# TARGET T0492 # Using neural net dunbrack-40pc-3157-t2k-IDGaaH13-3-13-7-13-9-13-11-pb-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 16 (1 pb ) # The input amino acid frequencies were determined from # alignment T0492.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 38.1747 # Pos AA A B C D E F G H I J K L M N O P 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.049 0.076 0.282 0.380 0.005 0.037 0.014 0.004 0.010 0.002 0.022 0.017 0.063 0.002 0.006 0.031 2 F 0.016 0.049 0.335 0.518 0.003 0.014 0.004 0.004 0.002 0.002 0.006 0.011 0.026 0.001 0.002 0.011 3 S 0.003 0.005 0.017 0.058 0.007 0.869 0.002 0.002 0.001 0.001 0.004 0.005 0.025 0.001 0.001 0.002 4 L 0.002 0.019 0.005 0.019 0.010 0.023 0.002 0.002 0.001 0.001 0.883 0.005 0.026 0.003 0.001 0.001 5 R 0.002 0.158 0.004 0.045 0.001 0.011 0.001 0.015 0.003 0.001 0.008 0.708 0.029 0.001 0.013 0.001 6 D 0.012 0.037 0.096 0.104 0.002 0.017 0.043 0.001 0.034 0.004 0.015 0.009 0.239 0.007 0.007 0.372 7 A 0.145 0.018 0.515 0.082 0.007 0.013 0.030 0.005 0.002 0.001 0.014 0.010 0.115 0.001 0.013 0.029 8 K 0.002 0.004 0.054 0.016 0.555 0.020 0.164 0.003 0.001 0.001 0.003 0.004 0.006 0.167 0.001 0.001 9 C 0.004 0.015 0.007 0.045 0.005 0.014 0.003 0.742 0.002 0.001 0.011 0.001 0.004 0.001 0.145 0.001 10 G 0.002 0.029 0.007 0.048 0.003 0.007 0.002 0.002 0.695 0.070 0.003 0.004 0.002 0.001 0.001 0.126 11 Q 0.884 0.013 0.019 0.070 0.001 0.003 0.001 0.001 0.002 0.001 0.002 0.002 0.001 0.001 0.001 0.002 12 T 0.007 0.109 0.674 0.200 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 13 V 0.005 0.004 0.129 0.858 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 14 K 0.002 0.004 0.072 0.921 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 15 V 0.001 0.001 0.003 0.154 0.341 0.500 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 16 V 0.001 0.661 0.001 0.253 0.001 0.002 0.001 0.078 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 17 K 0.002 0.010 0.002 0.722 0.009 0.089 0.001 0.001 0.087 0.066 0.002 0.007 0.001 0.001 0.001 0.004 18 L 0.136 0.022 0.367 0.131 0.230 0.032 0.018 0.019 0.001 0.001 0.035 0.003 0.003 0.002 0.001 0.001 19 H 0.001 0.182 0.021 0.360 0.028 0.233 0.003 0.122 0.010 0.005 0.011 0.014 0.003 0.001 0.005 0.002 20 G 0.002 0.013 0.003 0.031 0.501 0.142 0.016 0.012 0.009 0.111 0.116 0.025 0.005 0.011 0.001 0.002 21 T 0.026 0.043 0.013 0.034 0.007 0.060 0.003 0.312 0.010 0.006 0.191 0.169 0.057 0.001 0.067 0.002 22 G 0.002 0.008 0.005 0.007 0.001 0.052 0.001 0.002 0.048 0.090 0.262 0.324 0.175 0.001 0.001 0.022 23 A 0.038 0.013 0.004 0.004 0.001 0.012 0.001 0.001 0.001 0.001 0.114 0.548 0.262 0.001 0.001 0.002 24 L 0.001 0.003 0.012 0.005 0.001 0.004 0.001 0.001 0.001 0.001 0.034 0.206 0.733 0.001 0.001 0.001 25 K 0.001 0.001 0.004 0.003 0.001 0.002 0.001 0.001 0.001 0.001 0.002 0.024 0.964 0.001 0.001 0.001 26 R 0.001 0.001 0.002 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.987 0.001 0.001 0.001 27 R 0.001 0.001 0.001 0.002 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.004 0.989 0.001 0.001 0.001 28 I 0.001 0.001 0.001 0.002 0.001 0.001 0.003 0.001 0.001 0.001 0.005 0.001 0.972 0.013 0.001 0.001 29 M 0.001 0.002 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.016 0.946 0.006 0.020 0.002 30 D 0.001 0.001 0.001 0.001 0.002 0.001 0.020 0.001 0.001 0.001 0.001 0.003 0.278 0.651 0.003 0.036 31 M 0.009 0.002 0.011 0.002 0.001 0.001 0.003 0.010 0.001 0.001 0.002 0.001 0.090 0.005 0.856 0.009 32 G 0.005 0.008 0.081 0.011 0.001 0.002 0.014 0.001 0.016 0.011 0.002 0.003 0.067 0.006 0.011 0.760 33 I 0.654 0.013 0.160 0.046 0.015 0.005 0.016 0.002 0.001 0.001 0.003 0.002 0.037 0.003 0.004 0.039 34 T 0.001 0.003 0.065 0.014 0.625 0.017 0.178 0.003 0.001 0.001 0.001 0.001 0.002 0.087 0.001 0.001 35 R 0.002 0.032 0.007 0.028 0.003 0.036 0.003 0.798 0.001 0.001 0.009 0.001 0.002 0.001 0.076 0.001 36 G 0.002 0.037 0.002 0.038 0.001 0.004 0.001 0.002 0.771 0.089 0.005 0.005 0.001 0.001 0.001 0.045 37 C 0.898 0.009 0.017 0.067 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.004 0.001 0.001 0.001 0.002 38 E 0.006 0.008 0.872 0.108 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 39 I 0.002 0.005 0.133 0.841 0.003 0.015 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 40 Y 0.001 0.006 0.007 0.983 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 41 I 0.001 0.002 0.003 0.626 0.129 0.234 0.001 0.002 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 42 R 0.001 0.212 0.003 0.715 0.008 0.013 0.001 0.034 0.002 0.001 0.009 0.002 0.001 0.001 0.001 0.001 43 K 0.002 0.022 0.004 0.715 0.011 0.170 0.001 0.009 0.018 0.021 0.008 0.013 0.004 0.001 0.001 0.002 44 V 0.045 0.169 0.171 0.441 0.024 0.020 0.007 0.025 0.017 0.004 0.033 0.014 0.013 0.001 0.004 0.010 45 A 0.014 0.026 0.053 0.450 0.068 0.258 0.017 0.011 0.016 0.011 0.016 0.019 0.029 0.001 0.003 0.007 46 P 0.002 0.009 0.010 0.014 0.779 0.017 0.040 0.011 0.001 0.002 0.026 0.004 0.003 0.082 0.001 0.001 47 L 0.003 0.029 0.005 0.047 0.010 0.008 0.005 0.669 0.009 0.002 0.011 0.009 0.002 0.002 0.189 0.001 48 G 0.004 0.025 0.034 0.051 0.001 0.004 0.004 0.004 0.448 0.102 0.003 0.003 0.004 0.001 0.004 0.310 49 D 0.882 0.006 0.029 0.033 0.001 0.027 0.001 0.001 0.004 0.002 0.002 0.002 0.003 0.001 0.001 0.007 50 P 0.047 0.167 0.510 0.144 0.002 0.065 0.001 0.002 0.002 0.001 0.045 0.006 0.004 0.001 0.001 0.003 51 I 0.007 0.188 0.051 0.719 0.001 0.009 0.001 0.001 0.001 0.001 0.002 0.020 0.001 0.001 0.001 0.001 52 Q 0.002 0.007 0.125 0.859 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 53 I 0.002 0.003 0.089 0.885 0.008 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 54 N 0.001 0.014 0.021 0.719 0.193 0.043 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 55 V 0.001 0.005 0.001 0.128 0.673 0.138 0.011 0.027 0.001 0.002 0.010 0.001 0.001 0.003 0.001 0.001 56 R 0.001 0.130 0.002 0.048 0.006 0.039 0.001 0.723 0.015 0.004 0.013 0.005 0.001 0.001 0.014 0.001 57 G 0.011 0.045 0.004 0.087 0.001 0.005 0.001 0.003 0.663 0.104 0.014 0.015 0.001 0.001 0.001 0.048 58 Y 0.663 0.013 0.201 0.094 0.001 0.004 0.001 0.001 0.003 0.001 0.002 0.011 0.003 0.001 0.001 0.003 59 E 0.009 0.018 0.640 0.267 0.003 0.046 0.001 0.001 0.001 0.001 0.003 0.003 0.006 0.001 0.001 0.002 60 L 0.003 0.018 0.051 0.854 0.008 0.043 0.001 0.003 0.001 0.001 0.006 0.004 0.008 0.001 0.001 0.001 61 S 0.001 0.029 0.015 0.817 0.028 0.073 0.002 0.002 0.001 0.001 0.005 0.012 0.011 0.001 0.001 0.001 62 L 0.004 0.054 0.024 0.708 0.023 0.070 0.004 0.020 0.002 0.001 0.034 0.012 0.041 0.001 0.001 0.002 63 R 0.001 0.014 0.006 0.042 0.024 0.774 0.005 0.008 0.003 0.007 0.024 0.040 0.049 0.002 0.001 0.002 64 K 0.003 0.032 0.003 0.015 0.004 0.014 0.001 0.019 0.002 0.001 0.804 0.034 0.061 0.001 0.005 0.002 65 S 0.001 0.007 0.001 0.004 0.001 0.006 0.001 0.001 0.002 0.001 0.014 0.917 0.043 0.001 0.001 0.002 66 A 0.005 0.014 0.018 0.011 0.001 0.004 0.002 0.001 0.001 0.001 0.011 0.012 0.887 0.001 0.002 0.030 67 A 0.004 0.002 0.023 0.012 0.001 0.015 0.008 0.001 0.001 0.001 0.005 0.020 0.893 0.012 0.003 0.003 68 E 0.006 0.173 0.038 0.031 0.001 0.011 0.002 0.004 0.001 0.001 0.007 0.012 0.667 0.001 0.020 0.026 69 M 0.011 0.052 0.097 0.351 0.001 0.008 0.020 0.001 0.013 0.002 0.002 0.005 0.138 0.006 0.002 0.293 70 I 0.016 0.001 0.908 0.052 0.001 0.002 0.003 0.001 0.001 0.001 0.001 0.001 0.013 0.001 0.003 0.002 71 E 0.004 0.013 0.355 0.481 0.045 0.056 0.005 0.003 0.001 0.001 0.002 0.002 0.019 0.009 0.001 0.005 72 V 0.004 0.036 0.009 0.824 0.056 0.029 0.004 0.016 0.001 0.001 0.006 0.002 0.007 0.003 0.001 0.001 73 E 0.002 0.050 0.021 0.443 0.123 0.213 0.017 0.060 0.009 0.008 0.018 0.009 0.018 0.003 0.003 0.003