1670145450.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1670145450.pdb # conformation set from SCWRL output # naming current conformation Pcons_dot_net_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pcons_dot_net_TS3 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_260843102.pdb -s /var/tmp/to_scwrl_260843102.seq -o /var/tmp/from_scwrl_260843102.pdb > /var/tmp/scwrl_260843102.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_260843102.pdb # conformation set from SCWRL output # naming current conformation Pcons_dot_net_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pcons_dot_net_TS4 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1711613757.pdb -s /var/tmp/to_scwrl_1711613757.seq -o /var/tmp/from_scwrl_1711613757.pdb > /var/tmp/scwrl_1711613757.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1711613757.pdb # conformation set from SCWRL output # naming current conformation Pcons_dot_net_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pcons_dot_net_TS5 looking for model 1 # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1023873307.pdb -s /var/tmp/to_scwrl_1023873307.seq -o /var/tmp/from_scwrl_1023873307.pdb > /var/tmp/scwrl_1023873307.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1023873307.pdb # conformation set from SCWRL output # naming current conformation Pcons_dot_net_TS5-scwrl # ReadConformPDB reading from PDB file servers/Pcons_local_TS1 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1695287810.pdb -s /var/tmp/to_scwrl_1695287810.seq -o /var/tmp/from_scwrl_1695287810.pdb > /var/tmp/scwrl_1695287810.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1695287810.pdb # conformation set from SCWRL output # naming current conformation Pcons_local_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pcons_local_TS2 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1641721353.pdb -s /var/tmp/to_scwrl_1641721353.seq -o /var/tmp/from_scwrl_1641721353.pdb > /var/tmp/scwrl_1641721353.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1641721353.pdb # conformation set from SCWRL output # naming current conformation Pcons_local_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pcons_local_TS3 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1416828185.pdb -s /var/tmp/to_scwrl_1416828185.seq -o /var/tmp/from_scwrl_1416828185.pdb > /var/tmp/scwrl_1416828185.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1416828185.pdb # conformation set from SCWRL output # naming current conformation Pcons_local_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pcons_local_TS4 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_125613978.pdb -s /var/tmp/to_scwrl_125613978.seq -o /var/tmp/from_scwrl_125613978.pdb > /var/tmp/scwrl_125613978.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_125613978.pdb # conformation set from SCWRL output # naming current conformation Pcons_local_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pcons_local_TS5 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1074274779.pdb -s /var/tmp/to_scwrl_1074274779.seq -o /var/tmp/from_scwrl_1074274779.pdb > /var/tmp/scwrl_1074274779.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1074274779.pdb # conformation set from SCWRL output # naming current conformation Pcons_local_TS5-scwrl # ReadConformPDB reading from PDB file servers/Pcons_multi_TS1 looking for model 1 # Found a chain break before 58 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1102659213.pdb -s /var/tmp/to_scwrl_1102659213.seq -o /var/tmp/from_scwrl_1102659213.pdb > /var/tmp/scwrl_1102659213.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1102659213.pdb # conformation set from SCWRL output # naming current conformation Pcons_multi_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pcons_multi_TS2 looking for model 1 # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_941762953.pdb -s /var/tmp/to_scwrl_941762953.seq -o /var/tmp/from_scwrl_941762953.pdb > /var/tmp/scwrl_941762953.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_941762953.pdb # conformation set from SCWRL output # naming current conformation Pcons_multi_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pcons_multi_TS3 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_824291685.pdb -s /var/tmp/to_scwrl_824291685.seq -o /var/tmp/from_scwrl_824291685.pdb > /var/tmp/scwrl_824291685.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_824291685.pdb # conformation set from SCWRL output # naming current conformation Pcons_multi_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pcons_multi_TS4 looking for model 1 # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_203581631.pdb -s /var/tmp/to_scwrl_203581631.seq -o /var/tmp/from_scwrl_203581631.pdb > /var/tmp/scwrl_203581631.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_203581631.pdb # conformation set from SCWRL output # naming current conformation Pcons_multi_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pcons_multi_TS5 looking for model 1 # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_550178083.pdb -s /var/tmp/to_scwrl_550178083.seq -o /var/tmp/from_scwrl_550178083.pdb > /var/tmp/scwrl_550178083.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_550178083.pdb # conformation set from SCWRL output # naming current conformation Pcons_multi_TS5-scwrl # ReadConformPDB reading from PDB file servers/Phragment_TS1 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_326047887.pdb -s /var/tmp/to_scwrl_326047887.seq -o /var/tmp/from_scwrl_326047887.pdb > /var/tmp/scwrl_326047887.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_326047887.pdb # conformation set from SCWRL output # naming current conformation Phragment_TS1-scwrl # ReadConformPDB reading from PDB file servers/Phragment_TS2 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_320217111.pdb -s /var/tmp/to_scwrl_320217111.seq -o /var/tmp/from_scwrl_320217111.pdb > /var/tmp/scwrl_320217111.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_320217111.pdb # conformation set from SCWRL output # naming current conformation Phragment_TS2-scwrl # ReadConformPDB reading from PDB file servers/Phragment_TS3 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_494831859.pdb -s /var/tmp/to_scwrl_494831859.seq -o /var/tmp/from_scwrl_494831859.pdb > /var/tmp/scwrl_494831859.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_494831859.pdb # conformation set from SCWRL output # naming current conformation Phragment_TS3-scwrl # ReadConformPDB reading from PDB file servers/Phragment_TS4 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1282630171.pdb -s /var/tmp/to_scwrl_1282630171.seq -o /var/tmp/from_scwrl_1282630171.pdb > /var/tmp/scwrl_1282630171.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1282630171.pdb # conformation set from SCWRL output # naming current conformation Phragment_TS4-scwrl # ReadConformPDB reading from PDB file servers/Phragment_TS5 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_790507936.pdb -s /var/tmp/to_scwrl_790507936.seq -o /var/tmp/from_scwrl_790507936.pdb > /var/tmp/scwrl_790507936.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_790507936.pdb # conformation set from SCWRL output # naming current conformation Phragment_TS5-scwrl # ReadConformPDB reading from PDB file servers/Phyre2_TS1 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1175488730.pdb -s /var/tmp/to_scwrl_1175488730.seq -o /var/tmp/from_scwrl_1175488730.pdb > /var/tmp/scwrl_1175488730.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1175488730.pdb # conformation set from SCWRL output # naming current conformation Phyre2_TS1-scwrl # ReadConformPDB reading from PDB file servers/Phyre2_TS2 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_889507562.pdb -s /var/tmp/to_scwrl_889507562.seq -o /var/tmp/from_scwrl_889507562.pdb > /var/tmp/scwrl_889507562.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_889507562.pdb # conformation set from SCWRL output # naming current conformation Phyre2_TS2-scwrl # ReadConformPDB reading from PDB file servers/Phyre2_TS3 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1895768311.pdb -s /var/tmp/to_scwrl_1895768311.seq -o /var/tmp/from_scwrl_1895768311.pdb > /var/tmp/scwrl_1895768311.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1895768311.pdb # conformation set from SCWRL output # naming current conformation Phyre2_TS3-scwrl # ReadConformPDB reading from PDB file servers/Phyre2_TS4 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_719876401.pdb -s /var/tmp/to_scwrl_719876401.seq -o /var/tmp/from_scwrl_719876401.pdb > /var/tmp/scwrl_719876401.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_719876401.pdb # conformation set from SCWRL output # naming current conformation Phyre2_TS4-scwrl # ReadConformPDB reading from PDB file servers/Phyre2_TS5 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1201246964.pdb -s /var/tmp/to_scwrl_1201246964.seq -o /var/tmp/from_scwrl_1201246964.pdb > /var/tmp/scwrl_1201246964.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1201246964.pdb # conformation set from SCWRL output # naming current conformation Phyre2_TS5-scwrl # ReadConformPDB reading from PDB file servers/Phyre_de_novo_TS1 looking for model 1 # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_188261520.pdb -s /var/tmp/to_scwrl_188261520.seq -o /var/tmp/from_scwrl_188261520.pdb > /var/tmp/scwrl_188261520.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_188261520.pdb # conformation set from SCWRL output # naming current conformation Phyre_de_novo_TS1-scwrl # ReadConformPDB reading from PDB file servers/Phyre_de_novo_TS2 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1754210482.pdb -s /var/tmp/to_scwrl_1754210482.seq -o /var/tmp/from_scwrl_1754210482.pdb > /var/tmp/scwrl_1754210482.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1754210482.pdb # conformation set from SCWRL output # naming current conformation Phyre_de_novo_TS2-scwrl # ReadConformPDB reading from PDB file servers/Phyre_de_novo_TS3 looking for model 1 # Found a chain break before 72 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_546022743.pdb -s /var/tmp/to_scwrl_546022743.seq -o /var/tmp/from_scwrl_546022743.pdb > /var/tmp/scwrl_546022743.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_546022743.pdb # conformation set from SCWRL output # naming current conformation Phyre_de_novo_TS3-scwrl # ReadConformPDB reading from PDB file servers/Phyre_de_novo_TS4 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_786892415.pdb -s /var/tmp/to_scwrl_786892415.seq -o /var/tmp/from_scwrl_786892415.pdb > /var/tmp/scwrl_786892415.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_786892415.pdb # conformation set from SCWRL output # naming current conformation Phyre_de_novo_TS4-scwrl # ReadConformPDB reading from PDB file servers/Phyre_de_novo_TS5 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_743292803.pdb -s /var/tmp/to_scwrl_743292803.seq -o /var/tmp/from_scwrl_743292803.pdb > /var/tmp/scwrl_743292803.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_743292803.pdb # conformation set from SCWRL output # naming current conformation Phyre_de_novo_TS5-scwrl # ReadConformPDB reading from PDB file servers/Poing_TS1 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_936362410.pdb -s /var/tmp/to_scwrl_936362410.seq -o /var/tmp/from_scwrl_936362410.pdb > /var/tmp/scwrl_936362410.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_936362410.pdb # conformation set from SCWRL output # naming current conformation Poing_TS1-scwrl # ReadConformPDB reading from PDB file servers/Poing_TS2 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1963788919.pdb -s /var/tmp/to_scwrl_1963788919.seq -o /var/tmp/from_scwrl_1963788919.pdb > /var/tmp/scwrl_1963788919.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1963788919.pdb # conformation set from SCWRL output # naming current conformation Poing_TS2-scwrl # ReadConformPDB reading from PDB file servers/Poing_TS3 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_265954606.pdb -s /var/tmp/to_scwrl_265954606.seq -o /var/tmp/from_scwrl_265954606.pdb > /var/tmp/scwrl_265954606.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_265954606.pdb # conformation set from SCWRL output # naming current conformation Poing_TS3-scwrl # ReadConformPDB reading from PDB file servers/Poing_TS4 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1197205511.pdb -s /var/tmp/to_scwrl_1197205511.seq -o /var/tmp/from_scwrl_1197205511.pdb > /var/tmp/scwrl_1197205511.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1197205511.pdb # conformation set from SCWRL output # naming current conformation Poing_TS4-scwrl # ReadConformPDB reading from PDB file servers/Poing_TS5 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1527919030.pdb -s /var/tmp/to_scwrl_1527919030.seq -o /var/tmp/from_scwrl_1527919030.pdb > /var/tmp/scwrl_1527919030.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1527919030.pdb # conformation set from SCWRL output # naming current conformation Poing_TS5-scwrl # ReadConformPDB reading from PDB file servers/Pushchino_TS1 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1289827912.pdb -s /var/tmp/to_scwrl_1289827912.seq -o /var/tmp/from_scwrl_1289827912.pdb > /var/tmp/scwrl_1289827912.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1289827912.pdb # conformation set from SCWRL output # naming current conformation Pushchino_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS1 looking for model 1 # Found a chain break before 49 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_745009676.pdb -s /var/tmp/to_scwrl_745009676.seq -o /var/tmp/from_scwrl_745009676.pdb > /var/tmp/scwrl_745009676.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_745009676.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS2 looking for model 1 # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1022156737.pdb -s /var/tmp/to_scwrl_1022156737.seq -o /var/tmp/from_scwrl_1022156737.pdb > /var/tmp/scwrl_1022156737.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1022156737.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS3 looking for model 1 # Found a chain break before 48 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_559172451.pdb -s /var/tmp/to_scwrl_559172451.seq -o /var/tmp/from_scwrl_559172451.pdb > /var/tmp/scwrl_559172451.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_559172451.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS4 looking for model 1 # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_870623654.pdb -s /var/tmp/to_scwrl_870623654.seq -o /var/tmp/from_scwrl_870623654.pdb > /var/tmp/scwrl_870623654.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_870623654.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS4-scwrl # ReadConformPDB reading from PDB file servers/RBO-Proteus_TS1 looking for model 1 # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_2096431516.pdb -s /var/tmp/to_scwrl_2096431516.seq -o /var/tmp/from_scwrl_2096431516.pdb > /var/tmp/scwrl_2096431516.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2096431516.pdb # conformation set from SCWRL output # naming current conformation RBO-Proteus_TS1-scwrl # ReadConformPDB reading from PDB file servers/RBO-Proteus_TS2 looking for model 1 # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1661831664.pdb -s /var/tmp/to_scwrl_1661831664.seq -o /var/tmp/from_scwrl_1661831664.pdb > /var/tmp/scwrl_1661831664.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1661831664.pdb # conformation set from SCWRL output # naming current conformation RBO-Proteus_TS2-scwrl # ReadConformPDB reading from PDB file servers/RBO-Proteus_TS3 looking for model 1 # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1812386606.pdb -s /var/tmp/to_scwrl_1812386606.seq -o /var/tmp/from_scwrl_1812386606.pdb > /var/tmp/scwrl_1812386606.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1812386606.pdb # conformation set from SCWRL output # naming current conformation RBO-Proteus_TS3-scwrl # ReadConformPDB reading from PDB file servers/RBO-Proteus_TS4 looking for model 1 # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_773239554.pdb -s /var/tmp/to_scwrl_773239554.seq -o /var/tmp/from_scwrl_773239554.pdb > /var/tmp/scwrl_773239554.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_773239554.pdb # conformation set from SCWRL output # naming current conformation RBO-Proteus_TS4-scwrl # ReadConformPDB reading from PDB file servers/RBO-Proteus_TS5 looking for model 1 # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1865413295.pdb -s /var/tmp/to_scwrl_1865413295.seq -o /var/tmp/from_scwrl_1865413295.pdb > /var/tmp/scwrl_1865413295.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1865413295.pdb # conformation set from SCWRL output # naming current conformation RBO-Proteus_TS5-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02-server_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_215081042.pdb -s /var/tmp/to_scwrl_215081042.seq -o /var/tmp/from_scwrl_215081042.pdb > /var/tmp/scwrl_215081042.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_215081042.pdb # conformation set from SCWRL output # naming current conformation SAM-T02-server_AL1-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02-server_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1099287440.pdb -s /var/tmp/to_scwrl_1099287440.seq -o /var/tmp/from_scwrl_1099287440.pdb > /var/tmp/scwrl_1099287440.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1099287440.pdb # conformation set from SCWRL output # naming current conformation SAM-T02-server_AL2-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02-server_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_38146760.pdb -s /var/tmp/to_scwrl_38146760.seq -o /var/tmp/from_scwrl_38146760.pdb > /var/tmp/scwrl_38146760.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_38146760.pdb # conformation set from SCWRL output # naming current conformation SAM-T02-server_AL3-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02-server_AL4.pdb.gz looking for model 1 Skipped atom 75, because occupancy 1 <= existing 1.000 in servers/SAM-T02-server_AL4.pdb.gz Skipped atom 232, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02-server_AL4.pdb.gz # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_709912901.pdb -s /var/tmp/to_scwrl_709912901.seq -o /var/tmp/from_scwrl_709912901.pdb > /var/tmp/scwrl_709912901.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_709912901.pdb # conformation set from SCWRL output # naming current conformation SAM-T02-server_AL4-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02-server_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_234433966.pdb -s /var/tmp/to_scwrl_234433966.seq -o /var/tmp/from_scwrl_234433966.pdb > /var/tmp/scwrl_234433966.log Error: Couldn't open file /var/tmp/from_scwrl_234433966.pdb or /var/tmp/from_scwrl_234433966.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_234433966_b.pdb or decoys//var/tmp/from_scwrl_234433966_b.pdb.gz for input Trying /var/tmp/from_scwrl_234433966_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_234433966_b.pdb or /var/tmp/from_scwrl_234433966_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_234433966_a.pdb or decoys//var/tmp/from_scwrl_234433966_a.pdb.gz for input Trying /var/tmp/from_scwrl_234433966_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_234433966_a.pdb or /var/tmp/from_scwrl_234433966_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_234433966.pdb or /var/tmp/from_scwrl_234433966_b.pdb or /var/tmp/from_scwrl_234433966_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T02-server_AL5-scwrl # ReadConformPDB reading from PDB file servers/SAM-T06-server_TS1 looking for model 1 # Found a chain break before 71 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_828654696.pdb -s /var/tmp/to_scwrl_828654696.seq -o /var/tmp/from_scwrl_828654696.pdb > /var/tmp/scwrl_828654696.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_828654696.pdb # conformation set from SCWRL output # naming current conformation SAM-T06-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/SAM-T06-server_TS2 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1885401631.pdb -s /var/tmp/to_scwrl_1885401631.seq -o /var/tmp/from_scwrl_1885401631.pdb > /var/tmp/scwrl_1885401631.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1885401631.pdb # conformation set from SCWRL output # naming current conformation SAM-T06-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/SAM-T06-server_TS3 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1123941527.pdb -s /var/tmp/to_scwrl_1123941527.seq -o /var/tmp/from_scwrl_1123941527.pdb > /var/tmp/scwrl_1123941527.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1123941527.pdb # conformation set from SCWRL output # naming current conformation SAM-T06-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/SAM-T06-server_TS4 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_576939360.pdb -s /var/tmp/to_scwrl_576939360.seq -o /var/tmp/from_scwrl_576939360.pdb > /var/tmp/scwrl_576939360.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_576939360.pdb # conformation set from SCWRL output # naming current conformation SAM-T06-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/SAM-T06-server_TS5 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_457794385.pdb -s /var/tmp/to_scwrl_457794385.seq -o /var/tmp/from_scwrl_457794385.pdb > /var/tmp/scwrl_457794385.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_457794385.pdb # conformation set from SCWRL output # naming current conformation SAM-T06-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/SAM-T08-server_TS1 looking for model 1 # Found a chain break before 48 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_177704846.pdb -s /var/tmp/to_scwrl_177704846.seq -o /var/tmp/from_scwrl_177704846.pdb > /var/tmp/scwrl_177704846.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_177704846.pdb # conformation set from SCWRL output # naming current conformation SAM-T08-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/SAM-T08-server_TS2 looking for model 1 # Found a chain break before 58 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_765200880.pdb -s /var/tmp/to_scwrl_765200880.seq -o /var/tmp/from_scwrl_765200880.pdb > /var/tmp/scwrl_765200880.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_765200880.pdb # conformation set from SCWRL output # naming current conformation SAM-T08-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/SAM-T08-server_TS3 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_64521221.pdb -s /var/tmp/to_scwrl_64521221.seq -o /var/tmp/from_scwrl_64521221.pdb > /var/tmp/scwrl_64521221.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_64521221.pdb # conformation set from SCWRL output # naming current conformation SAM-T08-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/SAM-T08-server_TS4 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_723727589.pdb -s /var/tmp/to_scwrl_723727589.seq -o /var/tmp/from_scwrl_723727589.pdb > /var/tmp/scwrl_723727589.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_723727589.pdb # conformation set from SCWRL output # naming current conformation SAM-T08-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/SAM-T08-server_TS5 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1552093295.pdb -s /var/tmp/to_scwrl_1552093295.seq -o /var/tmp/from_scwrl_1552093295.pdb > /var/tmp/scwrl_1552093295.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1552093295.pdb # conformation set from SCWRL output # naming current conformation SAM-T08-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1 looking for model 1 # Found a chain break before 69 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_807814024.pdb -s /var/tmp/to_scwrl_807814024.seq -o /var/tmp/from_scwrl_807814024.pdb > /var/tmp/scwrl_807814024.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_807814024.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2 looking for model 1 # Found a chain break before 72 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1660089998.pdb -s /var/tmp/to_scwrl_1660089998.seq -o /var/tmp/from_scwrl_1660089998.pdb > /var/tmp/scwrl_1660089998.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1660089998.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3 looking for model 1 # Found a chain break before 69 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1368398567.pdb -s /var/tmp/to_scwrl_1368398567.seq -o /var/tmp/from_scwrl_1368398567.pdb > /var/tmp/scwrl_1368398567.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1368398567.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4 looking for model 1 # Found a chain break before 63 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1073768630.pdb -s /var/tmp/to_scwrl_1073768630.seq -o /var/tmp/from_scwrl_1073768630.pdb > /var/tmp/scwrl_1073768630.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1073768630.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5 looking for model 1 # Found a chain break before 56 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_709811864.pdb -s /var/tmp/to_scwrl_709811864.seq -o /var/tmp/from_scwrl_709811864.pdb > /var/tmp/scwrl_709811864.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_709811864.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/circle_TS1 looking for model 1 # Found a chain break before 72 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_748833951.pdb -s /var/tmp/to_scwrl_748833951.seq -o /var/tmp/from_scwrl_748833951.pdb > /var/tmp/scwrl_748833951.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_748833951.pdb # conformation set from SCWRL output # naming current conformation circle_TS1-scwrl # ReadConformPDB reading from PDB file servers/circle_TS2 looking for model 1 # Found a chain break before 70 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_216112896.pdb -s /var/tmp/to_scwrl_216112896.seq -o /var/tmp/from_scwrl_216112896.pdb > /var/tmp/scwrl_216112896.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_216112896.pdb # conformation set from SCWRL output # naming current conformation circle_TS2-scwrl # ReadConformPDB reading from PDB file servers/circle_TS3 looking for model 1 # Found a chain break before 71 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1454821539.pdb -s /var/tmp/to_scwrl_1454821539.seq -o /var/tmp/from_scwrl_1454821539.pdb > /var/tmp/scwrl_1454821539.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1454821539.pdb # conformation set from SCWRL output # naming current conformation circle_TS3-scwrl # ReadConformPDB reading from PDB file servers/circle_TS4 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1770990687.pdb -s /var/tmp/to_scwrl_1770990687.seq -o /var/tmp/from_scwrl_1770990687.pdb > /var/tmp/scwrl_1770990687.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1770990687.pdb # conformation set from SCWRL output # naming current conformation circle_TS4-scwrl # ReadConformPDB reading from PDB file servers/circle_TS5 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_775285348.pdb -s /var/tmp/to_scwrl_775285348.seq -o /var/tmp/from_scwrl_775285348.pdb > /var/tmp/scwrl_775285348.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_775285348.pdb # conformation set from SCWRL output # naming current conformation circle_TS5-scwrl # ReadConformPDB reading from PDB file servers/fais-server_TS1 looking for model 1 # Found a chain break before 48 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_177961546.pdb -s /var/tmp/to_scwrl_177961546.seq -o /var/tmp/from_scwrl_177961546.pdb > /var/tmp/scwrl_177961546.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_177961546.pdb # conformation set from SCWRL output # naming current conformation fais-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/fais-server_TS2 looking for model 1 # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1719938556.pdb -s /var/tmp/to_scwrl_1719938556.seq -o /var/tmp/from_scwrl_1719938556.pdb > /var/tmp/scwrl_1719938556.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1719938556.pdb # conformation set from SCWRL output # naming current conformation fais-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/fais-server_TS3 looking for model 1 # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_289633365.pdb -s /var/tmp/to_scwrl_289633365.seq -o /var/tmp/from_scwrl_289633365.pdb > /var/tmp/scwrl_289633365.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_289633365.pdb # conformation set from SCWRL output # naming current conformation fais-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/fais-server_TS4 looking for model 1 # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1990348152.pdb -s /var/tmp/to_scwrl_1990348152.seq -o /var/tmp/from_scwrl_1990348152.pdb > /var/tmp/scwrl_1990348152.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1990348152.pdb # conformation set from SCWRL output # naming current conformation fais-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/fais-server_TS5 looking for model 1 # Found a chain break before 17 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_345694463.pdb -s /var/tmp/to_scwrl_345694463.seq -o /var/tmp/from_scwrl_345694463.pdb > /var/tmp/scwrl_345694463.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_345694463.pdb # conformation set from SCWRL output # naming current conformation fais-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/forecast_TS1 looking for model 1 # Found a chain break before 48 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_7563014.pdb -s /var/tmp/to_scwrl_7563014.seq -o /var/tmp/from_scwrl_7563014.pdb > /var/tmp/scwrl_7563014.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_7563014.pdb # conformation set from SCWRL output # naming current conformation forecast_TS1-scwrl # ReadConformPDB reading from PDB file servers/forecast_TS2 looking for model 1 # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_57945547.pdb -s /var/tmp/to_scwrl_57945547.seq -o /var/tmp/from_scwrl_57945547.pdb > /var/tmp/scwrl_57945547.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_57945547.pdb # conformation set from SCWRL output # naming current conformation forecast_TS2-scwrl # ReadConformPDB reading from PDB file servers/forecast_TS3 looking for model 1 # Found a chain break before 49 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1444981904.pdb -s /var/tmp/to_scwrl_1444981904.seq -o /var/tmp/from_scwrl_1444981904.pdb > /var/tmp/scwrl_1444981904.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1444981904.pdb # conformation set from SCWRL output # naming current conformation forecast_TS3-scwrl # ReadConformPDB reading from PDB file servers/forecast_TS4 looking for model 1 # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_45709774.pdb -s /var/tmp/to_scwrl_45709774.seq -o /var/tmp/from_scwrl_45709774.pdb > /var/tmp/scwrl_45709774.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_45709774.pdb # conformation set from SCWRL output # naming current conformation forecast_TS4-scwrl # ReadConformPDB reading from PDB file servers/forecast_TS5 looking for model 1 # Found a chain break before 34 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_767858448.pdb -s /var/tmp/to_scwrl_767858448.seq -o /var/tmp/from_scwrl_767858448.pdb > /var/tmp/scwrl_767858448.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_767858448.pdb # conformation set from SCWRL output # naming current conformation forecast_TS5-scwrl # ReadConformPDB reading from PDB file servers/huber-torda-server_TS1 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1679415870.pdb -s /var/tmp/to_scwrl_1679415870.seq -o /var/tmp/from_scwrl_1679415870.pdb > /var/tmp/scwrl_1679415870.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1679415870.pdb # conformation set from SCWRL output # naming current conformation huber-torda-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/huber-torda-server_TS2 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_874364470.pdb -s /var/tmp/to_scwrl_874364470.seq -o /var/tmp/from_scwrl_874364470.pdb > /var/tmp/scwrl_874364470.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_874364470.pdb # conformation set from SCWRL output # naming current conformation huber-torda-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/huber-torda-server_TS3 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_505776432.pdb -s /var/tmp/to_scwrl_505776432.seq -o /var/tmp/from_scwrl_505776432.pdb > /var/tmp/scwrl_505776432.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_505776432.pdb # conformation set from SCWRL output # naming current conformation huber-torda-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/huber-torda-server_TS4 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_655873751.pdb -s /var/tmp/to_scwrl_655873751.seq -o /var/tmp/from_scwrl_655873751.pdb > /var/tmp/scwrl_655873751.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_655873751.pdb # conformation set from SCWRL output # naming current conformation huber-torda-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/huber-torda-server_TS5 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1451303830.pdb -s /var/tmp/to_scwrl_1451303830.seq -o /var/tmp/from_scwrl_1451303830.pdb > /var/tmp/scwrl_1451303830.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1451303830.pdb # conformation set from SCWRL output # naming current conformation huber-torda-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS1 looking for model 1 # Found a chain break before 69 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_963570818.pdb -s /var/tmp/to_scwrl_963570818.seq -o /var/tmp/from_scwrl_963570818.pdb > /var/tmp/scwrl_963570818.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_963570818.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS2 looking for model 1 # Found a chain break before 70 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_833578597.pdb -s /var/tmp/to_scwrl_833578597.seq -o /var/tmp/from_scwrl_833578597.pdb > /var/tmp/scwrl_833578597.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_833578597.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS3 looking for model 1 # Found a chain break before 69 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_69021063.pdb -s /var/tmp/to_scwrl_69021063.seq -o /var/tmp/from_scwrl_69021063.pdb > /var/tmp/scwrl_69021063.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_69021063.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS4 looking for model 1 # Found a chain break before 69 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1028092039.pdb -s /var/tmp/to_scwrl_1028092039.seq -o /var/tmp/from_scwrl_1028092039.pdb > /var/tmp/scwrl_1028092039.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1028092039.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS5 looking for model 1 # Found a chain break before 65 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1557306186.pdb -s /var/tmp/to_scwrl_1557306186.seq -o /var/tmp/from_scwrl_1557306186.pdb > /var/tmp/scwrl_1557306186.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1557306186.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/mGenTHREADER_TS1 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1621114358.pdb -s /var/tmp/to_scwrl_1621114358.seq -o /var/tmp/from_scwrl_1621114358.pdb > /var/tmp/scwrl_1621114358.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1621114358.pdb # conformation set from SCWRL output # naming current conformation mGenTHREADER_TS1-scwrl # ReadConformPDB reading from PDB file servers/mahmood-torda-server_TS1 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1835906062.pdb -s /var/tmp/to_scwrl_1835906062.seq -o /var/tmp/from_scwrl_1835906062.pdb > /var/tmp/scwrl_1835906062.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1835906062.pdb # conformation set from SCWRL output # naming current conformation mahmood-torda-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/mahmood-torda-server_TS2 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1069912538.pdb -s /var/tmp/to_scwrl_1069912538.seq -o /var/tmp/from_scwrl_1069912538.pdb > /var/tmp/scwrl_1069912538.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1069912538.pdb # conformation set from SCWRL output # naming current conformation mahmood-torda-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/mahmood-torda-server_TS3 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_842029280.pdb -s /var/tmp/to_scwrl_842029280.seq -o /var/tmp/from_scwrl_842029280.pdb > /var/tmp/scwrl_842029280.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_842029280.pdb # conformation set from SCWRL output # naming current conformation mahmood-torda-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/mahmood-torda-server_TS4 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_762191046.pdb -s /var/tmp/to_scwrl_762191046.seq -o /var/tmp/from_scwrl_762191046.pdb > /var/tmp/scwrl_762191046.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_762191046.pdb # conformation set from SCWRL output # naming current conformation mahmood-torda-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/mahmood-torda-server_TS5 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1779724401.pdb -s /var/tmp/to_scwrl_1779724401.seq -o /var/tmp/from_scwrl_1779724401.pdb > /var/tmp/scwrl_1779724401.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1779724401.pdb # conformation set from SCWRL output # naming current conformation mahmood-torda-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/mariner1_TS1 looking for model 1 # Found a chain break before 49 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1590863230.pdb -s /var/tmp/to_scwrl_1590863230.seq -o /var/tmp/from_scwrl_1590863230.pdb > /var/tmp/scwrl_1590863230.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1590863230.pdb # conformation set from SCWRL output # naming current conformation mariner1_TS1-scwrl # ReadConformPDB reading from PDB file servers/mariner1_TS2 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_978303943.pdb -s /var/tmp/to_scwrl_978303943.seq -o /var/tmp/from_scwrl_978303943.pdb > /var/tmp/scwrl_978303943.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_978303943.pdb # conformation set from SCWRL output # naming current conformation mariner1_TS2-scwrl # ReadConformPDB reading from PDB file servers/mariner1_TS3 looking for model 1 # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1087062293.pdb -s /var/tmp/to_scwrl_1087062293.seq -o /var/tmp/from_scwrl_1087062293.pdb > /var/tmp/scwrl_1087062293.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1087062293.pdb # conformation set from SCWRL output # naming current conformation mariner1_TS3-scwrl # ReadConformPDB reading from PDB file servers/mariner1_TS4 looking for model 1 # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1214370271.pdb -s /var/tmp/to_scwrl_1214370271.seq -o /var/tmp/from_scwrl_1214370271.pdb > /var/tmp/scwrl_1214370271.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1214370271.pdb # conformation set from SCWRL output # naming current conformation mariner1_TS4-scwrl # ReadConformPDB reading from PDB file servers/mariner1_TS5 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1753589290.pdb -s /var/tmp/to_scwrl_1753589290.seq -o /var/tmp/from_scwrl_1753589290.pdb > /var/tmp/scwrl_1753589290.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1753589290.pdb # conformation set from SCWRL output # naming current conformation mariner1_TS5-scwrl # ReadConformPDB reading from PDB file servers/nFOLD3_TS1 looking for model 1 # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1265023839.pdb -s /var/tmp/to_scwrl_1265023839.seq -o /var/tmp/from_scwrl_1265023839.pdb > /var/tmp/scwrl_1265023839.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1265023839.pdb # conformation set from SCWRL output # naming current conformation nFOLD3_TS1-scwrl # ReadConformPDB reading from PDB file servers/nFOLD3_TS2 looking for model 1 # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_786825181.pdb -s /var/tmp/to_scwrl_786825181.seq -o /var/tmp/from_scwrl_786825181.pdb > /var/tmp/scwrl_786825181.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_786825181.pdb # conformation set from SCWRL output # naming current conformation nFOLD3_TS2-scwrl # ReadConformPDB reading from PDB file servers/nFOLD3_TS3 looking for model 1 # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_2043222655.pdb -s /var/tmp/to_scwrl_2043222655.seq -o /var/tmp/from_scwrl_2043222655.pdb > /var/tmp/scwrl_2043222655.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2043222655.pdb # conformation set from SCWRL output # naming current conformation nFOLD3_TS3-scwrl # ReadConformPDB reading from PDB file servers/nFOLD3_TS4 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1107888344.pdb -s /var/tmp/to_scwrl_1107888344.seq -o /var/tmp/from_scwrl_1107888344.pdb > /var/tmp/scwrl_1107888344.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1107888344.pdb # conformation set from SCWRL output # naming current conformation nFOLD3_TS4-scwrl # ReadConformPDB reading from PDB file servers/nFOLD3_TS5 looking for model 1 # Found a chain break before 50 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1132519644.pdb -s /var/tmp/to_scwrl_1132519644.seq -o /var/tmp/from_scwrl_1132519644.pdb > /var/tmp/scwrl_1132519644.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1132519644.pdb # conformation set from SCWRL output # naming current conformation nFOLD3_TS5-scwrl # ReadConformPDB reading from PDB file servers/panther_server_TS1 looking for model 1 # Found a chain break before 65 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_2050785669.pdb -s /var/tmp/to_scwrl_2050785669.seq -o /var/tmp/from_scwrl_2050785669.pdb > /var/tmp/scwrl_2050785669.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2050785669.pdb # conformation set from SCWRL output # naming current conformation panther_server_TS1-scwrl # ReadConformPDB reading from PDB file servers/panther_server_TS2 looking for model 1 # Found a chain break before 70 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1165833891.pdb -s /var/tmp/to_scwrl_1165833891.seq -o /var/tmp/from_scwrl_1165833891.pdb > /var/tmp/scwrl_1165833891.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1165833891.pdb # conformation set from SCWRL output # naming current conformation panther_server_TS2-scwrl # ReadConformPDB reading from PDB file servers/panther_server_TS3 looking for model 1 # Found a chain break before 62 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_430017902.pdb -s /var/tmp/to_scwrl_430017902.seq -o /var/tmp/from_scwrl_430017902.pdb > /var/tmp/scwrl_430017902.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_430017902.pdb # conformation set from SCWRL output # naming current conformation panther_server_TS3-scwrl # ReadConformPDB reading from PDB file servers/panther_server_TS4 looking for model 1 # Found a chain break before 69 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_2096495443.pdb -s /var/tmp/to_scwrl_2096495443.seq -o /var/tmp/from_scwrl_2096495443.pdb > /var/tmp/scwrl_2096495443.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2096495443.pdb # conformation set from SCWRL output # naming current conformation panther_server_TS4-scwrl # ReadConformPDB reading from PDB file servers/panther_server_TS5 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1933692339.pdb -s /var/tmp/to_scwrl_1933692339.seq -o /var/tmp/from_scwrl_1933692339.pdb > /var/tmp/scwrl_1933692339.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1933692339.pdb # conformation set from SCWRL output # naming current conformation panther_server_TS5-scwrl # ReadConformPDB reading from PDB file servers/pipe_int_TS1 looking for model 1 # Found a chain break before 49 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_2109433772.pdb -s /var/tmp/to_scwrl_2109433772.seq -o /var/tmp/from_scwrl_2109433772.pdb > /var/tmp/scwrl_2109433772.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2109433772.pdb # conformation set from SCWRL output # naming current conformation pipe_int_TS1-scwrl # ReadConformPDB reading from PDB file servers/pro-sp3-TASSER_TS1 looking for model 1 # Found a chain break before 71 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_823376267.pdb -s /var/tmp/to_scwrl_823376267.seq -o /var/tmp/from_scwrl_823376267.pdb > /var/tmp/scwrl_823376267.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_823376267.pdb # conformation set from SCWRL output # naming current conformation pro-sp3-TASSER_TS1-scwrl # ReadConformPDB reading from PDB file servers/pro-sp3-TASSER_TS2 looking for model 1 # Found a chain break before 72 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_291985125.pdb -s /var/tmp/to_scwrl_291985125.seq -o /var/tmp/from_scwrl_291985125.pdb > /var/tmp/scwrl_291985125.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_291985125.pdb # conformation set from SCWRL output # naming current conformation pro-sp3-TASSER_TS2-scwrl # ReadConformPDB reading from PDB file servers/pro-sp3-TASSER_TS3 looking for model 1 # Found a chain break before 72 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_617823876.pdb -s /var/tmp/to_scwrl_617823876.seq -o /var/tmp/from_scwrl_617823876.pdb > /var/tmp/scwrl_617823876.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_617823876.pdb # conformation set from SCWRL output # naming current conformation pro-sp3-TASSER_TS3-scwrl # ReadConformPDB reading from PDB file servers/pro-sp3-TASSER_TS4 looking for model 1 # Found a chain break before 72 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_127196450.pdb -s /var/tmp/to_scwrl_127196450.seq -o /var/tmp/from_scwrl_127196450.pdb > /var/tmp/scwrl_127196450.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_127196450.pdb # conformation set from SCWRL output # naming current conformation pro-sp3-TASSER_TS4-scwrl # ReadConformPDB reading from PDB file servers/pro-sp3-TASSER_TS5 looking for model 1 # Found a chain break before 72 # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1255555942.pdb -s /var/tmp/to_scwrl_1255555942.seq -o /var/tmp/from_scwrl_1255555942.pdb > /var/tmp/scwrl_1255555942.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1255555942.pdb # conformation set from SCWRL output # naming current conformation pro-sp3-TASSER_TS5-scwrl # ReadConformPDB reading from PDB file servers/rehtnap_TS1 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1451402473.pdb -s /var/tmp/to_scwrl_1451402473.seq -o /var/tmp/from_scwrl_1451402473.pdb > /var/tmp/scwrl_1451402473.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1451402473.pdb # conformation set from SCWRL output # naming current conformation rehtnap_TS1-scwrl # ReadConformPDB reading from PDB file servers/rehtnap_TS2 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_196217513.pdb -s /var/tmp/to_scwrl_196217513.seq -o /var/tmp/from_scwrl_196217513.pdb > /var/tmp/scwrl_196217513.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_196217513.pdb # conformation set from SCWRL output # naming current conformation rehtnap_TS2-scwrl # ReadConformPDB reading from PDB file servers/rehtnap_TS3 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_136164334.pdb -s /var/tmp/to_scwrl_136164334.seq -o /var/tmp/from_scwrl_136164334.pdb > /var/tmp/scwrl_136164334.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_136164334.pdb # conformation set from SCWRL output # naming current conformation rehtnap_TS3-scwrl # ReadConformPDB reading from PDB file servers/schenk-torda-server_TS1 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_861225013.pdb -s /var/tmp/to_scwrl_861225013.seq -o /var/tmp/from_scwrl_861225013.pdb > /var/tmp/scwrl_861225013.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_861225013.pdb # conformation set from SCWRL output # naming current conformation schenk-torda-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/schenk-torda-server_TS2 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1817331872.pdb -s /var/tmp/to_scwrl_1817331872.seq -o /var/tmp/from_scwrl_1817331872.pdb > /var/tmp/scwrl_1817331872.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1817331872.pdb # conformation set from SCWRL output # naming current conformation schenk-torda-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/schenk-torda-server_TS3 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1972070396.pdb -s /var/tmp/to_scwrl_1972070396.seq -o /var/tmp/from_scwrl_1972070396.pdb > /var/tmp/scwrl_1972070396.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1972070396.pdb # conformation set from SCWRL output # naming current conformation schenk-torda-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/schenk-torda-server_TS4 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_1931137550.pdb -s /var/tmp/to_scwrl_1931137550.seq -o /var/tmp/from_scwrl_1931137550.pdb > /var/tmp/scwrl_1931137550.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1931137550.pdb # conformation set from SCWRL output # naming current conformation schenk-torda-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/schenk-torda-server_TS5 looking for model 1 # WARNING: incomplete conformation T0492 can't currently be optimized by undertaker # copying to AlignedFragments data structure # request to SCWRL produces command: ulimit -t 66 ; scwrl3 -i /var/tmp/to_scwrl_511877505.pdb -s /var/tmp/to_scwrl_511877505.seq -o /var/tmp/from_scwrl_511877505.pdb > /var/tmp/scwrl_511877505.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_511877505.pdb # conformation set from SCWRL output # naming current conformation schenk-torda-server_TS5-scwrl # command:CPU_time= 19.974 sec, elapsed time= 160.922 sec. # command:# Prefix for output files set to decoys/ # command:# Will now start reporting costs to decoys/evaluate.rdb # command:# CostConform Warning: Couldn't open file decoys//projects/compbio/experiments/undertaker/spots/near-backbone-center.spot or decoys//projects/compbio/experiments/undertaker/spots/near-backbone-center.spot.gz for input Trying /projects/compbio/experiments/undertaker/spots/near-backbone-center.spot # Reading spots from /projects/compbio/experiments/undertaker/spots/near-backbone-center.spot schenk-torda-server_TS5-scwrl costs 0.000 real_cost = 290.791 schenk-torda-server_TS5 costs 0.000 real_cost = 318.143 schenk-torda-server_TS4-scwrl costs 0.000 real_cost = 249.705 schenk-torda-server_TS4 costs 0.000 real_cost = 274.464 schenk-torda-server_TS3-scwrl costs 0.000 real_cost = 294.175 schenk-torda-server_TS3 costs 0.000 real_cost = 317.169 schenk-torda-server_TS2-scwrl costs 0.000 real_cost = 305.470 schenk-torda-server_TS2 costs 0.000 real_cost = 341.514 schenk-torda-server_TS1-scwrl costs 0.000 real_cost = 278.119 schenk-torda-server_TS1 costs 0.000 real_cost = 313.368 rehtnap_TS3-scwrl costs 0.000 real_cost = -13.219 rehtnap_TS3 costs 0.000 real_cost = 2.473 rehtnap_TS2-scwrl costs 0.000 real_cost = -21.882 rehtnap_TS2 costs 0.000 real_cost = 6.314 rehtnap_TS1-scwrl costs 0.000 real_cost = -13.219 rehtnap_TS1 costs 0.000 real_cost = 2.473 pro-sp3-TASSER_TS5-scwrl costs 0.000 real_cost = -152.171 pro-sp3-TASSER_TS5 costs 0.000 real_cost = -145.367 pro-sp3-TASSER_TS4-scwrl costs 0.000 real_cost = -145.147 pro-sp3-TASSER_TS4 costs 0.000 real_cost = -146.196 pro-sp3-TASSER_TS3-scwrl costs 0.000 real_cost = -174.608 pro-sp3-TASSER_TS3 costs 0.000 real_cost = -164.515 pro-sp3-TASSER_TS2-scwrl costs 0.000 real_cost = -146.366 pro-sp3-TASSER_TS2 costs 0.000 real_cost = -147.053 pro-sp3-TASSER_TS1-scwrl costs 0.000 real_cost = -14.839 pro-sp3-TASSER_TS1 costs 0.000 real_cost = -9.694 pipe_int_TS1-scwrl costs 0.000 real_cost = -37.489 pipe_int_TS1 costs 0.000 real_cost = -29.961 panther_server_TS5-scwrl costs 0.000 real_cost = 198.798 panther_server_TS5 costs 0.000 real_cost = 225.023 panther_server_TS4-scwrl costs 0.000 real_cost = 22.987 panther_server_TS4 costs 0.000 real_cost = 64.421 panther_server_TS3-scwrl costs 0.000 real_cost = 189.623 panther_server_TS3 costs 0.000 real_cost = 200.617 panther_server_TS2-scwrl costs 0.000 real_cost = -28.407 panther_server_TS2 costs 0.000 real_cost = 0.844 panther_server_TS1-scwrl costs 0.000 real_cost = 16.107 panther_server_TS1 costs 0.000 real_cost = 44.470 nFOLD3_TS5-scwrl costs 0.000 real_cost = -76.847 nFOLD3_TS5 costs 0.000 real_cost = -62.710 nFOLD3_TS4-scwrl costs 0.000 real_cost = 57.302 nFOLD3_TS4 costs 0.000 real_cost = 98.580 nFOLD3_TS3-scwrl costs 0.000 real_cost = -12.803 nFOLD3_TS3 costs 0.000 real_cost = -27.934 nFOLD3_TS2-scwrl costs 0.000 real_cost = -87.514 nFOLD3_TS2 costs 0.000 real_cost = -94.333 nFOLD3_TS1-scwrl costs 0.000 real_cost = -87.514 nFOLD3_TS1 costs 0.000 real_cost = -94.333 mariner1_TS5-scwrl costs 0.000 real_cost = 297.544 mariner1_TS5 costs 0.000 real_cost = 297.544 mariner1_TS4-scwrl costs 0.000 real_cost = -38.628 mariner1_TS4 costs 0.000 real_cost = -38.628 mariner1_TS3-scwrl costs 0.000 real_cost = -107.904 mariner1_TS3 costs 0.000 real_cost = -107.904 mariner1_TS2-scwrl costs 0.000 real_cost = 177.133 mariner1_TS2 costs 0.000 real_cost = 235.876 mariner1_TS1-scwrl costs 0.000 real_cost = -104.893 mariner1_TS1 costs 0.000 real_cost = -104.893 mahmood-torda-server_TS5-scwrl costs 0.000 real_cost = 293.080 mahmood-torda-server_TS5 costs 0.000 real_cost = 322.661 mahmood-torda-server_TS4-scwrl costs 0.000 real_cost = 284.206 mahmood-torda-server_TS4 costs 0.000 real_cost = 319.521 mahmood-torda-server_TS3-scwrl costs 0.000 real_cost = 366.176 mahmood-torda-server_TS3 costs 0.000 real_cost = 407.312 mahmood-torda-server_TS2-scwrl costs 0.000 real_cost = 291.071 mahmood-torda-server_TS2 costs 0.000 real_cost = 329.294 mahmood-torda-server_TS1-scwrl costs 0.000 real_cost = 272.677 mahmood-torda-server_TS1 costs 0.000 real_cost = 304.137 mGenTHREADER_TS1-scwrl costs 0.000 real_cost = -66.834 mGenTHREADER_TS1 costs 0.000 real_cost = -39.135 keasar-server_TS5-scwrl costs 0.000 real_cost = -58.194 keasar-server_TS5 costs 0.000 real_cost = -59.660 keasar-server_TS4-scwrl costs 0.000 real_cost = -17.483 keasar-server_TS4 costs 0.000 real_cost = -13.984 keasar-server_TS3-scwrl costs 0.000 real_cost = -25.995 keasar-server_TS3 costs 0.000 real_cost = -21.836 keasar-server_TS2-scwrl costs 0.000 real_cost = -22.333 keasar-server_TS2 costs 0.000 real_cost = -11.407 keasar-server_TS1-scwrl costs 0.000 real_cost = -31.588 keasar-server_TS1 costs 0.000 real_cost = -30.431 huber-torda-server_TS5-scwrl costs 0.000 real_cost = 275.196 huber-torda-server_TS5 costs 0.000 real_cost = 297.218 huber-torda-server_TS4-scwrl costs 0.000 real_cost = 278.056 huber-torda-server_TS4 costs 0.000 real_cost = 310.451 huber-torda-server_TS3-scwrl costs 0.000 real_cost = -55.928 huber-torda-server_TS3 costs 0.000 real_cost = -22.000 huber-torda-server_TS2-scwrl costs 0.000 real_cost = -74.433 huber-torda-server_TS2 costs 0.000 real_cost = -48.900 huber-torda-server_TS1-scwrl costs 0.000 real_cost = -66.715 huber-torda-server_TS1 costs 0.000 real_cost = -39.074 forecast_TS5-scwrl costs 0.000 real_cost = 295.705 forecast_TS5 costs 0.000 real_cost = 283.531 forecast_TS4-scwrl costs 0.000 real_cost = 239.226 forecast_TS4 costs 0.000 real_cost = 238.556 forecast_TS3-scwrl costs 0.000 real_cost = -50.884 forecast_TS3 costs 0.000 real_cost = -42.606 forecast_TS2-scwrl costs 0.000 real_cost = -63.253 forecast_TS2 costs 0.000 real_cost = -54.412 forecast_TS1-scwrl costs 0.000 real_cost = -42.325 forecast_TS1 costs 0.000 real_cost = -33.598 fais-server_TS5-scwrl costs 0.000 real_cost = 47.844 fais-server_TS5 costs 0.000 real_cost = 49.165 fais-server_TS4-scwrl costs 0.000 real_cost = -43.017 fais-server_TS4 costs 0.000 real_cost = -32.055 fais-server_TS3-scwrl costs 0.000 real_cost = -27.564 fais-server_TS3 costs 0.000 real_cost = -23.196 fais-server_TS2-scwrl costs 0.000 real_cost = -40.915 fais-server_TS2 costs 0.000 real_cost = -29.695 fais-server_TS1-scwrl costs 0.000 real_cost = -35.718 fais-server_TS1 costs 0.000 real_cost = -23.238 circle_TS5-scwrl costs 0.000 real_cost = -70.492 circle_TS5 costs 0.000 real_cost = -43.862 circle_TS4-scwrl costs 0.000 real_cost = -70.492 circle_TS4 costs 0.000 real_cost = -43.862 circle_TS3-scwrl costs 0.000 real_cost = -73.679 circle_TS3 costs 0.000 real_cost = -71.044 circle_TS2-scwrl costs 0.000 real_cost = -67.433 circle_TS2 costs 0.000 real_cost = -55.707 circle_TS1-scwrl costs 0.000 real_cost = -88.487 circle_TS1 costs 0.000 real_cost = -80.114 Zhang-Server_TS5-scwrl costs 0.000 real_cost = -115.277 Zhang-Server_TS5 costs 0.000 real_cost = -115.277 Zhang-Server_TS4-scwrl costs 0.000 real_cost = -120.897 Zhang-Server_TS4 costs 0.000 real_cost = -120.897 Zhang-Server_TS3-scwrl costs 0.000 real_cost = -45.340 Zhang-Server_TS3 costs 0.000 real_cost = -45.340 Zhang-Server_TS2-scwrl costs 0.000 real_cost = -157.835 Zhang-Server_TS2 costs 0.000 real_cost = -157.835 Zhang-Server_TS1-scwrl costs 0.000 real_cost = -36.294 Zhang-Server_TS1 costs 0.000 real_cost = -36.294 SAM-T08-server_TS5-scwrl costs 0.000 real_cost = -88.194 SAM-T08-server_TS5 costs 0.000 real_cost = -92.575 SAM-T08-server_TS4-scwrl costs 0.000 real_cost = -58.773 SAM-T08-server_TS4 costs 0.000 real_cost = -64.468 SAM-T08-server_TS3-scwrl costs 0.000 real_cost = -87.832 SAM-T08-server_TS3 costs 0.000 real_cost = -91.507 SAM-T08-server_TS2-scwrl costs 0.000 real_cost = -98.653 SAM-T08-server_TS2 costs 0.000 real_cost = -98.645 SAM-T08-server_TS1-scwrl costs 0.000 real_cost = -119.608 SAM-T08-server_TS1 costs 0.000 real_cost = -120.664 SAM-T06-server_TS5-scwrl costs 0.000 real_cost = 98.708 SAM-T06-server_TS5 costs 0.000 real_cost = 78.082 SAM-T06-server_TS4-scwrl costs 0.000 real_cost = -65.157 SAM-T06-server_TS4 costs 0.000 real_cost = -89.225 SAM-T06-server_TS3-scwrl costs 0.000 real_cost = -58.538 SAM-T06-server_TS3 costs 0.000 real_cost = -61.545 SAM-T06-server_TS2-scwrl costs 0.000 real_cost = -70.306 SAM-T06-server_TS2 costs 0.000 real_cost = -94.648 SAM-T06-server_TS1-scwrl costs 0.000 real_cost = -120.518 SAM-T06-server_TS1 costs 0.000 real_cost = -117.287 SAM-T02-server_AL5-scwrl costs 0.000 real_cost = 108.873 SAM-T02-server_AL4-scwrl costs 0.000 real_cost = 46.681 SAM-T02-server_AL4 costs 0.000 real_cost = 74.046 SAM-T02-server_AL3-scwrl costs 0.000 real_cost = 8.709 SAM-T02-server_AL3 costs 0.000 real_cost = 51.145 SAM-T02-server_AL2-scwrl costs 0.000 real_cost = -59.740 SAM-T02-server_AL2 costs 0.000 real_cost = -30.154 SAM-T02-server_AL1-scwrl costs 0.000 real_cost = -51.977 SAM-T02-server_AL1 costs 0.000 real_cost = -24.602 RBO-Proteus_TS5-scwrl costs 0.000 real_cost = 107.371 RBO-Proteus_TS5 costs 0.000 real_cost = 110.100 RBO-Proteus_TS4-scwrl costs 0.000 real_cost = 84.930 RBO-Proteus_TS4 costs 0.000 real_cost = 84.753 RBO-Proteus_TS3-scwrl costs 0.000 real_cost = 67.403 RBO-Proteus_TS3 costs 0.000 real_cost = 71.457 RBO-Proteus_TS2-scwrl costs 0.000 real_cost = 50.019 RBO-Proteus_TS2 costs 0.000 real_cost = 54.214 RBO-Proteus_TS1-scwrl costs 0.000 real_cost = 51.388 RBO-Proteus_TS1 costs 0.000 real_cost = 55.673 RAPTOR_TS4-scwrl costs 0.000 real_cost = -62.122 RAPTOR_TS4 costs 0.000 real_cost = -50.511 RAPTOR_TS3-scwrl costs 0.000 real_cost = -39.820 RAPTOR_TS3 costs 0.000 real_cost = -30.702 RAPTOR_TS2-scwrl costs 0.000 real_cost = -33.754 RAPTOR_TS2 costs 0.000 real_cost = -24.835 RAPTOR_TS1-scwrl costs 0.000 real_cost = -31.443 RAPTOR_TS1 costs 0.000 real_cost = -25.795 Pushchino_TS1-scwrl costs 0.000 real_cost = -66.153 Pushchino_TS1 costs 0.000 real_cost = -22.977 Poing_TS5-scwrl costs 0.000 real_cost = 10.224 Poing_TS5 costs 0.000 real_cost = 12.828 Poing_TS4-scwrl costs 0.000 real_cost = 34.232 Poing_TS4 costs 0.000 real_cost = 24.599 Poing_TS3-scwrl costs 0.000 real_cost = 67.959 Poing_TS3 costs 0.000 real_cost = 69.492 Poing_TS2-scwrl costs 0.000 real_cost = -51.522 Poing_TS2 costs 0.000 real_cost = -54.680 Poing_TS1-scwrl costs 0.000 real_cost = -42.803 Poing_TS1 costs 0.000 real_cost = -53.109 Phyre_de_novo_TS5-scwrl costs 0.000 real_cost = 34.232 Phyre_de_novo_TS5 costs 0.000 real_cost = 24.599 Phyre_de_novo_TS4-scwrl costs 0.000 real_cost = 67.959 Phyre_de_novo_TS4 costs 0.000 real_cost = 69.492 Phyre_de_novo_TS3-scwrl costs 0.000 real_cost = -36.401 Phyre_de_novo_TS3 costs 0.000 real_cost = -32.160 Phyre_de_novo_TS2-scwrl costs 0.000 real_cost = -43.338 Phyre_de_novo_TS2 costs 0.000 real_cost = -53.557 Phyre_de_novo_TS1-scwrl costs 0.000 real_cost = -158.029 Phyre_de_novo_TS1 costs 0.000 real_cost = -158.497 Phyre2_TS5-scwrl costs 0.000 real_cost = 21.742 Phyre2_TS5 costs 0.000 real_cost = 21.770 Phyre2_TS4-scwrl costs 0.000 real_cost = 34.232 Phyre2_TS4 costs 0.000 real_cost = 27.352 Phyre2_TS3-scwrl costs 0.000 real_cost = 67.959 Phyre2_TS3 costs 0.000 real_cost = 69.492 Phyre2_TS2-scwrl costs 0.000 real_cost = -51.336 Phyre2_TS2 costs 0.000 real_cost = -54.469 Phyre2_TS1-scwrl costs 0.000 real_cost = -43.252 Phyre2_TS1 costs 0.000 real_cost = -53.469 Phragment_TS5-scwrl costs 0.000 real_cost = 10.637 Phragment_TS5 costs 0.000 real_cost = 9.775 Phragment_TS4-scwrl costs 0.000 real_cost = 34.232 Phragment_TS4 costs 0.000 real_cost = 24.599 Phragment_TS3-scwrl costs 0.000 real_cost = 67.959 Phragment_TS3 costs 0.000 real_cost = 69.529 Phragment_TS2-scwrl costs 0.000 real_cost = -50.912 Phragment_TS2 costs 0.000 real_cost = -54.039 Phragment_TS1-scwrl costs 0.000 real_cost = -43.258 Phragment_TS1 costs 0.000 real_cost = -50.933 Pcons_multi_TS5-scwrl costs 0.000 real_cost = -47.948 Pcons_multi_TS5 costs 0.000 real_cost = -47.948 Pcons_multi_TS4-scwrl costs 0.000 real_cost = -55.607 Pcons_multi_TS4 costs 0.000 real_cost = -55.607 Pcons_multi_TS3-scwrl costs 0.000 real_cost = -64.698 Pcons_multi_TS3 costs 0.000 real_cost = -66.957 Pcons_multi_TS2-scwrl costs 0.000 real_cost = -114.339 Pcons_multi_TS2 costs 0.000 real_cost = -114.339 Pcons_multi_TS1-scwrl costs 0.000 real_cost = -100.964 Pcons_multi_TS1 costs 0.000 real_cost = -100.964 Pcons_local_TS5-scwrl costs 0.000 real_cost = -57.767 Pcons_local_TS5 costs 0.000 real_cost = -50.854 Pcons_local_TS4-scwrl costs 0.000 real_cost = -61.205 Pcons_local_TS4 costs 0.000 real_cost = -69.049 Pcons_local_TS3-scwrl costs 0.000 real_cost = -50.815 Pcons_local_TS3 costs 0.000 real_cost = -52.403 Pcons_local_TS2-scwrl costs 0.000 real_cost = -50.815 Pcons_local_TS2 costs 0.000 real_cost = -52.403 Pcons_local_TS1-scwrl costs 0.000 real_cost = -64.698 Pcons_local_TS1 costs 0.000 real_cost = -66.957 Pcons_dot_net_TS5-scwrl costs 0.000 real_cost = -104.855 Pcons_dot_net_TS5 costs 0.000 real_cost = -104.855 Pcons_dot_net_TS4-scwrl costs 0.000 real_cost = -58.648 Pcons_dot_net_TS4 costs 0.000 real_cost = -64.230 Pcons_dot_net_TS3-scwrl costs 0.000 real_cost = -54.790 Pcons_dot_net_TS3 costs 0.000 real_cost = -50.831 Pcons_dot_net_TS2-scwrl costs 0.000 real_cost = -50.815 Pcons_dot_net_TS2 costs 0.000 real_cost = -52.403 Pcons_dot_net_TS1-scwrl costs 0.000 real_cost = -64.698 Pcons_dot_net_TS1 costs 0.000 real_cost = -66.957 PSI_TS4-scwrl costs 0.000 real_cost = 22.457 PSI_TS4 costs 0.000 real_cost = 29.569 PSI_TS3-scwrl costs 0.000 real_cost = 20.928 PSI_TS3 costs 0.000 real_cost = 25.852 PSI_TS2-scwrl costs 0.000 real_cost = -63.027 PSI_TS2 costs 0.000 real_cost = -61.430 PSI_TS1-scwrl costs 0.000 real_cost = -71.685 PSI_TS1 costs 0.000 real_cost = -49.415 PS2-server_TS5-scwrl costs 0.000 real_cost = 37.966 PS2-server_TS5 costs 0.000 real_cost = 48.377 PS2-server_TS4-scwrl costs 0.000 real_cost = -23.317 PS2-server_TS4 costs 0.000 real_cost = -21.466 PS2-server_TS3-scwrl costs 0.000 real_cost = -83.091 PS2-server_TS3 costs 0.000 real_cost = -69.549 PS2-server_TS2-scwrl costs 0.000 real_cost = -62.916 PS2-server_TS2 costs 0.000 real_cost = -50.028 PS2-server_TS1-scwrl costs 0.000 real_cost = -48.915 PS2-server_TS1 costs 0.000 real_cost = -19.790 OLGAFS_TS5-scwrl costs 0.000 real_cost = 14.663 OLGAFS_TS5 costs 0.000 real_cost = 16.263 OLGAFS_TS4-scwrl costs 0.000 real_cost = 6.896 OLGAFS_TS4 costs 0.000 real_cost = 6.874 OLGAFS_TS3-scwrl costs 0.000 real_cost = 332.649 OLGAFS_TS3 costs 0.000 real_cost = 332.649 OLGAFS_TS2-scwrl costs 0.000 real_cost = 321.666 OLGAFS_TS2 costs 0.000 real_cost = 321.666 OLGAFS_TS1-scwrl costs 0.000 real_cost = 322.043 OLGAFS_TS1 costs 0.000 real_cost = 322.043 MUSTER_TS5-scwrl costs 0.000 real_cost = -92.303 MUSTER_TS5 costs 0.000 real_cost = -78.085 MUSTER_TS4-scwrl costs 0.000 real_cost = -31.852 MUSTER_TS4 costs 0.000 real_cost = -20.123 MUSTER_TS3-scwrl costs 0.000 real_cost = -44.504 MUSTER_TS3 costs 0.000 real_cost = -37.570 MUSTER_TS2-scwrl costs 0.000 real_cost = -46.838 MUSTER_TS2 costs 0.000 real_cost = -21.063 MUSTER_TS1-scwrl costs 0.000 real_cost = -60.007 MUSTER_TS1 costs 0.000 real_cost = -41.536 MUProt_TS5-scwrl costs 0.000 real_cost = -71.248 MUProt_TS5 costs 0.000 real_cost = -69.432 MUProt_TS4-scwrl costs 0.000 real_cost = -65.696 MUProt_TS4 costs 0.000 real_cost = -60.411 MUProt_TS3-scwrl costs 0.000 real_cost = -70.905 MUProt_TS3 costs 0.000 real_cost = -71.050 MUProt_TS2-scwrl costs 0.000 real_cost = -149.560 MUProt_TS2 costs 0.000 real_cost = -142.960 MUProt_TS1-scwrl costs 0.000 real_cost = -65.383 MUProt_TS1 costs 0.000 real_cost = -66.380 MULTICOM-REFINE_TS5-scwrl costs 0.000 real_cost = -76.391 MULTICOM-REFINE_TS5 costs 0.000 real_cost = -76.952 MULTICOM-REFINE_TS4-scwrl costs 0.000 real_cost = -53.370 MULTICOM-REFINE_TS4 costs 0.000 real_cost = -59.390 MULTICOM-REFINE_TS3-scwrl costs 0.000 real_cost = -149.891 MULTICOM-REFINE_TS3 costs 0.000 real_cost = -131.609 MULTICOM-REFINE_TS2-scwrl costs 0.000 real_cost = -64.083 MULTICOM-REFINE_TS2 costs 0.000 real_cost = -63.001 MULTICOM-REFINE_TS1-scwrl costs 0.000 real_cost = -68.825 MULTICOM-REFINE_TS1 costs 0.000 real_cost = -73.193 MULTICOM-RANK_TS5-scwrl costs 0.000 real_cost = -33.028 MULTICOM-RANK_TS5 costs 0.000 real_cost = -28.654 MULTICOM-RANK_TS4-scwrl costs 0.000 real_cost = -54.904 MULTICOM-RANK_TS4 costs 0.000 real_cost = -41.491 MULTICOM-RANK_TS3-scwrl costs 0.000 real_cost = -154.134 MULTICOM-RANK_TS3 costs 0.000 real_cost = -144.877 MULTICOM-RANK_TS2-scwrl costs 0.000 real_cost = -36.782 MULTICOM-RANK_TS2 costs 0.000 real_cost = -28.459 MULTICOM-RANK_TS1-scwrl costs 0.000 real_cost = -4.344 MULTICOM-RANK_TS1 costs 0.000 real_cost = -11.669 MULTICOM-CMFR_TS5-scwrl costs 0.000 real_cost = -149.560 MULTICOM-CMFR_TS5 costs 0.000 real_cost = -142.960 MULTICOM-CMFR_TS4-scwrl costs 0.000 real_cost = -114.797 MULTICOM-CMFR_TS4 costs 0.000 real_cost = -114.797 MULTICOM-CMFR_TS3-scwrl costs 0.000 real_cost = -49.709 MULTICOM-CMFR_TS3 costs 0.000 real_cost = -49.709 MULTICOM-CMFR_TS2-scwrl costs 0.000 real_cost = -28.475 MULTICOM-CMFR_TS2 costs 0.000 real_cost = -28.475 MULTICOM-CMFR_TS1-scwrl costs 0.000 real_cost = -3.717 MULTICOM-CMFR_TS1 costs 0.000 real_cost = -3.717 MULTICOM-CLUSTER_TS5-scwrl costs 0.000 real_cost = -126.292 MULTICOM-CLUSTER_TS5 costs 0.000 real_cost = -111.650 MULTICOM-CLUSTER_TS4-scwrl costs 0.000 real_cost = -31.371 MULTICOM-CLUSTER_TS4 costs 0.000 real_cost = -29.609 MULTICOM-CLUSTER_TS3-scwrl costs 0.000 real_cost = -43.864 MULTICOM-CLUSTER_TS3 costs 0.000 real_cost = -41.287 MULTICOM-CLUSTER_TS2-scwrl costs 0.000 real_cost = -45.735 MULTICOM-CLUSTER_TS2 costs 0.000 real_cost = -28.693 MULTICOM-CLUSTER_TS1-scwrl costs 0.000 real_cost = -63.252 MULTICOM-CLUSTER_TS1 costs 0.000 real_cost = -49.872 MUFOLD-Server_TS5-scwrl costs 0.000 real_cost = -31.881 MUFOLD-Server_TS5 costs 0.000 real_cost = -31.881 MUFOLD-Server_TS4-scwrl costs 0.000 real_cost = -33.820 MUFOLD-Server_TS4 costs 0.000 real_cost = -24.993 MUFOLD-Server_TS3-scwrl costs 0.000 real_cost = -30.691 MUFOLD-Server_TS3 costs 0.000 real_cost = -30.691 MUFOLD-Server_TS2-scwrl costs 0.000 real_cost = -36.960 MUFOLD-Server_TS2 costs 0.000 real_cost = -36.960 MUFOLD-Server_TS1-scwrl costs 0.000 real_cost = -46.975 MUFOLD-Server_TS1 costs 0.000 real_cost = -47.877 MUFOLD-MD_TS5-scwrl costs 0.000 real_cost = 92.889 MUFOLD-MD_TS5 costs 0.000 real_cost = 118.660 MUFOLD-MD_TS4-scwrl costs 0.000 real_cost = -8.531 MUFOLD-MD_TS4 costs 0.000 real_cost = 16.893 MUFOLD-MD_TS3-scwrl costs 0.000 real_cost = 178.505 MUFOLD-MD_TS3 costs 0.000 real_cost = 212.975 MUFOLD-MD_TS2-scwrl costs 0.000 real_cost = 182.028 MUFOLD-MD_TS2 costs 0.000 real_cost = 213.027 MUFOLD-MD_TS1-scwrl costs 0.000 real_cost = 7.318 MUFOLD-MD_TS1 costs 0.000 real_cost = 27.667 METATASSER_TS5-scwrl costs 0.000 real_cost = 219.572 METATASSER_TS5 costs 0.000 real_cost = 215.044 METATASSER_TS4-scwrl costs 0.000 real_cost = -139.179 METATASSER_TS4 costs 0.000 real_cost = -124.742 METATASSER_TS3-scwrl costs 0.000 real_cost = -71.616 METATASSER_TS3 costs 0.000 real_cost = -65.373 METATASSER_TS2-scwrl costs 0.000 real_cost = -29.090 METATASSER_TS2 costs 0.000 real_cost = -33.214 METATASSER_TS1-scwrl costs 0.000 real_cost = -86.390 METATASSER_TS1 costs 0.000 real_cost = -70.708 LOOPP_Server_TS5-scwrl costs 0.000 real_cost = -89.484 LOOPP_Server_TS5 costs 0.000 real_cost = -66.786 LOOPP_Server_TS4-scwrl costs 0.000 real_cost = -23.639 LOOPP_Server_TS4 costs 0.000 real_cost = -21.429 LOOPP_Server_TS3-scwrl costs 0.000 real_cost = -55.757 LOOPP_Server_TS3 costs 0.000 real_cost = -53.486 LOOPP_Server_TS2-scwrl costs 0.000 real_cost = 302.758 LOOPP_Server_TS2 costs 0.000 real_cost = 300.184 LOOPP_Server_TS1-scwrl costs 0.000 real_cost = -91.682 LOOPP_Server_TS1 costs 0.000 real_cost = -99.898 HHpred5_TS1-scwrl costs 0.000 real_cost = -38.512 HHpred5_TS1 costs 0.000 real_cost = -31.527 HHpred4_TS1-scwrl costs 0.000 real_cost = -35.718 HHpred4_TS1 costs 0.000 real_cost = -23.238 HHpred2_TS1-scwrl costs 0.000 real_cost = -35.718 HHpred2_TS1 costs 0.000 real_cost = -23.238 GeneSilicoMetaServer_TS5-scwrl costs 0.000 real_cost = -51.299 GeneSilicoMetaServer_TS5 costs 0.000 real_cost = -40.634 GeneSilicoMetaServer_TS4-scwrl costs 0.000 real_cost = -56.726 GeneSilicoMetaServer_TS4 costs 0.000 real_cost = -46.997 GeneSilicoMetaServer_TS3-scwrl costs 0.000 real_cost = -42.569 GeneSilicoMetaServer_TS3 costs 0.000 real_cost = -44.485 GeneSilicoMetaServer_TS2-scwrl costs 0.000 real_cost = -34.032 GeneSilicoMetaServer_TS2 costs 0.000 real_cost = -30.556 GeneSilicoMetaServer_TS1-scwrl costs 0.000 real_cost = -59.189 GeneSilicoMetaServer_TS1 costs 0.000 real_cost = -39.389 GS-MetaServer2_TS4-scwrl costs 0.000 real_cost = -34.032 GS-MetaServer2_TS4 costs 0.000 real_cost = -30.556 GS-MetaServer2_TS2-scwrl costs 0.000 real_cost = -34.462 GS-MetaServer2_TS2 costs 0.000 real_cost = -16.045 GS-MetaServer2_TS1-scwrl costs 0.000 real_cost = -59.189 GS-MetaServer2_TS1 costs 0.000 real_cost = -39.389 GS-KudlatyPred_TS2-scwrl costs 0.000 real_cost = -131.539 GS-KudlatyPred_TS2 costs 0.000 real_cost = -131.539 GS-KudlatyPred_TS1-scwrl costs 0.000 real_cost = -117.933 GS-KudlatyPred_TS1 costs 0.000 real_cost = -117.933 Frankenstein_TS5-scwrl costs 0.000 real_cost = -80.151 Frankenstein_TS5 costs 0.000 real_cost = -77.591 Frankenstein_TS4-scwrl costs 0.000 real_cost = -16.503 Frankenstein_TS4 costs 0.000 real_cost = -14.757 Frankenstein_TS3-scwrl costs 0.000 real_cost = -19.429 Frankenstein_TS3 costs 0.000 real_cost = -10.654 Frankenstein_TS2-scwrl costs 0.000 real_cost = -26.174 Frankenstein_TS2 costs 0.000 real_cost = -23.535 Frankenstein_TS1-scwrl costs 0.000 real_cost = -107.327 Frankenstein_TS1 costs 0.000 real_cost = -86.409 Fiser-M4T_TS1-scwrl costs 0.000 real_cost = 0.328 Fiser-M4T_TS1 costs 0.000 real_cost = 9.076 FUGUE_KM_AL4-scwrl costs 0.000 real_cost = 64.043 FUGUE_KM_AL4 costs 0.000 real_cost = 109.273 FUGUE_KM_AL3-scwrl costs 0.000 real_cost = -18.700 FUGUE_KM_AL3 costs 0.000 real_cost = 15.432 FUGUE_KM_AL2-scwrl costs 0.000 real_cost = -66.715 FUGUE_KM_AL2 costs 0.000 real_cost = -27.051 FUGUE_KM_AL1-scwrl costs 0.000 real_cost = -58.817 FUGUE_KM_AL1 costs 0.000 real_cost = -11.888 FOLDpro_TS5-scwrl costs 0.000 real_cost = -29.671 FOLDpro_TS5 costs 0.000 real_cost = -29.715 FOLDpro_TS4-scwrl costs 0.000 real_cost = 50.879 FOLDpro_TS4 costs 0.000 real_cost = 41.103 FOLDpro_TS3-scwrl costs 0.000 real_cost = -64.844 FOLDpro_TS3 costs 0.000 real_cost = -45.231 FOLDpro_TS2-scwrl costs 0.000 real_cost = -19.761 FOLDpro_TS2 costs 0.000 real_cost = -10.926 FOLDpro_TS1-scwrl costs 0.000 real_cost = 53.608 FOLDpro_TS1 costs 0.000 real_cost = 53.940 FFASsuboptimal_TS5-scwrl costs 0.000 real_cost = -72.149 FFASsuboptimal_TS5 costs 0.000 real_cost = -52.322 FFASsuboptimal_TS4-scwrl costs 0.000 real_cost = -62.881 FFASsuboptimal_TS4 costs 0.000 real_cost = -63.472 FFASsuboptimal_TS3-scwrl costs 0.000 real_cost = -58.144 FFASsuboptimal_TS3 costs 0.000 real_cost = -44.625 FFASsuboptimal_TS2-scwrl costs 0.000 real_cost = -55.868 FFASsuboptimal_TS2 costs 0.000 real_cost = -35.202 FFASsuboptimal_TS1-scwrl costs 0.000 real_cost = -39.176 FFASsuboptimal_TS1 costs 0.000 real_cost = -29.861 FFASstandard_TS4-scwrl costs 0.000 real_cost = -71.367 FFASstandard_TS4 costs 0.000 real_cost = -56.524 FFASstandard_TS3-scwrl costs 0.000 real_cost = -69.428 FFASstandard_TS3 costs 0.000 real_cost = -57.549 FFASstandard_TS2-scwrl costs 0.000 real_cost = -55.868 FFASstandard_TS2 costs 0.000 real_cost = -35.202 FFASstandard_TS1-scwrl costs 0.000 real_cost = -60.766 FFASstandard_TS1 costs 0.000 real_cost = -65.025 FFASflextemplate_TS5-scwrl costs 0.000 real_cost = -19.131 FFASflextemplate_TS5 costs 0.000 real_cost = -7.816 FFASflextemplate_TS4-scwrl costs 0.000 real_cost = -17.607 FFASflextemplate_TS4 costs 0.000 real_cost = -3.019 FFASflextemplate_TS3-scwrl costs 0.000 real_cost = -23.059 FFASflextemplate_TS3 costs 0.000 real_cost = -7.760 FFASflextemplate_TS2-scwrl costs 0.000 real_cost = -26.884 FFASflextemplate_TS2 costs 0.000 real_cost = -8.360 FFASflextemplate_TS1-scwrl costs 0.000 real_cost = -47.763 FFASflextemplate_TS1 costs 0.000 real_cost = -2.513 FEIG_TS5-scwrl costs 0.000 real_cost = 31.517 FEIG_TS5 costs 0.000 real_cost = 42.549 FEIG_TS4-scwrl costs 0.000 real_cost = -32.185 FEIG_TS4 costs 0.000 real_cost = -32.907 FEIG_TS3-scwrl costs 0.000 real_cost = -32.222 FEIG_TS3 costs 0.000 real_cost = -39.320 FEIG_TS2-scwrl costs 0.000 real_cost = -65.583 FEIG_TS2 costs 0.000 real_cost = -56.636 FEIG_TS1-scwrl costs 0.000 real_cost = -102.427 FEIG_TS1 costs 0.000 real_cost = -92.934 FAMSD_TS5-scwrl costs 0.000 real_cost = -24.097 FAMSD_TS5 costs 0.000 real_cost = -33.898 FAMSD_TS4-scwrl costs 0.000 real_cost = -57.372 FAMSD_TS4 costs 0.000 real_cost = -50.382 FAMSD_TS3-scwrl costs 0.000 real_cost = -65.222 FAMSD_TS3 costs 0.000 real_cost = -43.366 FAMSD_TS2-scwrl costs 0.000 real_cost = -70.492 FAMSD_TS2 costs 0.000 real_cost = -43.862 FAMSD_TS1-scwrl costs 0.000 real_cost = -34.970 FAMSD_TS1 costs 0.000 real_cost = -14.435 FALCON_TS5-scwrl costs 0.000 real_cost = 49.114 FALCON_TS5 costs 0.000 real_cost = 58.060 FALCON_TS4-scwrl costs 0.000 real_cost = -33.240 FALCON_TS4 costs 0.000 real_cost = -4.685 FALCON_TS3-scwrl costs 0.000 real_cost = -39.323 FALCON_TS3 costs 0.000 real_cost = -9.579 FALCON_TS2-scwrl costs 0.000 real_cost = -116.017 FALCON_TS2 costs 0.000 real_cost = -80.470 FALCON_TS1-scwrl costs 0.000 real_cost = -83.884 FALCON_TS1 costs 0.000 real_cost = -55.899 FALCON_CONSENSUS_TS5-scwrl costs 0.000 real_cost = -83.884 FALCON_CONSENSUS_TS5 costs 0.000 real_cost = -55.899 FALCON_CONSENSUS_TS4-scwrl costs 0.000 real_cost = -8.108 FALCON_CONSENSUS_TS4 costs 0.000 real_cost = 22.355 FALCON_CONSENSUS_TS3-scwrl costs 0.000 real_cost = 32.391 FALCON_CONSENSUS_TS3 costs 0.000 real_cost = 49.235 FALCON_CONSENSUS_TS2-scwrl costs 0.000 real_cost = 34.450 FALCON_CONSENSUS_TS2 costs 0.000 real_cost = 54.259 FALCON_CONSENSUS_TS1-scwrl costs 0.000 real_cost = -35.414 FALCON_CONSENSUS_TS1 costs 0.000 real_cost = -23.541 Distill_TS5-scwrl costs 0.000 real_cost = 109.654 Distill_TS5 costs 0.000 real_cost = 109.654 Distill_TS4-scwrl costs 0.000 real_cost = 110.306 Distill_TS4 costs 0.000 real_cost = 110.306 Distill_TS3-scwrl costs 0.000 real_cost = 76.077 Distill_TS3 costs 0.000 real_cost = 76.077 Distill_TS2-scwrl costs 0.000 real_cost = 98.227 Distill_TS2 costs 0.000 real_cost = 98.227 Distill_TS1-scwrl costs 0.000 real_cost = 143.252 Distill_TS1 costs 0.000 real_cost = 143.252 CpHModels_TS1-scwrl costs 0.000 real_cost = -6.621 CpHModels_TS1 costs 0.000 real_cost = 6.551 COMA_TS5-scwrl costs 0.000 real_cost = 14.268 COMA_TS5 costs 0.000 real_cost = 14.268 COMA_TS4-scwrl costs 0.000 real_cost = -75.205 COMA_TS4 costs 0.000 real_cost = -75.205 COMA_TS3-scwrl costs 0.000 real_cost = -75.205 COMA_TS3 costs 0.000 real_cost = -75.205 COMA_TS2-scwrl costs 0.000 real_cost = -75.205 COMA_TS2 costs 0.000 real_cost = -75.205 COMA_TS1-scwrl costs 0.000 real_cost = -39.300 COMA_TS1 costs 0.000 real_cost = -39.300 COMA-M_TS5-scwrl costs 0.000 real_cost = -50.665 COMA-M_TS5 costs 0.000 real_cost = -50.665 COMA-M_TS4-scwrl costs 0.000 real_cost = -50.665 COMA-M_TS4 costs 0.000 real_cost = -50.665 COMA-M_TS3-scwrl costs 0.000 real_cost = -64.140 COMA-M_TS3 costs 0.000 real_cost = -64.140 COMA-M_TS2-scwrl costs 0.000 real_cost = -64.140 COMA-M_TS2 costs 0.000 real_cost = -64.140 COMA-M_TS1-scwrl costs 0.000 real_cost = -64.140 COMA-M_TS1 costs 0.000 real_cost = -64.140 BioSerf_TS1-scwrl costs 0.000 real_cost = -26.557 BioSerf_TS1 costs 0.000 real_cost = -10.501 BAKER-ROBETTA_TS5-scwrl costs 0.000 real_cost = 88.778 BAKER-ROBETTA_TS5 costs 0.000 real_cost = 96.593 BAKER-ROBETTA_TS4-scwrl costs 0.000 real_cost = -84.465 BAKER-ROBETTA_TS4 costs 0.000 real_cost = -88.126 BAKER-ROBETTA_TS3-scwrl costs 0.000 real_cost = -35.743 BAKER-ROBETTA_TS3 costs 0.000 real_cost = -19.975 BAKER-ROBETTA_TS2-scwrl costs 0.000 real_cost = -23.816 BAKER-ROBETTA_TS2 costs 0.000 real_cost = -26.127 BAKER-ROBETTA_TS1-scwrl costs 0.000 real_cost = -75.535 BAKER-ROBETTA_TS1 costs 0.000 real_cost = -69.585 ACOMPMOD_TS5-scwrl costs 0.000 real_cost = 291.653 ACOMPMOD_TS5 costs 0.000 real_cost = 288.971 ACOMPMOD_TS4-scwrl costs 0.000 real_cost = -18.730 ACOMPMOD_TS4 costs 0.000 real_cost = -22.646 ACOMPMOD_TS3-scwrl costs 0.000 real_cost = 80.764 ACOMPMOD_TS3 costs 0.000 real_cost = 79.813 ACOMPMOD_TS2-scwrl costs 0.000 real_cost = -30.002 ACOMPMOD_TS2 costs 0.000 real_cost = -31.296 ACOMPMOD_TS1-scwrl costs 0.000 real_cost = -83.048 ACOMPMOD_TS1 costs 0.000 real_cost = -71.169 3Dpro_TS5-scwrl costs 0.000 real_cost = -29.671 3Dpro_TS5 costs 0.000 real_cost = -29.715 3Dpro_TS4-scwrl costs 0.000 real_cost = 50.879 3Dpro_TS4 costs 0.000 real_cost = 41.103 3Dpro_TS3-scwrl costs 0.000 real_cost = -64.844 3Dpro_TS3 costs 0.000 real_cost = -45.231 3Dpro_TS2-scwrl costs 0.000 real_cost = -19.761 3Dpro_TS2 costs 0.000 real_cost = -10.926 3Dpro_TS1-scwrl costs 0.000 real_cost = 53.608 3Dpro_TS1 costs 0.000 real_cost = 53.940 3DShot2_TS1-scwrl costs 0.000 real_cost = 10.164 3DShot2_TS1 costs 0.000 real_cost = 24.264 3D-JIGSAW_V3_TS5-scwrl costs 0.000 real_cost = -7.437 3D-JIGSAW_V3_TS5 costs 0.000 real_cost = -7.437 3D-JIGSAW_V3_TS4-scwrl costs 0.000 real_cost = -6.488 3D-JIGSAW_V3_TS4 costs 0.000 real_cost = -6.488 3D-JIGSAW_V3_TS3-scwrl costs 0.000 real_cost = -5.868 3D-JIGSAW_V3_TS3 costs 0.000 real_cost = -5.868 3D-JIGSAW_V3_TS2-scwrl costs 0.000 real_cost = 1.617 3D-JIGSAW_V3_TS2 costs 0.000 real_cost = 1.617 3D-JIGSAW_V3_TS1-scwrl costs 0.000 real_cost = 5.292 3D-JIGSAW_V3_TS1 costs 0.000 real_cost = 5.292 3D-JIGSAW_AEP_TS5-scwrl costs 0.000 real_cost = -22.432 3D-JIGSAW_AEP_TS5 costs 0.000 real_cost = -22.432 3D-JIGSAW_AEP_TS4-scwrl costs 0.000 real_cost = -26.389 3D-JIGSAW_AEP_TS4 costs 0.000 real_cost = -26.389 3D-JIGSAW_AEP_TS3-scwrl costs 0.000 real_cost = -14.992 3D-JIGSAW_AEP_TS3 costs 0.000 real_cost = -14.992 3D-JIGSAW_AEP_TS2-scwrl costs 0.000 real_cost = -19.097 3D-JIGSAW_AEP_TS2 costs 0.000 real_cost = -19.097 3D-JIGSAW_AEP_TS1-scwrl costs 0.000 real_cost = -18.877 3D-JIGSAW_AEP_TS1 costs 0.000 real_cost = -18.877 T0492.try5-opt3.repack-nonPC.pdb.gz costs 0.000 real_cost = -131.246 T0492.try5-opt3.pdb.gz costs 0.000 real_cost = -127.909 T0492.try5-opt3.gromacs0.repack-nonPC.pdb.gz costs 0.000 real_cost = -127.613 T0492.try5-opt3.gromacs0.pdb.gz costs 0.000 real_cost = -123.093 T0492.try5-opt2.pdb.gz costs 0.000 real_cost = -127.654 T0492.try5-opt1.pdb.gz costs 0.000 real_cost = -127.219 T0492.try5-opt1-scwrl.pdb.gz costs 0.000 real_cost = -136.151 T0492.try4-opt3.repack-nonPC.pdb.gz costs 0.000 real_cost = -116.838 T0492.try4-opt3.pdb.gz costs 0.000 real_cost = -117.677 T0492.try4-opt3.gromacs0.repack-nonPC.pdb.gz costs 0.000 real_cost = -119.338 T0492.try4-opt3.gromacs0.pdb.gz costs 0.000 real_cost = -117.904 T0492.try4-opt2.pdb.gz costs 0.000 real_cost = -118.590 T0492.try4-opt1.pdb.gz costs 0.000 real_cost = -118.361 T0492.try4-opt1-scwrl.pdb.gz costs 0.000 real_cost = -121.979 T0492.try3-opt3.repack-nonPC.pdb.gz costs 0.000 real_cost = -119.776 T0492.try3-opt3.pdb.gz costs 0.000 real_cost = -119.434 T0492.try3-opt3.gromacs0.repack-nonPC.pdb.gz costs 0.000 real_cost = -117.746 T0492.try3-opt3.gromacs0.pdb.gz costs 0.000 real_cost = -117.759 T0492.try3-opt2.pdb.gz costs 0.000 real_cost = -115.232 T0492.try3-opt1.pdb.gz costs 0.000 real_cost = -116.992 T0492.try3-opt1-scwrl.pdb.gz costs 0.000 real_cost = -120.139 T0492.try2-opt3.repack-nonPC.pdb.gz costs 0.000 real_cost = -113.929 T0492.try2-opt3.pdb.gz costs 0.000 real_cost = -116.880 T0492.try2-opt3.gromacs0.repack-nonPC.pdb.gz costs 0.000 real_cost = -115.964 T0492.try2-opt3.gromacs0.pdb.gz costs 0.000 real_cost = -122.952 T0492.try2-opt2.pdb.gz costs 0.000 real_cost = -117.733 T0492.try2-opt1.pdb.gz costs 0.000 real_cost = -114.849 T0492.try2-opt1-scwrl.pdb.gz costs 0.000 real_cost = -110.430 T0492.try1-opt3.repack-nonPC.pdb.gz costs 0.000 real_cost = -117.921 T0492.try1-opt3.pdb.gz costs 0.000 real_cost = -116.979 T0492.try1-opt3.gromacs0.repack-nonPC.pdb.gz costs 0.000 real_cost = -106.627 T0492.try1-opt3.gromacs0.pdb.gz costs 0.000 real_cost = -106.181 T0492.try1-opt2.pdb.gz costs 0.000 real_cost = -112.582 T0492.try1-opt1.pdb.gz costs 0.000 real_cost = -104.356 T0492.try1-opt1-scwrl.pdb.gz costs 0.000 real_cost = -108.678 T0492.try1-init.pdb.gz costs 0.000 real_cost = -94.662 T0492.MQAX4-opt3.repack-nonPC.pdb.gz costs 0.000 real_cost = -97.901 T0492.MQAX4-opt3.pdb.gz costs 0.000 real_cost = -106.433 T0492.MQAX4-opt3.gromacs0.repack-nonPC.pdb.gz costs 0.000 real_cost = -94.570 T0492.MQAX4-opt3.gromacs0.pdb.gz costs 0.000 real_cost = -98.195 T0492.MQAX4-opt2.pdb.gz costs 0.000 real_cost = -103.395 T0492.MQAX4-opt1.pdb.gz costs 0.000 real_cost = -99.579 T0492.MQAX4-opt1-scwrl.pdb.gz costs 0.000 real_cost = -93.425 T0492.MQAX1-opt3.repack-nonPC.pdb.gz costs 0.000 real_cost = -91.520 T0492.MQAX1-opt3.pdb.gz costs 0.000 real_cost = -87.643 T0492.MQAX1-opt3.gromacs0.repack-nonPC.pdb.gz costs 0.000 real_cost = -86.662 T0492.MQAX1-opt3.gromacs0.pdb.gz costs 0.000 real_cost = -83.137 T0492.MQAX1-opt2.pdb.gz costs 0.000 real_cost = -86.927 T0492.MQAX1-opt1.pdb.gz costs 0.000 real_cost = -86.415 T0492.MQAX1-opt1-scwrl.pdb.gz costs 0.000 real_cost = -97.035 T0492.MQAU4-opt3.repack-nonPC.pdb.gz costs 0.000 real_cost = -136.905 T0492.MQAU4-opt3.pdb.gz costs 0.000 real_cost = -132.280 T0492.MQAU4-opt3.gromacs0.repack-nonPC.pdb.gz costs 0.000 real_cost = -138.006 T0492.MQAU4-opt3.gromacs0.pdb.gz costs 0.000 real_cost = -129.732 T0492.MQAU4-opt2.pdb.gz costs 0.000 real_cost = -145.381 T0492.MQAU4-opt1.pdb.gz costs 0.000 real_cost = -144.165 T0492.MQAU4-opt1-scwrl.pdb.gz costs 0.000 real_cost = -142.315 T0492.MQAU1-opt3.repack-nonPC.pdb.gz costs 0.000 real_cost = -117.452 T0492.MQAU1-opt3.pdb.gz costs 0.000 real_cost = -117.874 T0492.MQAU1-opt3.gromacs0.repack-nonPC.pdb.gz costs 0.000 real_cost = -123.108 T0492.MQAU1-opt3.gromacs0.pdb.gz costs 0.000 real_cost = -120.603 T0492.MQAU1-opt2.pdb.gz costs 0.000 real_cost = -122.140 T0492.MQAU1-opt1.pdb.gz costs 0.000 real_cost = -121.958 T0492.MQAU1-opt1-scwrl.pdb.gz costs 0.000 real_cost = -118.030 T0492.MQAC4-opt3.repack-nonPC.pdb.gz costs 0.000 real_cost = -137.065 T0492.MQAC4-opt3.pdb.gz costs 0.000 real_cost = -136.147 T0492.MQAC4-opt3.gromacs0.repack-nonPC.pdb.gz costs 0.000 real_cost = -128.633 T0492.MQAC4-opt3.gromacs0.pdb.gz costs 0.000 real_cost = -126.167 T0492.MQAC4-opt2.pdb.gz costs 0.000 real_cost = -138.861 T0492.MQAC4-opt1.pdb.gz costs 0.000 real_cost = -139.876 T0492.MQAC4-opt1-scwrl.pdb.gz costs 0.000 real_cost = -138.958 T0492.MQAC1-opt3.repack-nonPC.pdb.gz costs 0.000 real_cost = -153.931 T0492.MQAC1-opt3.pdb.gz costs 0.000 real_cost = -134.551 T0492.MQAC1-opt3.gromacs0.repack-nonPC.pdb.gz costs 0.000 real_cost = -146.243 T0492.MQAC1-opt3.gromacs0.pdb.gz costs 0.000 real_cost = -130.217 T0492.MQAC1-opt2.pdb.gz costs 0.000 real_cost = -138.934 T0492.MQAC1-opt1.pdb.gz costs 0.000 real_cost = -132.014 T0492.MQAC1-opt1-scwrl.pdb.gz costs 0.000 real_cost = -149.042 ../model5.ts-submitted costs 0.000 real_cost = -82.750 ../model4.ts-submitted costs 0.000 real_cost = -129.933 ../model3.ts-submitted costs 0.000 real_cost = -94.472 ../model2.ts-submitted costs 0.000 real_cost = -117.038 ../model1.ts-submitted costs 0.000 real_cost = -127.921 align5 costs 0.000 real_cost = 20.187 align4 costs 0.000 real_cost = 88.071 align3 costs 0.000 real_cost = -84.032 align2 costs 0.000 real_cost = -64.607 align1 costs 0.000 real_cost = -99.116 T0492.try1-opt2.pdb costs 0.000 real_cost = -112.582 model5-scwrl costs 0.000 real_cost = -84.214 model5.ts-submitted costs 0.000 real_cost = -82.750 model4-scwrl costs 0.000 real_cost = -152.194 model4.ts-submitted costs 0.000 real_cost = -129.933 model3-scwrl costs 0.000 real_cost = -95.334 model3.ts-submitted costs 0.000 real_cost = -94.472 model2-scwrl costs 0.000 real_cost = -116.823 model2.ts-submitted costs 0.000 real_cost = -117.038 model1-scwrl costs 0.000 real_cost = -137.322 model1.ts-submitted costs 0.000 real_cost = -127.921 2k5lA costs 0.000 real_cost = -895.000 # command:CPU_time= 106.066 sec, elapsed time= 247.024 sec. # command:rm -f sort.tmp /projects/compbio/bin/sorttbl real_cost < decoys/evaluate.rdb > sort.tmp mv -f sort.tmp decoys/evaluate.rdb