# TARGET T0492 # Using neural net dunbrack-40pc-3157-t2k-IDGaaH13-3-13-7-13-9-13-11-n_sep-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 20 (1 n_sep ) # The input amino acid frequencies were determined from # alignment T0492.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 38.1747 # Pos AA G H I J K L M N P Q R S T U V W A B C D 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.014 0.009 0.013 0.001 0.003 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.066 0.005 0.068 0.814 2 F 0.019 0.010 0.009 0.010 0.047 0.041 0.039 0.009 0.001 0.001 0.001 0.001 0.002 0.001 0.004 0.002 0.537 0.005 0.070 0.193 3 S 0.008 0.008 0.002 0.001 0.003 0.011 0.005 0.001 0.004 0.003 0.004 0.001 0.001 0.001 0.001 0.002 0.056 0.003 0.196 0.692 4 L 0.015 0.007 0.002 0.001 0.001 0.001 0.001 0.002 0.005 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.620 0.005 0.035 0.298 5 R 0.010 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.001 0.001 0.051 0.003 0.647 0.275 6 D 0.638 0.005 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.016 0.042 0.107 0.181 7 A 0.614 0.163 0.006 0.005 0.001 0.001 0.001 0.001 0.004 0.005 0.001 0.001 0.003 0.001 0.001 0.001 0.036 0.011 0.020 0.126 8 K 0.032 0.080 0.009 0.001 0.002 0.002 0.001 0.001 0.010 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.137 0.007 0.350 0.363 9 C 0.035 0.041 0.010 0.001 0.002 0.002 0.001 0.001 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.071 0.012 0.092 0.721 10 G 0.243 0.041 0.012 0.004 0.001 0.002 0.005 0.002 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.148 0.030 0.078 0.427 11 Q 0.263 0.018 0.033 0.002 0.001 0.001 0.004 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.244 0.017 0.173 0.243 12 T 0.085 0.016 0.005 0.001 0.002 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.404 0.005 0.069 0.407 13 V 0.018 0.006 0.005 0.002 0.005 0.002 0.004 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.857 0.004 0.013 0.081 14 K 0.005 0.001 0.001 0.001 0.002 0.002 0.007 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.941 0.001 0.015 0.022 15 V 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.004 0.670 0.001 0.028 0.284 16 V 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.013 0.020 0.003 0.938 0.001 0.003 0.014 17 K 0.003 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.010 0.004 0.038 0.032 0.014 0.013 0.390 0.002 0.080 0.407 18 L 0.004 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.005 0.008 0.002 0.016 0.006 0.001 0.002 0.728 0.002 0.030 0.188 19 H 0.005 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.024 0.041 0.011 0.002 0.002 0.001 0.001 0.001 0.273 0.003 0.205 0.425 20 G 0.035 0.006 0.002 0.001 0.001 0.001 0.001 0.001 0.013 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.078 0.009 0.137 0.715 21 T 0.030 0.017 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.047 0.013 0.262 0.623 22 G 0.078 0.019 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.008 0.034 0.107 0.743 23 A 0.074 0.068 0.011 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.008 0.012 0.297 0.526 24 L 0.039 0.177 0.010 0.001 0.008 0.005 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.026 0.007 0.240 0.484 25 K 0.027 0.635 0.003 0.001 0.007 0.019 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.030 0.005 0.061 0.206 26 R 0.012 0.827 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.012 0.002 0.022 0.121 27 R 0.007 0.922 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.002 0.015 0.049 28 I 0.009 0.964 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.002 0.002 0.018 29 M 0.006 0.979 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.005 0.006 30 D 0.028 0.931 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.021 0.001 0.012 31 M 0.142 0.697 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.138 0.001 0.017 32 G 0.631 0.063 0.025 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.003 0.002 0.001 0.014 0.217 0.003 0.038 33 I 0.005 0.004 0.927 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.002 0.008 0.045 34 T 0.008 0.022 0.014 0.010 0.001 0.002 0.001 0.001 0.027 0.017 0.009 0.001 0.002 0.001 0.001 0.001 0.142 0.004 0.213 0.527 35 R 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.023 0.001 0.030 0.935 36 G 0.024 0.005 0.002 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.217 0.007 0.301 0.436 37 C 0.559 0.002 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.128 0.033 0.093 0.175 38 E 0.099 0.019 0.003 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.253 0.003 0.135 0.484 39 I 0.008 0.003 0.005 0.001 0.027 0.004 0.003 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.780 0.002 0.040 0.123 40 Y 0.004 0.002 0.001 0.001 0.007 0.013 0.012 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.845 0.001 0.025 0.079 41 I 0.002 0.004 0.001 0.001 0.002 0.002 0.003 0.002 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.002 0.693 0.001 0.042 0.241 42 R 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.005 0.012 0.038 0.005 0.865 0.001 0.012 0.054 43 K 0.004 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.004 0.007 0.031 0.022 0.010 0.580 0.002 0.054 0.278 44 V 0.011 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.003 0.023 0.003 0.066 0.027 0.003 0.004 0.486 0.007 0.046 0.311 45 A 0.013 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.067 0.009 0.004 0.005 0.005 0.010 0.002 0.397 0.006 0.117 0.351 46 P 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.998 47 L 0.018 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.008 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.138 0.007 0.111 0.705 48 G 0.181 0.006 0.002 0.002 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.067 0.033 0.055 0.647 49 D 0.249 0.004 0.009 0.001 0.003 0.001 0.002 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.063 0.012 0.220 0.433 50 P 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.001 0.005 0.989 51 I 0.010 0.001 0.001 0.001 0.050 0.086 0.038 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.563 0.002 0.086 0.152 52 Q 0.036 0.001 0.001 0.001 0.003 0.007 0.026 0.016 0.001 0.001 0.001 0.001 0.002 0.008 0.002 0.003 0.349 0.003 0.153 0.387 53 I 0.004 0.003 0.001 0.001 0.002 0.001 0.002 0.005 0.001 0.001 0.002 0.001 0.059 0.032 0.006 0.002 0.750 0.001 0.023 0.105 54 N 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.003 0.002 0.008 0.002 0.001 0.001 0.806 0.001 0.041 0.122 55 V 0.003 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.198 0.017 0.005 0.001 0.001 0.001 0.001 0.001 0.540 0.001 0.032 0.195 56 R 0.004 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.016 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.584 0.002 0.126 0.261 57 G 0.011 0.006 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.128 0.011 0.185 0.655 58 Y 0.235 0.007 0.015 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.106 0.051 0.178 0.408 59 E 0.048 0.026 0.007 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.285 0.006 0.247 0.375 60 L 0.037 0.061 0.011 0.002 0.139 0.023 0.028 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.318 0.006 0.098 0.269 61 S 0.025 0.160 0.002 0.001 0.010 0.056 0.026 0.013 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.307 0.005 0.082 0.309 62 L 0.043 0.198 0.005 0.001 0.001 0.003 0.005 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.372 0.013 0.051 0.299 63 R 0.060 0.259 0.004 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.184 0.016 0.078 0.391 64 K 0.046 0.206 0.008 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.112 0.016 0.056 0.550 65 S 0.041 0.146 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.026 0.010 0.115 0.656 66 A 0.104 0.289 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.027 0.015 0.130 0.428 67 A 0.170 0.605 0.013 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.030 0.012 0.022 0.145 68 E 0.122 0.534 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.162 0.011 0.032 0.132 69 M 0.176 0.348 0.017 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.152 0.023 0.014 0.265 70 I 0.140 0.202 0.013 0.002 0.001 0.001 0.004 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.483 0.028 0.009 0.111 71 E 0.058 0.057 0.008 0.001 0.001 0.001 0.003 0.002 0.001 0.001 0.001 0.001 0.001 0.003 0.003 0.002 0.651 0.013 0.028 0.169 72 V 0.011 0.035 0.025 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.018 0.017 0.015 0.007 0.562 0.007 0.020 0.273 73 E 0.004 0.011 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.003 0.002 0.010 0.007 0.004 0.002 0.731 0.003 0.037 0.177