# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 1.44e-11 2gcxA 75 2.80e-11 1fx7A 230 4.57e-05 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1bi0 226 0.000792 1qw1A 121 0.004534 2dtr 226 0.01014 2dtrA 226 0.03293 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2qq9A 226 0.07539 1bymA 97 0.2137 b.34.1.2 24458 1pjzA 203 1.224 c.66.1.36 94794 2c81A 418 2.497 3bn1A 373 3.296 1o69A 394 4.193 c.67.1.4 92560 1h9fA 57 4.955 a.140.1.1 60826 1jeiA 53 5.806 a.140.1.1 62918 1b9hA 388 6.771 c.67.1.4 34488 2ogeA 399 7.086 1opd 85 7.905 1y8xB 98 9.182 1va0A 239 9.390 c.90.1.1 119899 1opdA 85 11.95 d.94.1.1 40560 1mdoA 393 12.71 c.67.1.4 79013 1pch 88 12.87 1pchA 88 14.89 d.94.1.1 40564 1ptf 88 15.41 1ptfA 88 15.93 d.94.1.1 40549 2nygA 273 18.59 1lb2B 84 18.71 a.60.3.1 77871 1lkkA 105 21.19 d.93.1.1 40412 1v2yA 105 21.44 d.15.1.1 100275 1gutA 68 21.45 b.40.6.1 65576 1fr3A 67 21.86 b.40.6.1 25436 1o6aA 96 24.70 b.139.1.1 92562 1vekA 84 25.53 a.5.2.1 113636 1el6A 219 26.01 d.182.1.1 42606 2b4uA 335 26.30 3bhdA 234 27.47 2qh8A 302 28.98 1q2kA 31 29.76 g.3.7.2 95630 1v95A 130 29.92 c.51.1.1 108435 2oq1A 254 32.53 d.93.1.1,d.93.1.1 139220,139221 1qfrA 89 33.26 d.94.1.1 40552 2vm1A 118 34.81 1sphA 88 35.33 d.94.1.1 40544 1a1aA 107 36.41 d.93.1.1 40449 1zc1A 208 36.44 1e0cA 271 36.46 c.46.1.2,c.46.1.2 32717,32718 1eejA 216 36.59 c.47.1.9,d.17.3.1 33057,38071 1wmjA 130 37.97 2ooiA 162 38.63 1t3bA 211 39.18 c.47.1.9,d.17.3.1 106341,106342 1h9mA 145 39.77 b.40.6.2,b.40.6.2 60833,60834 1ub4C 85 39.78 b.129.1.1 88401 2hdeA 148 41.69 1cj3A 392 42.78 c.3.1.2,d.16.1.2 30347,37878 2vluA 122 42.85 2pz0A 252 44.01 1nrvA 105 44.42 d.93.1.1 86126 2glwA 92 46.04 3cq9A 227 46.74 1wc2A 181 47.07 1vg5A 73 47.63 a.5.2.1 113640 2hmvA 144 48.33 c.2.1.9 136615 1cexA 214 49.97 c.69.1.30 31285 2p19A 149 52.00 2ebiA 86 52.00 1ktbA 405 52.73 b.71.1.1,c.1.8.1 72960,72961 3cnvA 162 53.29 1iugA 352 53.44 c.67.1.3 90699 1tzjA 338 53.79 c.79.1.1 112868 1w18A 493 53.93 1e19A 314 54.20 c.73.1.1 34967 1z3eB 73 54.73 a.60.3.1 124401 2ikkA 173 56.11 2bwfA 77 57.00 d.15.1.1 129363 2nvgA 141 57.38 2ywwA 149 58.21 1r9cA 139 58.85 d.32.1.2 97255 3bkhA 268 59.40 1h9jA 145 59.50 b.40.6.2,b.40.6.2 60829,60830 2f4lA 297 60.39 b.23.3.1 132927 2qwvA 208 60.98 1z02A 446 61.07 2nwfA 141 61.55 1pgyA 47 61.81 a.5.2.1 94696 1rhsA 296 62.05 c.46.1.2,c.46.1.2 32703,32704 1ep8A 112 63.11 c.47.1.1 64907 2as0A 396 63.38 b.122.1.9,c.66.1.51 127227,127228 1nkrA 201 64.63 b.1.1.4,b.1.1.4 21799,21800 1e9eA 215 66.13 c.37.1.1 64810 1z0rA 53 66.34 b.129.1.3 124326 8atcA 310 66.63 c.78.1.1,c.78.1.1 35132,35133 1is3A 135 67.87 b.29.1.3 76773 2j0nA 200 67.87 a.250.1.1 137899 1eikA 77 68.17 d.78.1.1 39751 1bt0A 76 68.33 d.15.1.1 37607 1r1gA 31 69.40 g.3.7.2 96816 1pswA 348 69.62 c.87.1.7 88287 2c2xA 281 70.14 1kxrA 339 71.68 d.3.1.3 73175 3bkxA 275 71.78 2axjA 242 73.15 1tl9A 339 73.27 d.3.1.3 112505 1xw3A 110 73.83 1fwkA 296 75.10 d.14.1.5,d.58.26.1 37576,39398 1pjqA 457 76.14 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 1k0wA 231 76.25 c.74.1.1 77220 1z2mA 155 78.73 d.15.1.1,d.15.1.1 124387,124388 1sltA 134 78.87 b.29.1.3 24186 1x8mA 288 80.27 b.82.1.13 109516 2jmwA 86 81.19 1h9sA 140 81.44 b.40.6.2,b.40.6.2 60843,60844 1y4iA 398 83.30 c.67.1.3 122619 2aznA 219 85.22 c.71.1.2 127608 2jfgA 445 85.59 c.5.1.1,c.59.1.1,c.72.2.1 138306,138307,138308 1kpgA 287 87.00 c.66.1.18 68735 1qcsA 211 87.63 b.52.2.3,d.31.1.1 26927,38461