# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	3.59e-10		
2gcxA	75	1.20e-09		
1fx7A	230	0.000796	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2dtr	226	0.003201		
2qq9A	226	0.01075		
1bi0	226	0.02007		
2dtrA	226	0.03652	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1qw1A	121	0.1193		
1va0A	239	5.655	c.90.1.1	119899
1pjzA	203	5.702	c.66.1.36	94794
1bymA	97	7.401	b.34.1.2	24458
2c81A	418	14.45		
3bn1A	373	25.42		
1o69A	394	25.65	c.67.1.4	92560
1r9cA	139	30.82	d.32.1.2	97255
1jeiA	53	31.96	a.140.1.1	62918
1h9fA	57	35.32	a.140.1.1	60826
1q2kA	31	35.88	g.3.7.2	95630
1mdoA	393	40.62	c.67.1.4	79013
1gjjA	168	43.15	a.140.1.1,a.140.1.1	83291,83292
2ogeA	399	45.67		
1pch	88	48.67		
1y8xB	98	51.44		
1opd	85	51.73		
2b4uA	335	52.84		
2bwjA	199	53.06		
2qwvA	208	53.52		
1b9hA	388	54.00	c.67.1.4	34488
1wc2A	181	55.10		
1pchA	88	55.69	d.94.1.1	40564
1e0cA	271	56.92	c.46.1.2,c.46.1.2	32717,32718
1a7aA	432	57.88	c.2.1.4,c.23.12.3	30104,31364
1v95A	130	58.61	c.51.1.1	108435
1cj3A	392	61.24	c.3.1.2,d.16.1.2	30347,37878
1wmjA	130	61.26		
1opdA	85	62.77	d.94.1.1	40560
1m6nA	802	70.43	a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19	78697,78698,78699,78700
1gutA	68	71.85	b.40.6.1	65576
2i1uA	121	72.06		
1zylA	328	72.77		
1eejA	216	74.49	c.47.1.9,d.17.3.1	33057,38071
1pjqA	457	78.24	c.2.1.11,c.90.1.1,e.37.1.1	94766,94767,94768
1vekA	84	78.48	a.5.2.1	113636
1lbqA	362	80.44	c.92.1.1	77877
2dsjA	423	80.93		
2vluA	122	82.35		
1nvmB	312	83.04	c.2.1.3,d.81.1.1	86251,86252
2ooiA	162	86.08		
3bhdA	234	87.79		
2vm1A	118	89.38		
2dc4A	165	89.95