# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	2.33e-10		
2gcxA	75	1.06e-09		
1fx7A	230	0.000708	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2dtr	226	0.004952		
2qq9A	226	0.01715		
1bi0	226	0.02426		
2dtrA	226	0.04036	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1qw1A	121	0.1881		
1pjzA	203	6.285	c.66.1.36	94794
1va0A	239	7.059	c.90.1.1	119899
2c81A	418	9.943		
1bymA	97	12.00	b.34.1.2	24458
3bn1A	373	19.84		
1o69A	394	21.29	c.67.1.4	92560
1r9cA	139	28.16	d.32.1.2	97255
1mdoA	393	32.33	c.67.1.4	79013
1q2kA	31	32.83	g.3.7.2	95630
2ogeA	399	40.71		
1b9hA	388	40.95	c.67.1.4	34488
1gjjA	168	41.16	a.140.1.1,a.140.1.1	83291,83292
1jeiA	53	41.91	a.140.1.1	62918
2b4uA	335	41.99		
1h9fA	57	43.78	a.140.1.1	60826
2i1uA	121	49.64		
1wc2A	181	54.07		
1a7aA	432	55.45	c.2.1.4,c.23.12.3	30104,31364
1m6nA	802	56.86	a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19	78697,78698,78699,78700
2bwjA	199	57.16		
1eejA	216	57.89	c.47.1.9,d.17.3.1	33057,38071
1wmjA	130	59.94		
1v95A	130	60.17	c.51.1.1	108435
1pch	88	60.29		
1y8xB	98	61.28		
1xw3A	110	62.32		
1zylA	328	62.98		
1opd	85	63.71		
2vm1A	118	63.76		
1e0cA	271	64.16	c.46.1.2,c.46.1.2	32717,32718
2vluA	122	64.88		
3bhdA	234	65.30		
1vekA	84	65.36	a.5.2.1	113636
1pchA	88	67.26	d.94.1.1	40564
1gutA	68	68.21	b.40.6.1	65576
1fwkA	296	69.08	d.14.1.5,d.58.26.1	37576,39398
1thx	115	72.06		
2ggtA	164	73.67	c.47.1.10	135156
2pptA	155	74.21		
1opdA	85	77.28	d.94.1.1	40560
1pjqA	457	78.20	c.2.1.11,c.90.1.1,e.37.1.1	94766,94767,94768
1z3eB	73	78.54	a.60.3.1	124401
1lbqA	362	78.55	c.92.1.1	77877
2qwvA	208	80.35		
1pswA	348	80.40	c.87.1.7	88287
1thxA	115	80.52	c.47.1.1	32732
1w4vA	119	80.82		
1tzjA	338	85.19	c.79.1.1	112868
1lb2B	84	85.64	a.60.3.1	77871
1im8A	244	87.83	c.66.1.14	66212
2ooiA	162	89.11		
2dsjA	423	89.15