# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2h3jA 75 3.67e-08 2gcxA 75 5.80e-08 2qq9A 226 6.97e-01 1fx7A 230 8.38e-01 1bi0 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1qw1A 121 9.38e-01 1bymA 97 9.58e-01 1bi0 b.34.1.2 24458 1t0yA 122 1.04e+00 d.15.1.1 99066 1y8xB 98 1.37e+00 1zelA 298 1.70e+00 1e0cA 271 1.86e+00 1e0cA c.46.1.2,c.46.1.2 32717,32718 1opd 85 1.97e+00 1ptf 1opdA 85 1.97e+00 d.94.1.1 40560 2hjhA 354 2.02e+00 2nwvA 114 2.57e+00 d.326.1.1 138720 2rcfA 91 2.83e+00 2qsfX 171 3.02e+00 2dtr 226 3.11e+00 1bi0 2dtrA 226 3.11e+00 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2dchX 216 3.37e+00 2bpsA 81 4.28e+00 1sphA 88 5.02e+00 1ptf d.94.1.1 40544 1egiA 147 5.19e+00 1eggA d.169.1.1 42331 1y8qB 640 5.88e+00 1iz6A 138 5.94e+00 b.34.5.2,b.40.4.5 76976,76977 1x1mA 107 6.33e+00 d.15.1.1 121592 1vz0A 230 9.38e+00 a.4.14.1,d.268.1.1 108929,108930 2hvqA 335 1.13e+01 1s68A 249 1.14e+01 d.142.2.4 98591 2qalM 117 1.34e+01 1genA 218 1.38e+01 b.66.1.1 27536 1dv0A 47 1.42e+01 1dv0A a.5.2.1 16289 2o8bA 934 1.53e+01 1y51A 88 1.55e+01 1xfsA 178 1.55e+01 d.129.3.5 109589 1dpeA 507 1.56e+01 c.94.1.1 35799 2vgeA 229 1.59e+01 1pea 385 1.63e+01 1pea 1peaA 385 1.63e+01 c.93.1.1 35662 1oebA 62 1.66e+01 b.34.2.1 86909 1sz7A 200 1.71e+01 1em8A 147 1.71e+01 c.128.1.1 90457 1jo0A 98 1.74e+01 d.68.4.1 77140 2ajtA 500 1.74e+01 b.43.2.2,c.85.1.2 126894,126895 1s9jA 341 1.76e+01 d.144.1.7 112049 1g8sA 230 1.80e+01 c.66.1.3 90507 1zx6A 58 1.80e+01 1v2yA 105 1.82e+01 d.15.1.1 100275 3c0cA 73 1.83e+01 1utiA 58 1.84e+01 b.34.2.1 99962 1go3F 107 1.89e+01 a.60.8.2 65407 2cxxA 190 1.91e+01 c.37.1.8 131013 1gcqA 61 1.91e+01 1ckaA b.34.2.1 60434 1bkb 136 1.92e+01 1bkb 1bkbA 136 1.92e+01 b.34.5.2,b.40.4.5 24609,25341 1ln4A 104 1.93e+01 d.68.4.1 74043 2fyqA 194 1.94e+01 1guiA 155 1.95e+01 b.18.1.14 76351 1fjgJ 105 2.11e+01 1fjfJ d.58.15.1 39330 1fbnA 230 2.17e+01 1fbnA c.66.1.3 34181 2if1A 126 2.20e+01 d.64.1.1 39547 2bjnA 160 2.29e+01 1knmA 130 2.29e+01 b.42.2.1 72781 2ggrA 76 2.37e+01 2fbhA 146 2.38e+01 a.4.5.28 133245 2iimA 62 2.39e+01 b.34.2.1 137434 2de0X 526 2.42e+01 2q30A 110 2.46e+01 1vg5A 73 2.55e+01 a.5.2.1 113640 2hpsA 186 2.58e+01 1z2mA 155 2.62e+01 d.15.1.1,d.15.1.1 124387,124388 1qvbA 481 2.70e+01 1qvbA c.1.8.4 28983 1lrzA 426 2.82e+01 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 1y8xA 160 2.86e+01 d.20.1.1 122769 2v8tA 302 2.99e+01 1wiwA 290 3.05e+01 c.80.1.1 114681 1db3A 372 3.12e+01 1db3A c.2.1.2 29813 1zh2A 121 3.17e+01 c.23.1.1 125069 2z1mA 345 3.29e+01 1o2dA 371 3.42e+01 e.22.1.2 86591 2cwlA 302 3.42e+01 a.25.1.3 130927 1hl9A 449 3.47e+01 b.71.1.3,c.1.8.11 90650,90651 1whzA 70 3.53e+01 d.50.3.2 114656 2p91A 285 3.54e+01 2d1hA 109 3.62e+01 a.4.5.50 131125 1x6mA 196 3.62e+01 b.88.1.4 114920 1z3eB 73 3.63e+01 a.60.3.1 124401 1zpvA 91 3.68e+01 d.58.18.7 125475 2uubJ 105 3.69e+01 d.58.15.1 139941 1pqhA 143 3.82e+01 b.52.2.1 95017 1nc7A 138 3.96e+01 b.123.1.1 85549 1b7yB 785 4.06e+01 1pysB a.6.1.1,a.6.1.1,b.40.4.4,d.58.13.1,d.104.1.1,b.153.1.1 16301,16302,25312,39311,40780,41456 1vr0A 247 4.15e+01 c.148.1.1 120428 1noaA 113 4.25e+01 b.1.7.1 22208 2cr5A 109 4.32e+01 d.15.1.2 130733 1rpnA 335 4.37e+01 c.2.1.2 97708 2o9sA 67 4.55e+01 2hazA 105 4.77e+01 b.1.2.1 136303 2o31A 67 4.88e+01 2vt8A 153 4.98e+01 2re3A 194 5.02e+01 1pch 88 5.03e+01 1ptf 1pchA 88 5.03e+01 d.94.1.1 40564 1r1gA 31 5.04e+01 g.3.7.2 96816 1befA 181 5.19e+01 1befA b.47.1.3 26419 2iayA 114 5.32e+01 1wr1B 58 5.36e+01 a.5.2.1 121185 2yyvA 227 5.43e+01 2a38A 194 5.57e+01 2f1fA 164 5.61e+01 d.58.18.6,d.58.18.6 132760,132761 1md6A 154 5.70e+01 b.42.1.2 91242 1z9tA 255 5.72e+01 1j3bA 529 5.72e+01 c.91.1.1,c.109.1.1 77071,77072 2a0iA 330 5.73e+01 1pexA 207 5.74e+01 b.66.1.1 27540 1vqoK 132 5.87e+01 b.39.1.1 120372 2nqoB 188 5.89e+01 2g5cA 281 5.95e+01 a.100.1.12,c.2.1.6 134646,134647 1lzlA 323 5.97e+01 c.69.1.2 78306 2jxyA 194 6.01e+01 2e7dA 131 6.09e+01 2drmA 58 6.14e+01 2a1iA 146 6.25e+01 c.52.1.20 125999 2p19A 149 6.27e+01 2q0oC 107 6.38e+01 2vdwA 302 6.40e+01 2qpqA 301 6.52e+01 1zd7A 159 6.54e+01 3cjxA 165 6.54e+01 2vqeJ 105 6.59e+01 1ghpA 258 6.65e+01 1btl e.3.1.1 60520 1kpfA 125 6.65e+01 d.13.1.1 37507 2qmcB 188 6.65e+01 1kpf 126 6.76e+01 1kpf 1f3uB 171 6.79e+01 1f3uB b.65.1.1 27525 1k5nA 276 7.11e+01 b.1.1.2,d.19.1.1 77266,77267 1dcjA 81 7.18e+01 1dcjA d.68.3.3 59115 1ifyA 49 7.21e+01 a.5.2.1 71207 2bwbA 46 7.22e+01 a.5.2.1 129329 2nsnA 95 7.25e+01 2i7rA 118 7.36e+01 d.32.1.2 137102 1h80A 464 7.37e+01 b.80.1.8 65714 1xxaA 78 7.54e+01 1xxaA d.74.2.1 39700 1mkyA 439 7.56e+01 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 1yhvA 297 7.59e+01 1d2zB 153 7.73e+01 1d2zB a.77.1.2 18439 2dklA 85 7.86e+01 a.5.2.1 131555 3bpuA 88 7.88e+01 1uheA 97 7.90e+01 1qdeA 224 7.93e+01 1qvaA c.37.1.19 32410