# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2h3jA 75 4.67e-07 2gcxA 75 1.47e-06 1bi0 226 7.77e-01 1bi0 1bymA 97 1.05e+00 1bi0 b.34.1.2 24458 1fx7A 230 1.15e+00 1bi0 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1qw1A 121 1.60e+00 2qq9A 226 2.31e+00 2dchX 216 2.72e+00 2dtr 226 3.53e+00 1bi0 2dtrA 226 3.53e+00 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1opd 85 5.31e+00 1ptf 1opdA 85 5.31e+00 d.94.1.1 40560 1y8xB 98 5.46e+00 1egiA 147 5.53e+00 1eggA d.169.1.1 42331 2rcfA 91 5.80e+00 1t0yA 122 5.86e+00 d.15.1.1 99066 1sphA 88 6.18e+00 1ptf d.94.1.1 40544 1e0cA 271 7.84e+00 1e0cA c.46.1.2,c.46.1.2 32717,32718 1eggA 147 8.39e+00 1eggA d.169.1.1 42333 2bpsA 81 8.47e+00 1y8qB 640 8.78e+00 1pea 385 9.23e+00 1pea 1peaA 385 9.23e+00 c.93.1.1 35662 1y8xA 160 1.19e+01 d.20.1.1 122769 1guiA 155 1.28e+01 b.18.1.14 76351 3bhyA 283 1.34e+01 1dpeA 507 1.37e+01 c.94.1.1 35799 1wiwA 290 1.40e+01 c.80.1.1 114681 1s68A 249 1.45e+01 d.142.2.4 98591 2ggrA 76 1.45e+01 2bjnA 160 1.47e+01 2qsfX 171 1.59e+01 2qu8A 228 1.64e+01 1iz6A 138 1.65e+01 b.34.5.2,b.40.4.5 76976,76977 2cxxA 190 1.88e+01 c.37.1.8 131013 2hjhA 354 2.04e+01 1s9jA 341 2.09e+01 d.144.1.7 112049 1sz7A 200 2.36e+01 1bkb 136 2.44e+01 1bkb 1bkbA 136 2.44e+01 b.34.5.2,b.40.4.5 24609,25341 2cwlA 302 2.53e+01 a.25.1.3 130927 1oebA 62 2.54e+01 b.34.2.1 86909 1y51A 88 2.62e+01 2qalM 117 2.67e+01 1utiA 58 2.69e+01 b.34.2.1 99962 2vdwA 302 2.71e+01 2hazA 105 2.71e+01 b.1.2.1 136303 1befA 181 2.85e+01 1befA b.47.1.3 26419 1lzlA 323 3.06e+01 c.69.1.2 78306 1g8sA 230 3.08e+01 c.66.1.3 90507 2hvqA 335 3.12e+01 2nsnA 95 3.31e+01 2nz7A 98 3.32e+01 2i7rA 118 3.42e+01 d.32.1.2 137102 1noaA 113 3.46e+01 b.1.7.1 22208 2fyqA 194 3.50e+01 1zh2A 121 3.56e+01 c.23.1.1 125069 1fbnA 230 3.73e+01 1fbnA c.66.1.3 34181 1h80A 464 4.01e+01 b.80.1.8 65714 1jeoA 180 4.10e+01 c.80.1.3 66611 1zelA 298 4.14e+01 1x1mA 107 4.21e+01 d.15.1.1 121592 1b7yB 785 4.24e+01 1pysB a.6.1.1,a.6.1.1,b.40.4.4,d.58.13.1,d.104.1.1,b.153.1.1 16301,16302,25312,39311,40780,41456 1pysB 785 4.28e+01 1pysB a.6.1.1,a.6.1.1,b.40.4.4,d.58.13.1,d.104.1.1,b.153.1.1 16299,16300,25311,39310,40779,41455 2a0iA 330 4.29e+01 1qvbA 481 4.44e+01 1qvbA c.1.8.4 28983 1hl9A 449 4.47e+01 b.71.1.3,c.1.8.11 90650,90651 2d1hA 109 4.48e+01 a.4.5.50 131125 1f3uB 171 4.68e+01 1f3uB b.65.1.1 27525 2o8bA 934 4.68e+01 2v89A 82 4.69e+01 2p19A 149 4.72e+01 1gwmA 153 4.73e+01 b.18.1.19 83348 2q30A 110 4.98e+01 2eifA 136 4.99e+01 1bkb b.34.5.2,b.40.4.5 24607,25339 2hpsA 186 5.02e+01 1dklA 410 5.05e+01 1dklA c.60.1.2 33996 2de0X 526 5.06e+01 1rpnA 335 5.09e+01 c.2.1.2 97708 2z1mA 345 5.11e+01 2fbhA 146 5.16e+01 a.4.5.28 133245 1ew4A 106 5.17e+01 1ew4A d.82.2.1 40023 2f1fA 164 5.20e+01 d.58.18.6,d.58.18.6 132760,132761 1vg5A 73 5.23e+01 a.5.2.1 113640 2e74D 179 5.26e+01 b.33.1.1,f.23.12.1 132049,132050 1shcA 195 5.27e+01 1shcA b.55.1.2 26992 1whzA 70 5.28e+01 d.50.3.2 114656 1genA 218 5.49e+01 b.66.1.1 27536 1griA 217 5.53e+01 1griA b.34.2.1,b.34.2.1,d.93.1.1 24531,24532,40473 1oflA 481 5.54e+01 b.80.1.4 103934 1yhvA 297 5.68e+01 1kzfA 230 5.75e+01 d.108.1.3 73354 1lrzA 426 5.81e+01 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 2ckwA 515 5.88e+01 1vfyA 73 5.99e+01 1vfyA g.50.1.1 45357 2jdqD 83 6.02e+01 2p91A 285 6.27e+01 1ujnA 348 6.38e+01 e.22.1.1 99460 1v2yA 105 6.41e+01 d.15.1.1 100275 2bzyA 67 6.42e+01 1vqoK 132 6.55e+01 b.39.1.1 120372 1n3hA 207 6.91e+01 b.55.1.2 91564 1x6mA 196 7.00e+01 b.88.1.4 114920 1p4dA 330 7.09e+01 d.89.1.5 94101 1uheA 97 7.11e+01 2q7tA 301 7.17e+01 1fjgJ 105 7.31e+01 1fjfJ d.58.15.1 39330 1zx6A 58 7.49e+01 2il5A 171 7.55e+01 1qbjA 81 7.58e+01 1qbjA a.4.5.19 16155 1dbgA 506 7.62e+01 1dbgA b.80.1.4 28033 1zlmA 58 7.63e+01 1y0mA 61 7.67e+01 1h9sA 140 7.68e+01 1b9mA b.40.6.2,b.40.6.2 60843,60844 1xahA 354 7.70e+01 2o9sA 67 7.87e+01 1fdr 248 7.96e+01 1fdr 1fdrA 248 7.96e+01 b.43.4.2,c.25.1.1 25653,31543 1dkqA 410 8.00e+01 1dklA c.60.1.2 33998