# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	4.06e-11		
2gcxA	75	2.37e-10		
1fx7A	230	0.000338	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
1bi0	226	0.004958		
2dtr	226	0.007290		
2qq9A	226	0.01444		
2dtrA	226	0.03006	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1qw1A	121	0.05149		
1va0A	239	2.981	c.90.1.1	119899
1bymA	97	5.733	b.34.1.2	24458
1pjzA	203	8.050	c.66.1.36	94794
2c81A	418	10.81		
1cbfA	285	11.74	c.90.1.1	35587
1q2kA	31	17.65	g.3.7.2	95630
1r9cA	139	18.97	d.32.1.2	97255
1o69A	394	19.42	c.67.1.4	92560
2b4uA	335	27.68		
3bn1A	373	28.27		
1e0cA	271	30.31	c.46.1.2,c.46.1.2	32717,32718
1pjqA	457	30.63	c.2.1.11,c.90.1.1,e.37.1.1	94766,94767,94768
2qh8A	302	32.59		
2qwvA	208	33.32		
1eejA	216	33.67	c.47.1.9,d.17.3.1	33057,38071
1gjjA	168	34.72	a.140.1.1,a.140.1.1	83291,83292
1b9hA	388	37.48	c.67.1.4	34488
1jeiA	53	38.88	a.140.1.1	62918
1r1gA	31	40.56	g.3.7.2	96816
1y8xB	98	43.63		
1opd	85	43.64		
1cj3A	392	49.40	c.3.1.2,d.16.1.2	30347,37878
2ooiA	162	50.27		
1mdoA	393	50.93	c.67.1.4	79013
1pch	88	51.00		
1xw3A	110	52.03		
1v95A	130	52.32	c.51.1.1	108435
1wmjA	130	52.95		
1fwkA	296	53.93	d.14.1.5,d.58.26.1	37576,39398
2ogeA	399	55.47		
1vekA	84	56.61	a.5.2.1	113636
1z3eB	73	60.55	a.60.3.1	124401
1wohA	305	62.34	c.42.1.1	109446
1eziA	228	62.89	c.68.1.13	34512
1wc2A	181	63.49		
1rhsA	296	64.52	c.46.1.2,c.46.1.2	32703,32704
1v2yA	105	64.62	d.15.1.1	100275
1pchA	88	65.46	d.94.1.1	40564
2i1uA	121	67.06		
2ikkA	173	69.70		
2j0nA	200	71.43	a.250.1.1	137899
1a7aA	432	72.16	c.2.1.4,c.23.12.3	30104,31364
1x8mA	288	74.26	b.82.1.13	109516
1opdA	85	74.73	d.94.1.1	40560
1xdnA	277	74.92	d.142.2.4	115168
1m6nA	802	76.68	a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19	78697,78698,78699,78700
1ve2A	235	76.70	c.90.1.1	120008
1lbqA	362	77.43	c.92.1.1	77877
2ebiA	86	77.87		
2f4lA	297	78.38	b.23.3.1	132927
2oggA	152	78.45		
2nygA	273	79.45		
1tzjA	338	80.97	c.79.1.1	112868
1t3bA	211	81.39	c.47.1.9,d.17.3.1	106341,106342
3bhdA	234	84.75		
2jmwA	86	85.13		
2vm1A	118	87.51		
2d1hA	109	87.63	a.4.5.50	131125
8atcA	310	88.13	c.78.1.1,c.78.1.1	35132,35133
1h9fA	57	89.39	a.140.1.1	60826