# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	4.29e-10		
2gcxA	75	2.45e-09		
1fx7A	230	0.000740	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2dtr	226	0.005784		
1bi0	226	0.02353		
2qq9A	226	0.02383		
2dtrA	226	0.05040	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1qw1A	121	0.1718		
1va0A	239	4.727	c.90.1.1	119899
1bymA	97	9.392	b.34.1.2	24458
1pjzA	203	10.53	c.66.1.36	94794
1cbfA	285	11.99	c.90.1.1	35587
2c81A	418	16.23		
1o69A	394	18.85	c.67.1.4	92560
1b9hA	388	19.01	c.67.1.4	34488
1eejA	216	23.67	c.47.1.9,d.17.3.1	33057,38071
2b4uA	335	27.72		
3bn1A	373	29.97		
1q2kA	31	31.92	g.3.7.2	95630
1r9cA	139	33.10	d.32.1.2	97255
2ogeA	399	36.00		
1gjjA	168	42.55	a.140.1.1,a.140.1.1	83291,83292
1fwkA	296	44.92	d.14.1.5,d.58.26.1	37576,39398
1h9fA	57	45.87	a.140.1.1	60826
1xw3A	110	47.86		
1vekA	84	49.56	a.5.2.1	113636
2vluA	122	53.21		
1rhsA	296	54.71	c.46.1.2,c.46.1.2	32703,32704
1mdoA	393	54.85	c.67.1.4	79013
1jeiA	53	55.48	a.140.1.1	62918
1lb2B	84	57.95	a.60.3.1	77871
1pswA	348	60.18	c.87.1.7	88287
2ooiA	162	61.28		
3csuA	310	63.03	c.78.1.1,c.78.1.1	35094,35095
1v95A	130	64.23	c.51.1.1	108435
2dsjA	423	65.89		
1opd	85	68.71		
2qwvA	208	69.40		
1cj3A	392	69.55	c.3.1.2,d.16.1.2	30347,37878
1pjqA	457	69.66	c.2.1.11,c.90.1.1,e.37.1.1	94766,94767,94768
1qmgA	524	71.78	a.100.1.2,c.2.1.6	18785,30182
8atcA	310	71.94	c.78.1.1,c.78.1.1	35132,35133
1z3eB	73	72.24	a.60.3.1	124401
2j0nA	200	72.25	a.250.1.1	137899
2vm1A	118	72.73		
2d1hA	109	77.73	a.4.5.50	131125
2i1uA	121	81.86		
1wohA	305	82.32	c.42.1.1	109446
1e0cA	271	82.61	c.46.1.2,c.46.1.2	32717,32718
1ekxA	311	82.87	c.78.1.1,c.78.1.1	35088,35089
1m6nA	802	83.80	a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19	78697,78698,78699,78700
1pch	88	88.57		
2pkeA	251	89.23		
1wmjA	130	89.83		
3bhdA	234	89.86