# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	6.87e-10		
2gcxA	75	3.54e-09		
1fx7A	230	0.000894	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2dtr	226	0.001138		
1bi0	226	0.02041		
2dtrA	226	0.04427	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
2qq9A	226	0.05173		
1qw1A	121	0.1934		
1bymA	97	1.441	b.34.1.2	24458
1va0A	239	5.543	c.90.1.1	119899
1pjzA	203	10.24	c.66.1.36	94794
2c81A	418	18.53		
1cbfA	285	19.72	c.90.1.1	35587
1r9cA	139	20.46	d.32.1.2	97255
1e0cA	271	21.07	c.46.1.2,c.46.1.2	32717,32718
3bn1A	373	24.09		
1eejA	216	25.13	c.47.1.9,d.17.3.1	33057,38071
1h9fA	57	26.41	a.140.1.1	60826
1o69A	394	26.87	c.67.1.4	92560
2b4uA	335	27.33		
2qwvA	208	35.78		
1jeiA	53	37.74	a.140.1.1	62918
1opd	85	40.60		
1m6nA	802	42.15	a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19	78697,78698,78699,78700
1b9hA	388	42.70	c.67.1.4	34488
1pjqA	457	43.60	c.2.1.11,c.90.1.1,e.37.1.1	94766,94767,94768
1r1gA	31	44.39	g.3.7.2	96816
2ogeA	399	45.20		
1y8xB	98	45.83		
1wmjA	130	46.05		
1xw3A	110	46.57		
1q2kA	31	47.70	g.3.7.2	95630
1mdoA	393	58.93	c.67.1.4	79013
1pch	88	59.17		
2j0nA	200	59.79	a.250.1.1	137899
1vekA	84	64.07	a.5.2.1	113636
1wohA	305	64.74	c.42.1.1	109446
1opdA	85	65.72	d.94.1.1	40560
2ooiA	162	67.81		
1v2yA	105	68.54	d.15.1.1	100275
1pchA	88	68.98	d.94.1.1	40564
1rhsA	296	69.45	c.46.1.2,c.46.1.2	32703,32704
1x8mA	288	69.59	b.82.1.13	109516
1v95A	130	69.73	c.51.1.1	108435
2qmmA	197	69.81		
2vluA	122	74.90		
2ggtA	164	75.16	c.47.1.10	135156
1nkrA	201	75.74	b.1.1.4,b.1.1.4	21799,21800
8atcA	310	76.10	c.78.1.1,c.78.1.1	35132,35133
1yfbA	59	77.05	b.129.1.3	123057
1ve2A	235	77.48	c.90.1.1	120008
2ikkA	173	78.26		
1ptfA	88	79.93	d.94.1.1	40549
1xdnA	277	80.21	d.142.2.4	115168
1o6aA	96	80.52	b.139.1.1	92562
1d1gA	168	82.71	c.71.1.1	34889
2bwjA	199	86.83		
1ptf	88	88.80		
1z0rA	53	89.27	b.129.1.3	124326