# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	1.34e-10		
2gcxA	75	5.47e-10		
1fx7A	230	0.000424	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2dtr	226	0.004102		
2qq9A	226	0.01491		
1bi0	226	0.01792		
2dtrA	226	0.03175	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1qw1A	121	0.0995		
1va0A	239	4.989	c.90.1.1	119899
1bymA	97	5.441	b.34.1.2	24458
1pjzA	203	5.534	c.66.1.36	94794
2c81A	418	9.833		
3bn1A	373	17.35		
1o69A	394	17.95	c.67.1.4	92560
2b4uA	335	22.47		
1eejA	216	27.86	c.47.1.9,d.17.3.1	33057,38071
1r9cA	139	27.87	d.32.1.2	97255
1q2kA	31	34.92	g.3.7.2	95630
1mdoA	393	36.76	c.67.1.4	79013
2ogeA	399	38.60		
1b9hA	388	39.52	c.67.1.4	34488
1jeiA	53	40.38	a.140.1.1	62918
1gjjA	168	43.57	a.140.1.1,a.140.1.1	83291,83292
1h9fA	57	43.66	a.140.1.1	60826
1zylA	328	48.03		
2bwjA	199	48.23		
1cj3A	392	49.19	c.3.1.2,d.16.1.2	30347,37878
1gutA	68	54.53	b.40.6.1	65576
1opd	85	56.72		
1pch	88	57.09		
1wc2A	181	57.19		
3bhdA	234	57.21		
1m6nA	802	57.30	a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19	78697,78698,78699,78700
1y8xB	98	60.72		
1pchA	88	61.74	d.94.1.1	40564
1e0cA	271	62.86	c.46.1.2,c.46.1.2	32717,32718
1a7aA	432	62.86	c.2.1.4,c.23.12.3	30104,31364
1v95A	130	65.98	c.51.1.1	108435
1pjqA	457	66.25	c.2.1.11,c.90.1.1,e.37.1.1	94766,94767,94768
1xw3A	110	66.68		
1opdA	85	66.70	d.94.1.1	40560
1fwkA	296	68.62	d.14.1.5,d.58.26.1	37576,39398
1wmjA	130	73.44		
2i1uA	121	77.79		
1z3eB	73	80.14	a.60.3.1	124401
2ggtA	164	80.22	c.47.1.10	135156
2qwvA	208	83.80		
2rccA	346	84.43		
2qedA	258	86.14		
2ooiA	162	86.15		
1t3bA	211	88.39	c.47.1.9,d.17.3.1	106341,106342
1im8A	244	88.93	c.66.1.14	66212