# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	2.58e-09		
2gcxA	75	5.05e-09		
1fx7A	230	0.02584	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
1bi0	226	0.02592		
1qw1A	121	0.1136		
2dtrA	226	0.3899	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
2dtr	226	0.5761		
2qq9A	226	1.370		
1pjzA	203	4.345	c.66.1.36	94794
1bymA	97	4.383	b.34.1.2	24458
1va0A	239	15.43	c.90.1.1	119899
1e0cA	271	17.03	c.46.1.2,c.46.1.2	32717,32718
1vekA	84	18.42	a.5.2.1	113636
1jeiA	53	22.62	a.140.1.1	62918
1h9fA	57	33.28	a.140.1.1	60826
1pch	88	36.10		
1rhsA	296	37.05	c.46.1.2,c.46.1.2	32703,32704
1z3eB	73	37.68	a.60.3.1	124401
1opd	85	39.35		
1cbfA	285	39.72	c.90.1.1	35587
1eejA	216	42.55	c.47.1.9,d.17.3.1	33057,38071
1pchA	88	44.09	d.94.1.1	40564
1ptf	88	50.58		
1ptfA	88	50.93	d.94.1.1	40549
3bhdA	234	52.87		
1shfA	59	54.00	b.34.2.1	24462
1lb2B	84	57.47	a.60.3.1	77871
1vg5A	73	61.01	a.5.2.1	113640
1y8xB	98	62.02		
1opdA	85	63.43	d.94.1.1	40560
1avzC	57	64.74	b.34.2.1	24467
1fr3A	67	66.84	b.40.6.1	25436
1ktbA	405	67.39	b.71.1.1,c.1.8.1	72960,72961
1zylA	328	68.96		
1ri5A	298	70.47	c.66.1.34	97502
1pgyA	47	74.97	a.5.2.1	94696
1a0nB	69	75.29	b.34.2.1	24469
2c81A	418	76.40		
1dkqA	410	82.12	c.60.1.2	33998
3bpdA	100	82.20		
1d2zB	153	84.42	a.77.1.2	18439
1t3bA	211	86.31	c.47.1.9,d.17.3.1	106341,106342
1rhs	296	86.86		
1q0uA	219	87.88	c.37.1.19	95512
2vm1A	118	89.08