PFRMAT RR TARGET T0492 AUTHOR SAM-T06-server REMARK From group SAM-TO6 under the direction of REMARK Kevin Karplus. REMARK Residue-residue contact predictions REMARK by George Shackelford and Kevin Karplus REMARK The value given is an approximation of the probability REMARK as provided by the neural network. REMARK The predictions are limited to a score >= .18 which REMARK is an approximation of the probability. REMARK METHOD The predictor is an artificial neural network. METHOD NN: logseploglen.5xt04_ent.5xnearNS_str2.miRpz_entR_pplR.n45.net METHOD Inputs may include separation and sequence length, METHOD e-value statistic based on mutual information values, METHOD a statistic based on propensity of residues in contact. METHOD Other inputs are distributions from alignments and METHOD secondary predictions from SAM-t04 and/or SAM-t06 of METHOD the University of California, Santa Cruz MODEL 1 MFSLRDAKCGQTVKVVKLHGTGALKRRIMDMGITRGCEIYIRKVAPLGDP IQINVRGYELSLRKSAAEMIEVE 3 13 0 8 0.824229 3 15 0 8 0.785915 3 16 0 8 0.82935 3 18 0 8 0.784509 3 19 0 8 0.76035 3 20 0 8 0.720355 3 21 0 8 0.630238 3 40 0 8 0.836485 3 41 0 8 0.811422 3 42 0 8 0.753649 3 44 0 8 0.808361 3 52 0 8 0.669152 4 13 0 8 0.889786 4 14 0 8 0.890697 4 15 0 8 0.88564 4 16 0 8 0.905642 4 17 0 8 0.791293 4 18 0 8 0.90082 4 19 0 8 0.735725 4 20 0 8 0.792122 4 21 0 8 0.659492 4 24 0 8 0.833156 4 25 0 8 0.752769 4 27 0 8 0.826066 4 28 0 8 0.814609 4 29 0 8 0.687415 4 31 0 8 0.802984 4 32 0 8 0.615406 4 33 0 8 0.742314 4 34 0 8 0.639083 4 35 0 8 0.72248 4 36 0 8 0.735433 4 37 0 8 0.771689 4 38 0 8 0.829215 4 39 0 8 0.882093 4 40 0 8 0.84839 4 41 0 8 0.8686 4 42 0 8 0.8894 4 43 0 8 0.776367 4 44 0 8 0.778238 4 45 0 8 0.695049 4 49 0 8 0.780432 4 50 0 8 0.784826 4 51 0 8 0.871876 4 52 0 8 0.792273 4 53 0 8 0.848654 4 54 0 8 0.709052 4 55 0 8 0.792692 4 56 0 8 0.802641 4 57 0 8 0.706365 4 58 0 8 0.769919 4 59 0 8 0.725106 4 60 0 8 0.828016 4 61 0 8 0.622956 4 62 0 8 0.789876 4 67 0 8 0.702425 4 70 0 8 0.768089 5 15 0 8 0.73999 5 16 0 8 0.857224 5 18 0 8 0.77369 5 19 0 8 0.697005 5 20 0 8 0.655525 5 24 0 8 0.783192 5 27 0 8 0.709087 5 34 0 8 0.635714 5 37 0 8 0.730492 5 38 0 8 0.741224 5 39 0 8 0.713421 5 40 0 8 0.823414 5 41 0 8 0.732431 5 44 0 8 0.695615 5 45 0 8 0.678713 5 49 0 8 0.75852 5 50 0 8 0.608039 5 52 0 8 0.664908 5 54 0 8 0.640238 5 56 0 8 0.714626 5 57 0 8 0.659234 5 58 0 8 0.646917 5 59 0 8 0.685422 5 63 0 8 0.711599 5 66 0 8 0.721592 6 15 0 8 0.701509 6 16 0 8 0.850085 6 23 0 8 0.612775 6 41 0 8 0.737604 6 43 0 8 0.746198 6 44 0 8 0.807927 6 45 0 8 0.743702 6 52 0 8 0.752204 6 54 0 8 0.759638 6 63 0 8 0.629228 7 16 0 8 0.86215 7 17 0 8 0.803348 7 18 0 8 0.815467 7 20 0 8 0.675134 7 24 0 8 0.795333 7 25 0 8 0.717397 7 27 0 8 0.725356 7 28 0 8 0.790018 7 29 0 8 0.703634 7 31 0 8 0.82708 7 33 0 8 0.692279 7 34 0 8 0.693042 7 35 0 8 0.67048 7 37 0 8 0.772758 7 39 0 8 0.84866 7 40 0 8 0.78104 7 41 0 8 0.80061 7 42 0 8 0.795766 7 43 0 8 0.733779 7 44 0 8 0.708442 7 45 0 8 0.714074 7 49 0 8 0.704655 7 50 0 8 0.804408 7 51 0 8 0.784792 7 52 0 8 0.702625 7 53 0 8 0.778674 7 54 0 8 0.772224 7 55 0 8 0.800497 7 56 0 8 0.74178 7 58 0 8 0.710882 7 59 0 8 0.639704 7 60 0 8 0.706123 7 61 0 8 0.601209 7 62 0 8 0.78286 7 63 0 8 0.632362 7 66 0 8 0.608571 8 17 0 8 0.722405 8 19 0 8 0.619775 9 18 0 8 0.746647 9 19 0 8 0.829537 9 20 0 8 0.808769 9 21 0 8 0.811149 9 24 0 8 0.684137 9 31 0 8 0.629057 9 34 0 8 0.68377 9 35 0 8 0.661526 9 39 0 8 0.721706 9 41 0 8 0.813012 9 42 0 8 0.743002 9 43 0 8 0.745341 9 44 0 8 0.834257 9 45 0 8 0.757038 9 49 0 8 0.802793 9 50 0 8 0.787595 9 51 0 8 0.678925 9 52 0 8 0.75326 9 53 0 8 0.609751 9 55 0 8 0.69364 9 60 0 8 0.622277 10 20 0 8 0.78614 10 38 0 8 0.718755 10 41 0 8 0.749023 10 42 0 8 0.682903 10 43 0 8 0.702262 10 50 0 8 0.657326 10 56 0 8 0.650699 11 20 0 8 0.83556 11 21 0 8 0.75237 11 24 0 8 0.706437 11 31 0 8 0.603464 11 34 0 8 0.694594 11 43 0 8 0.832956 11 44 0 8 0.850446 11 50 0 8 0.696844 11 51 0 8 0.725117 11 56 0 8 0.826554 12 21 0 8 0.840903 12 35 0 8 0.730823 12 38 0 8 0.791992 12 39 0 8 0.839605 12 40 0 8 0.888906 12 41 0 8 0.824026 12 43 0 8 0.864347 12 44 0 8 0.835933 12 45 0 8 0.834266 12 49 0 8 0.712804 12 50 0 8 0.674878 12 51 0 8 0.783735 12 52 0 8 0.79613 12 53 0 8 0.746074 12 54 0 8 0.86312 12 55 0 8 0.723202 12 56 0 8 0.834976 12 57 0 8 0.746349 12 59 0 8 0.608078 12 60 0 8 0.77246 12 63 0 8 0.731341 13 24 0 8 0.829871 13 27 0 8 0.756257 13 28 0 8 0.724412 13 29 0 8 0.655324 13 31 0 8 0.830218 13 33 0 8 0.724383 13 34 0 8 0.725756 13 37 0 8 0.815758 13 38 0 8 0.826219 13 39 0 8 0.928062 13 40 0 8 0.882203 13 41 0 8 0.906643 13 42 0 8 0.866389 13 43 0 8 0.884593 13 44 0 8 0.856711 13 45 0 8 0.804069 13 47 0 8 0.614837 13 49 0 8 0.692917 13 50 0 8 0.859588 13 51 0 8 0.859695 13 52 0 8 0.90004 13 53 0 8 0.859284 13 54 0 8 0.857539 13 55 0 8 0.802409 13 56 0 8 0.776322 13 57 0 8 0.744103 13 58 0 8 0.785066 13 59 0 8 0.652216 13 60 0 8 0.782993 13 61 0 8 0.798723 13 62 0 8 0.715864 13 63 0 8 0.751419 13 71 0 8 0.603264 14 23 0 8 0.872614 14 24 0 8 0.886191 14 27 0 8 0.893773 14 28 0 8 0.848477 14 29 0 8 0.866525 14 31 0 8 0.854157 14 32 0 8 0.844465 14 33 0 8 0.880289 14 34 0 8 0.901243 14 35 0 8 0.898312 14 36 0 8 0.881056 14 38 0 8 0.926932 14 39 0 8 0.905158 14 41 0 8 0.905541 14 42 0 8 0.904734 14 44 0 8 0.897987 14 45 0 8 0.891166 14 47 0 8 0.871313 14 50 0 8 0.905652 14 51 0 8 0.909917 14 52 0 8 0.904011 14 53 0 8 0.89455 14 54 0 8 0.914062 14 55 0 8 0.896558 14 57 0 8 0.87651 14 58 0 8 0.899475 14 60 0 8 0.885067 14 61 0 8 0.903388 14 62 0 8 0.852518 14 63 0 8 0.861569 14 64 0 8 0.846043 14 65 0 8 0.809451 14 66 0 8 0.829755 14 67 0 8 0.849651 14 68 0 8 0.824558 14 70 0 8 0.831895 15 24 0 8 0.864797 15 25 0 8 0.805073 15 26 0 8 0.674307 15 27 0 8 0.808951 15 28 0 8 0.8575 15 29 0 8 0.721094 15 31 0 8 0.865696 15 32 0 8 0.727265 15 33 0 8 0.887272 15 34 0 8 0.837588 15 35 0 8 0.803141 15 36 0 8 0.789757 15 37 0 8 0.859288 15 38 0 8 0.872294 15 39 0 8 0.937254 15 40 0 8 0.901042 15 41 0 8 0.925624 15 42 0 8 0.902713 15 43 0 8 0.894148 15 44 0 8 0.85585 15 45 0 8 0.836262 15 46 0 8 0.644087 15 47 0 8 0.785535 15 48 0 8 0.769797 15 49 0 8 0.80315 15 50 0 8 0.819241 15 51 0 8 0.904926 15 52 0 8 0.89191 15 53 0 8 0.922001 15 55 0 8 0.931696 15 56 0 8 0.878547 15 57 0 8 0.818975 15 58 0 8 0.855681 15 59 0 8 0.844692 15 60 0 8 0.913593 15 61 0 8 0.85228 15 62 0 8 0.884687 15 63 0 8 0.807452 15 67 0 8 0.686978 15 70 0 8 0.906389 15 71 0 8 0.675605 16 25 0 8 0.777694 16 26 0 8 0.741852 16 27 0 8 0.797271 16 29 0 8 0.632578 16 30 0 8 0.718998 16 31 0 8 0.628514 16 32 0 8 0.661998 16 33 0 8 0.619114 16 34 0 8 0.778822 16 35 0 8 0.729004 16 36 0 8 0.807178 16 37 0 8 0.833762 16 38 0 8 0.886676 16 39 0 8 0.859245 16 40 0 8 0.900313 16 41 0 8 0.885941 16 42 0 8 0.876421 16 45 0 8 0.823293 16 47 0 8 0.648272 16 50 0 8 0.823516 16 51 0 8 0.84416 16 52 0 8 0.860022 16 53 0 8 0.816011 16 54 0 8 0.868222 16 55 0 8 0.721498 16 59 0 8 0.856051 16 60 0 8 0.813458 16 61 0 8 0.778376 16 62 0 8 0.751463 16 63 0 8 0.767467 16 71 0 8 0.753818 17 36 0 8 0.706982 17 40 0 8 0.871305 17 41 0 8 0.840312 17 42 0 8 0.816551 17 44 0 8 0.777478 17 56 0 8 0.696044 18 27 0 8 0.849883 18 28 0 8 0.781881 18 29 0 8 0.774682 18 30 0 8 0.726965 18 31 0 8 0.801205 18 33 0 8 0.70426 18 34 0 8 0.751272 18 35 0 8 0.698093 18 37 0 8 0.803118 18 38 0 8 0.845101 18 39 0 8 0.910249 18 40 0 8 0.868379 18 41 0 8 0.895926 18 42 0 8 0.870155 18 43 0 8 0.812695 18 44 0 8 0.77386 18 45 0 8 0.772789 18 49 0 8 0.828121 18 50 0 8 0.815299 18 51 0 8 0.84002 18 52 0 8 0.746712 18 53 0 8 0.852472 18 55 0 8 0.807692 18 56 0 8 0.804096 18 58 0 8 0.750086 18 59 0 8 0.774967 18 60 0 8 0.849272 18 61 0 8 0.65278 18 62 0 8 0.780556 18 63 0 8 0.608931 18 70 0 8 0.622263 19 35 0 8 0.804233 19 36 0 8 0.658837 19 37 0 8 0.765853 19 40 0 8 0.845429 19 42 0 8 0.803308 19 44 0 8 0.813494 19 49 0 8 0.719661 19 52 0 8 0.672107 19 54 0 8 0.767935 19 59 0 8 0.617422 20 29 0 8 0.673568 20 30 0 8 0.744836 20 34 0 8 0.712231 20 36 0 8 0.654905 20 39 0 8 0.696366 20 40 0 8 0.808492 20 41 0 8 0.811107 20 42 0 8 0.79034 20 43 0 8 0.768573 20 44 0 8 0.745683 20 45 0 8 0.632619 20 50 0 8 0.710958 20 51 0 8 0.691818 20 52 0 8 0.805253 20 53 0 8 0.675356 20 54 0 8 0.695929 20 57 0 8 0.79157 20 58 0 8 0.765813 20 59 0 8 0.813694 20 60 0 8 0.656497 21 35 0 8 0.699399 21 38 0 8 0.777607 21 43 0 8 0.643938 21 44 0 8 0.641625 21 49 0 8 0.66466 21 50 0 8 0.617448 21 51 0 8 0.630952 21 63 0 8 0.687158 22 44 0 8 0.677108 22 49 0 8 0.633186 22 56 0 8 0.628135 24 37 0 8 0.71247 24 38 0 8 0.725224 24 39 0 8 0.869352 24 41 0 8 0.861804 24 42 0 8 0.780685 24 43 0 8 0.710443 24 49 0 8 0.612149 24 50 0 8 0.790997 24 51 0 8 0.787521 24 52 0 8 0.672744 24 53 0 8 0.79712 24 55 0 8 0.628507 24 60 0 8 0.708653 24 61 0 8 0.736448 24 62 0 8 0.605802 24 66 0 8 0.624187 25 34 0 8 0.677124 25 38 0 8 0.685336 25 39 0 8 0.676193 25 40 0 8 0.739199 25 41 0 8 0.754917 25 43 0 8 0.68668 25 45 0 8 0.607576 25 52 0 8 0.643637 25 53 0 8 0.601995 25 54 0 8 0.67686 27 37 0 8 0.623036 27 38 0 8 0.765246 27 40 0 8 0.813966 27 41 0 8 0.614921 27 42 0 8 0.670981 27 43 0 8 0.709278 27 49 0 8 0.640703 27 50 0 8 0.795511 27 51 0 8 0.635258 27 52 0 8 0.714713 27 56 0 8 0.685597 28 37 0 8 0.839458 28 38 0 8 0.773171 28 39 0 8 0.896115 28 40 0 8 0.824632 28 41 0 8 0.919584 28 42 0 8 0.807186 28 43 0 8 0.698091 28 50 0 8 0.766632 28 51 0 8 0.854002 28 52 0 8 0.705962 28 53 0 8 0.88941 28 55 0 8 0.823292 28 56 0 8 0.639907 28 59 0 8 0.640122 28 60 0 8 0.855866 28 62 0 8 0.803483 29 39 0 8 0.774652 29 40 0 8 0.755638 29 41 0 8 0.755449 29 42 0 8 0.686701 29 43 0 8 0.766064 29 44 0 8 0.62985 29 45 0 8 0.633898 29 51 0 8 0.667649 29 52 0 8 0.73082 29 53 0 8 0.694932 29 58 0 8 0.698277 29 60 0 8 0.705942 30 40 0 8 0.824922 30 52 0 8 0.642608 30 54 0 8 0.688817 30 56 0 8 0.632805 31 41 0 8 0.90255 31 42 0 8 0.845146 31 43 0 8 0.852986 31 44 0 8 0.730527 31 45 0 8 0.707953 31 47 0 8 0.627043 31 49 0 8 0.757819 31 50 0 8 0.793673 31 51 0 8 0.850778 31 52 0 8 0.814146 31 53 0 8 0.882976 31 54 0 8 0.824832 31 55 0 8 0.858492 31 58 0 8 0.756496 31 59 0 8 0.620943 31 60 0 8 0.833536 31 61 0 8 0.825656 31 62 0 8 0.809349 31 63 0 8 0.605964 32 41 0 8 0.783977 32 42 0 8 0.816781 32 43 0 8 0.64482 32 44 0 8 0.692317 32 45 0 8 0.619155 32 50 0 8 0.702569 32 51 0 8 0.680475 32 54 0 8 0.780817 32 55 0 8 0.738563 32 56 0 8 0.728189 32 62 0 8 0.678375 33 42 0 8 0.856663 33 43 0 8 0.850866 33 44 0 8 0.77027 33 50 0 8 0.745592 33 51 0 8 0.881028 33 52 0 8 0.8715 33 53 0 8 0.825205 33 54 0 8 0.812259 33 55 0 8 0.784967 33 56 0 8 0.611851 33 58 0 8 0.716737 33 59 0 8 0.655079 33 60 0 8 0.874018 33 62 0 8 0.773562 34 44 0 8 0.818554 34 45 0 8 0.732696 34 46 0 8 0.623501 34 47 0 8 0.6456 34 49 0 8 0.825664 34 50 0 8 0.705762 34 51 0 8 0.669907 34 52 0 8 0.780294 34 53 0 8 0.686671 34 54 0 8 0.742043 34 56 0 8 0.776427 34 58 0 8 0.641183 34 59 0 8 0.609315 34 63 0 8 0.682667 35 44 0 8 0.855036 35 45 0 8 0.782793 35 49 0 8 0.779539 35 50 0 8 0.61698 35 56 0 8 0.805466 35 58 0 8 0.726672 35 59 0 8 0.67025 35 63 0 8 0.729229 36 45 0 8 0.79866 36 46 0 8 0.693278 36 47 0 8 0.657933 36 49 0 8 0.690914 36 50 0 8 0.79944 36 51 0 8 0.657301 36 52 0 8 0.670293 36 54 0 8 0.85061 36 55 0 8 0.723361 36 56 0 8 0.803841 36 61 0 8 0.689374 36 63 0 8 0.633718 37 47 0 8 0.696173 37 49 0 8 0.758396 37 50 0 8 0.774351 37 51 0 8 0.825395 37 52 0 8 0.831903 37 53 0 8 0.859596 37 55 0 8 0.8581 37 56 0 8 0.919285 37 57 0 8 0.693035 37 59 0 8 0.749954 37 60 0 8 0.868518 37 62 0 8 0.737682 37 64 0 8 0.67527 38 49 0 8 0.847532 38 50 0 8 0.837728 38 51 0 8 0.850841 38 52 0 8 0.855266 38 53 0 8 0.835828 38 55 0 8 0.861504 38 58 0 8 0.819195 38 59 0 8 0.821455 38 60 0 8 0.808425 38 61 0 8 0.868571 38 63 0 8 0.840599 38 71 0 8 0.720253 39 48 0 8 0.682857 39 49 0 8 0.786474 39 50 0 8 0.858669 39 51 0 8 0.911631 39 52 0 8 0.884182 39 53 0 8 0.930606 39 54 0 8 0.908911 39 55 0 8 0.938196 39 56 0 8 0.874274 39 57 0 8 0.771747 39 58 0 8 0.852784 39 59 0 8 0.812111 39 60 0 8 0.912994 39 61 0 8 0.841608 39 62 0 8 0.873069 39 63 0 8 0.743247 39 70 0 8 0.861737 39 71 0 8 0.68689 40 50 0 8 0.908959 40 51 0 8 0.919137 40 52 0 8 0.919974 40 54 0 8 0.933279 40 56 0 8 0.904284 40 58 0 8 0.911132 40 63 0 8 0.868481 40 64 0 8 0.786586 40 65 0 8 0.673867 40 66 0 8 0.728532 40 67 0 8 0.778207 40 70 0 8 0.826406 40 71 0 8 0.821948 41 50 0 8 0.870116 41 51 0 8 0.92057 41 52 0 8 0.893411 41 53 0 8 0.93755 41 55 0 8 0.870495 41 56 0 8 0.848799 41 57 0 8 0.771986 41 58 0 8 0.829597 41 59 0 8 0.910282 41 60 0 8 0.918344 41 61 0 8 0.785059 41 62 0 8 0.863884 41 63 0 8 0.744518 41 71 0 8 0.723679 42 51 0 8 0.90202 42 52 0 8 0.916052 42 53 0 8 0.907789 42 54 0 8 0.897351 42 55 0 8 0.840914 42 58 0 8 0.885152 42 59 0 8 0.905365 42 60 0 8 0.870164 42 61 0 8 0.847811 42 62 0 8 0.789384 42 63 0 8 0.783544 42 69 0 8 0.817208 42 71 0 8 0.802561 43 52 0 8 0.915758 43 53 0 8 0.903729 43 55 0 8 0.810008 43 56 0 8 0.90786 43 57 0 8 0.840458 43 58 0 8 0.848962 43 59 0 8 0.881937 43 60 0 8 0.847058 43 61 0 8 0.799138 43 63 0 8 0.870903 43 66 0 8 0.73219 43 69 0 8 0.66445 43 71 0 8 0.751601 44 53 0 8 0.881328 44 54 0 8 0.874605 44 55 0 8 0.68474 44 56 0 8 0.86757 44 58 0 8 0.793564 44 59 0 8 0.809779 44 60 0 8 0.777101 44 63 0 8 0.857786 45 54 0 8 0.865993 45 56 0 8 0.783056 45 58 0 8 0.854233 45 59 0 8 0.803863 45 60 0 8 0.880618 45 61 0 8 0.793696 45 63 0 8 0.840255 45 66 0 8 0.756361 46 58 0 8 0.703 46 63 0 8 0.731745 47 56 0 8 0.764404 47 57 0 8 0.732653 47 58 0 8 0.789279 47 59 0 8 0.690061 47 60 0 8 0.690746 47 61 0 8 0.699885 47 63 0 8 0.771877 47 64 0 8 0.682765 48 57 0 8 0.673462 48 58 0 8 0.668487 48 60 0 8 0.677665 48 61 0 8 0.718344 48 63 0 8 0.715881 49 58 0 8 0.803039 49 59 0 8 0.792615 49 60 0 8 0.788781 49 61 0 8 0.866244 49 63 0 8 0.9092 49 64 0 8 0.657237 49 66 0 8 0.6584 50 59 0 8 0.829463 50 60 0 8 0.868838 50 61 0 8 0.885418 50 62 0 8 0.821681 50 63 0 8 0.89532 50 64 0 8 0.698503 50 66 0 8 0.64506 50 71 0 8 0.736339 51 60 0 8 0.894465 51 61 0 8 0.835976 51 62 0 8 0.867531 51 63 0 8 0.860772 51 64 0 8 0.782649 51 66 0 8 0.711483 51 67 0 8 0.744511 51 71 0 8 0.733076 52 61 0 8 0.883314 52 62 0 8 0.851786 52 63 0 8 0.884247 52 64 0 8 0.721885 52 65 0 8 0.678362 52 66 0 8 0.66373 52 69 0 8 0.618287 52 71 0 8 0.77108 53 62 0 8 0.869035 53 63 0 8 0.837671 53 64 0 8 0.702344 53 66 0 8 0.729945 53 67 0 8 0.748329 53 70 0 8 0.62159 53 71 0 8 0.716329 54 63 0 8 0.811927 54 64 0 8 0.721694 54 68 0 8 0.604277 55 70 0 8 0.741991 58 71 0 8 0.729137 59 71 0 8 0.715052 60 69 0 8 0.650192 60 70 0 8 0.65408 60 71 0 8 0.743655 61 71 0 8 0.71503 END