# List of template models which gave the target the best scores. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Template_ID Template_Length Template_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2gcxA 76 6.202e-13 2h3jA 76 1.715e-11 1fx7A 231 4.582e-04 1bi0 a.4.5.24 60088 a.76.1.1 60089 b.34.1.2 60090 2qq9A 213 7.843e-04 2dtrA 215 2.637e-03 a.4.5.24 16193 a.76.1.1 18399 b.34.1.2 24450 1qw1A 122 1.427e-01 2dtr 215 4.349e-01 1bi0 1bymA 98 1.268e+00 1bi0 b.34.1.2 24458 2prxA 115 1.781e+00 1aa0A 114 4.080e+00 h.1.17.1 45659 1bi0 215 4.239e+00 1bi0 2ds2A 27 4.732e+00 1y8xB 93 7.076e+00 1pnhA 32 1.476e+01 g.3.7.2 44162 1h3oA 50 1.576e+01 a.22.1.3 76644 1yukA 95 1.809e+01 1xe1A 92 2.106e+01 b.43.3.1 109571 1ojqA 213 2.384e+01 d.166.1.1 93146 1p9kA 80 2.424e+01 d.66.1.6 94392 1clcA 542 2.653e+01 a.102.1.2 18835 b.1.18.2 21872 1wo8A 127 2.805e+01 c.24.1.2 121110 1s6dA 104 2.846e+01 a.52.1.3 105307 1auoA 219 2.906e+01 1auoA c.69.1.14 34716 1dxgA 37 2.976e+01 1dxgA g.41.5.2 45247 2o8mC 24 3.126e+01 2ownA 257 3.164e+01 1u5xA 131 3.283e+01 b.22.1.1 113055 1ve0A 135 3.499e+01 1du1A 21 3.587e+01 j.68.1.1 46361 2essA 244 3.731e+01 d.38.1.8 132346 d.38.1.8 132347 1pfsA 79 3.823e+01 1pfsA b.40.4.7 25391