# TARGET T0492 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0492.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 61.0306 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 M 0.148 0.013 0.018 0.016 0.169 0.636 2 F 0.257 0.047 0.007 0.009 0.108 0.572 3 S 0.263 0.053 0.018 0.008 0.144 0.515 4 L 0.014 0.003 0.792 0.038 0.108 0.045 5 R 0.022 0.002 0.773 0.038 0.125 0.040 6 D 0.022 0.002 0.761 0.036 0.150 0.028 7 A 0.055 0.056 0.077 0.045 0.324 0.442 8 K 0.046 0.030 0.026 0.014 0.819 0.065 9 C 0.023 0.005 0.025 0.007 0.898 0.042 10 G 0.024 0.003 0.013 0.001 0.883 0.077 11 Q 0.566 0.035 0.003 0.001 0.319 0.077 12 T 0.894 0.004 0.001 0.001 0.014 0.088 13 V 0.991 0.001 0.001 0.001 0.002 0.006 14 K 0.997 0.001 0.001 0.001 0.001 0.002 15 V 0.998 0.001 0.001 0.001 0.001 0.002 16 V 0.988 0.001 0.001 0.001 0.002 0.010 17 K 0.950 0.001 0.001 0.001 0.011 0.038 18 L 0.758 0.007 0.001 0.002 0.050 0.183 19 H 0.229 0.018 0.003 0.006 0.289 0.455 20 G 0.042 0.010 0.005 0.010 0.378 0.554 21 T 0.018 0.006 0.016 0.056 0.377 0.527 22 G 0.012 0.006 0.037 0.411 0.302 0.232 23 A 0.002 0.001 0.018 0.904 0.042 0.032 24 L 0.002 0.001 0.007 0.971 0.009 0.010 25 K 0.001 0.001 0.002 0.989 0.003 0.004 26 R 0.001 0.001 0.002 0.990 0.003 0.003 27 R 0.001 0.001 0.002 0.994 0.002 0.001 28 I 0.001 0.001 0.004 0.989 0.005 0.001 29 M 0.001 0.001 0.009 0.982 0.006 0.002 30 D 0.001 0.001 0.011 0.975 0.009 0.004 31 M 0.001 0.001 0.016 0.889 0.033 0.060 32 G 0.003 0.001 0.006 0.015 0.081 0.894 33 I 0.028 0.048 0.008 0.003 0.126 0.788 34 T 0.062 0.024 0.015 0.002 0.844 0.052 35 R 0.035 0.004 0.007 0.002 0.910 0.041 36 G 0.019 0.001 0.004 0.001 0.896 0.079 37 C 0.680 0.015 0.001 0.001 0.257 0.046 38 E 0.937 0.003 0.001 0.001 0.009 0.051 39 I 0.989 0.001 0.001 0.001 0.002 0.008 40 Y 0.993 0.001 0.001 0.001 0.001 0.005 41 I 0.993 0.001 0.001 0.001 0.001 0.005 42 R 0.981 0.001 0.001 0.001 0.005 0.013 43 K 0.934 0.002 0.001 0.001 0.015 0.048 44 V 0.740 0.006 0.002 0.002 0.065 0.185 45 A 0.347 0.016 0.008 0.002 0.182 0.444 46 P 0.140 0.015 0.016 0.002 0.625 0.202 47 L 0.033 0.007 0.033 0.005 0.743 0.178 48 G 0.024 0.006 0.014 0.001 0.679 0.276 49 D 0.082 0.011 0.004 0.001 0.561 0.342 50 P 0.137 0.005 0.005 0.002 0.189 0.663 51 I 0.643 0.015 0.005 0.002 0.101 0.234 52 Q 0.946 0.002 0.001 0.001 0.018 0.031 53 I 0.988 0.001 0.001 0.001 0.002 0.009 54 N 0.985 0.002 0.001 0.001 0.006 0.007 55 V 0.863 0.003 0.001 0.001 0.121 0.011 56 R 0.277 0.001 0.001 0.001 0.691 0.029 57 G 0.107 0.002 0.003 0.002 0.859 0.026 58 Y 0.677 0.011 0.002 0.003 0.267 0.040 59 E 0.911 0.004 0.001 0.003 0.025 0.055 60 L 0.961 0.003 0.002 0.003 0.012 0.019 61 S 0.956 0.002 0.003 0.003 0.011 0.025 62 L 0.869 0.005 0.005 0.005 0.029 0.087 63 R 0.556 0.004 0.012 0.009 0.115 0.305 64 K 0.089 0.004 0.273 0.104 0.322 0.209 65 S 0.043 0.003 0.367 0.096 0.392 0.100 66 A 0.010 0.002 0.737 0.082 0.151 0.020 67 A 0.054 0.004 0.413 0.125 0.317 0.087 68 E 0.099 0.003 0.183 0.152 0.328 0.235 69 M 0.409 0.016 0.040 0.090 0.118 0.326 70 I 0.745 0.011 0.004 0.022 0.044 0.174 71 E 0.812 0.008 0.002 0.006 0.024 0.148 72 V 0.534 0.011 0.002 0.004 0.041 0.407 73 E 0.310 0.005 0.003 0.003 0.126 0.552