# List of top-scoring protein chains for t2k-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2h3jA 75 1.71e-07 2gcxA 75 2.12e-06 1fx7A 230 4.52e-03 1bi0 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1bymA 97 6.06e-02 1bi0 b.34.1.2 24458 2dtr 226 1.41e-01 1bi0 1bi0 226 4.31e-01 1bi0 2qq9A 226 5.68e-01 1s68A 249 1.58e+00 d.142.2.4 98591 2o95A 187 2.15e+00 2hvqA 335 2.28e+00 2i7rA 118 3.07e+00 d.32.1.2 137102 3bn1A 373 3.22e+00 1p9bA 442 3.66e+00 c.37.1.10 94385 1dxeA 256 3.93e+00 1dxeA c.1.12.5 29310 1e0cA 271 4.43e+00 1e0cA c.46.1.2,c.46.1.2 32717,32718 2pkhA 148 5.17e+00 1qw1A 121 5.36e+00 1opd 85 7.05e+00 1ptf 1opdA 85 7.05e+00 d.94.1.1 40560 1ywkA 289 7.27e+00 b.82.1.13 124155 1cbfA 285 7.41e+00 c.90.1.1 35587 2p19A 149 8.38e+00 2fomB 185 9.52e+00 b.47.1.3 133884 1qo7A 394 1.06e+01 1qo7A c.69.1.11 34697 1aboA 62 1.06e+01 1bbzA b.34.2.1 24474 1bbzA 58 1.07e+01 1bbzA b.34.2.1 24477 1j6oA 268 1.09e+01 c.1.9.12 77088 1y8xB 98 1.10e+01 2fa1A 160 1.18e+01 d.190.1.2 133182 1mdoA 393 1.27e+01 c.67.1.4 79013 2o88A 58 1.33e+01 1b9hA 388 1.38e+01 1b9hA c.67.1.4 34488 2c81A 418 1.41e+01 2pqcA 445 1.59e+01 2z83A 459 1.59e+01 2gg6A 455 1.65e+01 1zx6A 58 1.79e+01 2iacA 142 1.80e+01 3bedA 142 1.80e+01 1lrzA 426 1.84e+01 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 2g5cA 281 1.90e+01 a.100.1.12,c.2.1.6 134646,134647 1f6yA 262 1.96e+01 1f6yA c.1.21.2 29673 2nygA 273 1.96e+01 3bhdA 234 2.02e+01 3c0cA 73 2.07e+01 2qmmA 197 2.14e+01 1dklA 410 2.18e+01 1dklA c.60.1.2 33996 2e4sA 189 2.20e+01 1gt91 357 2.27e+01 1k1eA 180 2.28e+01 c.108.1.5 67995 1sphA 88 2.31e+01 1ptf d.94.1.1 40544 1xruA 282 2.32e+01 b.82.1.13 122262 1t1iA 364 2.40e+01 c.41.1.2 106248 1pjqA 457 2.40e+01 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 2if1A 126 2.41e+01 d.64.1.1 39547 1zvkA 358 2.49e+01 1jdqA 98 2.65e+01 d.68.3.3 66559 1va0A 239 2.66e+01 c.90.1.1 119899 2k3aA 155 2.69e+01 1q2kA 31 2.70e+01 g.3.7.2 95630 2p2uA 171 2.74e+01 1ji8A 111 2.77e+01 d.203.1.1 66733 1r1gA 31 2.86e+01 g.3.7.2 96816 1zoiA 276 3.07e+01 1qp8A 303 3.10e+01 1qp8A c.2.1.4,c.23.12.1 30092,31352 1z2mA 155 3.15e+01 d.15.1.1,d.15.1.1 124387,124388 1t1gA 364 3.17e+01 c.41.1.2 106246 2yxbA 161 3.17e+01 1o6aA 96 3.22e+01 b.139.1.1 92562 1wmxA 205 3.22e+01 b.18.1.24 109418 1ysjA 404 3.23e+01 c.56.5.4,d.58.19.1 123975,123976 2r8cA 426 3.24e+01 1lq9A 112 3.31e+01 d.58.4.3 78129 2gd9A 189 3.59e+01 3bu3A 306 3.68e+01 1wp5A 323 3.73e+01 b.68.10.1 114780 1ihp 438 3.78e+01 1ihp 1kafA 108 3.80e+01 d.199.1.1 68372 1ylnA 252 3.88e+01 b.45.2.1,b.45.2.2 123657,123658 2nwvA 114 3.91e+01 d.326.1.1 138720 1dkqA 410 4.01e+01 1dklA c.60.1.2 33998 2ogyA 262 4.02e+01 2e7fA 262 4.06e+01 2eg4A 230 4.06e+01 1dkmA 410 4.14e+01 1dklA c.60.1.2 34000 2rdeA 251 4.16e+01 1ltoA 245 4.39e+01 b.47.1.2 84707 2a1iA 146 4.43e+01 c.52.1.20 125999 2jrnA 163 4.43e+01 2iz3A 97 4.47e+01 1tcrA 202 4.50e+01 1tcrA b.1.1.1,b.1.1.2 20605,21549 2je3A 186 4.58e+01 2jaeA 489 4.61e+01 1l3iA 192 4.66e+01 c.66.1.22 77676 1ir3A 306 4.73e+01 1fmk d.144.1.7 41702 1iq0A 592 4.90e+01 a.27.1.1,c.26.1.1,d.67.2.1 66257,66258,66259 2p4gA 270 4.91e+01 1bpv 112 4.94e+01 1bpv 2qtxA 71 5.00e+01 1adeA 431 5.02e+01 1adeA c.37.1.10 32213 1f3uB 171 5.08e+01 1f3uB b.65.1.1 27525 1qwoA 442 5.12e+01 c.60.1.2 104620 2z10A 194 5.15e+01 1n7eA 97 5.20e+01 b.36.1.1 91691 2j4hA 193 5.22e+01 2qmcB 188 5.24e+01 2f9nA 245 5.27e+01 2mcm 112 5.30e+01 2mcm 2mcmA 112 5.30e+01 b.1.7.1 22207 1noaA 113 5.33e+01 b.1.7.1 22208 1x1mA 107 5.35e+01 d.15.1.1 121592 1a0lA 244 5.46e+01 5ptp b.47.1.2 26286 1aorA 605 5.49e+01 1b25A a.110.1.1,d.152.1.1 19042,41794 1u9kA 114 5.49e+01 b.1.1.1 113244 1jhfA 202 5.53e+01 a.4.5.2,b.87.1.1 63057,63058 2gatA 66 5.54e+01 1gatA g.39.1.1 45102 1ygyA 529 5.56e+01 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 3bk2A 562 5.58e+01 1y51A 88 5.59e+01 2b71A 196 5.63e+01 b.62.1.1 128004 1eikA 77 5.63e+01 1eikA d.78.1.1 39751 1f7wA 144 5.77e+01 1f46A d.129.4.1 59679 2cw5A 255 5.79e+01 1kcvL 214 5.85e+01 b.1.1.1,b.1.1.2 72317,72318 2hrzA 342 5.88e+01 1vl6A 388 5.97e+01 c.2.1.7,c.58.1.3 108724,108725 2i7hA 189 6.02e+01 2cwlA 302 6.02e+01 a.25.1.3 130927 1mc3A 296 6.07e+01 c.68.1.6 78943 2d1hA 109 6.11e+01 a.4.5.50 131125 2ggrA 76 6.19e+01 1gatA 60 6.21e+01 1gatA g.39.1.1 45106 1yemA 179 6.26e+01 d.63.1.2 116646 2cp8A 54 6.27e+01 a.5.2.1 130695 3sicI 107 6.33e+01 3ssi d.84.1.1 40028 2v0hA 456 6.33e+01 2p9jA 162 6.36e+01 2drmA 58 6.39e+01 2j6fA 62 6.39e+01 2nqoB 188 6.42e+01 1wfxA 186 6.48e+01 d.166.1.5 114596 1jjhA 86 6.50e+01 2bopA d.58.8.1 63119 2ijrA 300 6.59e+01 1qmgA 524 6.60e+01 1qmgA a.100.1.2,c.2.1.6 18785,30182 1j7jA 178 6.65e+01 c.61.1.1 84131 2a28A 54 6.65e+01 1md6A 154 6.66e+01 b.42.1.2 91242 1zzmA 259 6.80e+01 c.1.9.12 125911 1yloA 348 6.81e+01 b.49.3.1,c.56.5.4 123659,123660 1b47A 304 6.92e+01 2cblA a.39.1.7,a.48.1.1,d.93.1.1 17381,17775,40529 1vqoE 178 6.95e+01 d.141.1.1,d.141.1.1 120366,120367 1cz4A 185 6.96e+01 1cz4A b.52.2.3,d.31.1.1 26934,38468 2iabA 155 7.07e+01 1xffA 240 7.10e+01 d.153.1.1 109580 2a7lA 136 7.17e+01 d.20.1.1 126350 2bwbA 46 7.22e+01 a.5.2.1 129329 1vg5A 73 7.32e+01 a.5.2.1 113640 3bhnA 236 7.44e+01 2nwiA 172 7.45e+01 2jbhA 225 7.46e+01 1wr7A 41 7.52e+01 1iugA 352 7.52e+01 c.67.1.3 90699 2df8A 325 7.53e+01 2jg2A 422 7.54e+01 2e5fA 325 7.56e+01 1uarA 285 7.59e+01 c.46.1.2,c.46.1.2 107762,107763 1pbyA 489 7.62e+01 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 94417,94418,94419,94420,94421 1e69B 322 7.64e+01 1e69B c.37.1.12 32377 2h0aA 276 7.67e+01 2hi1A 330 7.74e+01 2p3pA 207 7.86e+01 2elcA 329 7.90e+01 1fjgJ 105 7.92e+01 1fjfJ d.58.15.1 39330