# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 3.34e-13 2gcxA 75 3.04e-12 1fx7A 230 7.93e-05 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2dtr 226 8.08e-05 2dtrA 226 0.01199 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1qw1A 121 0.02934 1bi0 226 0.02986 2qq9A 226 0.2134 1eejA 216 0.3617 c.47.1.9,d.17.3.1 33057,38071 1zy9A 564 2.476 b.30.5.11,c.1.8.13 125813,125814 1bymA 97 2.541 b.34.1.2 24458 1b9mA 265 3.966 a.4.5.8,b.40.6.2,b.40.6.2 16118,58938,58939 1zzmA 259 7.477 c.1.9.12 125911 1hg8A 349 9.352 b.80.1.3 65830 2qedA 258 10.55 2dsjA 423 11.23 2rebA 352 12.85 c.37.1.11,d.48.1.1 32282,38767 2raqA 97 13.84 1amoA 615 14.13 b.43.4.1,c.23.5.2,c.25.1.4 25669,31210,31557 1v73A 342 14.27 1u0tA 307 14.41 e.52.1.1 107567 1lbqA 362 15.12 c.92.1.1 77877 1va0A 239 15.65 c.90.1.1 119899 1r9cA 139 15.68 d.32.1.2 97255 2z8rA 591 15.72 1rhsA 296 16.17 c.46.1.2,c.46.1.2 32703,32704 2olnA 397 17.54 2qwvA 208 17.60 1zylA 328 17.86 2epgA 487 18.59 2qwxA 231 19.59 1a53 247 20.12 1csjA 531 22.34 e.8.1.4 43120 1fsuA 492 22.69 c.76.1.2 35032 2c1vA 338 26.56 2ywwA 149 26.57 1ddgA 374 26.76 b.43.4.1,c.25.1.4 25671,31559 2isnA 364 26.84 1bqg 451 28.82 2jmwA 86 29.03 1mpyA 307 30.54 d.32.1.3,d.32.1.3 38508,38509 1lycA 343 31.25 a.93.1.1 74344 2oajA 902 32.67 2fa1A 160 33.67 d.190.1.2 133182 2pkeA 251 34.05 2dc1A 236 34.18 2dnjA 260 34.20 d.151.1.1 41790 1wrbA 253 37.03 c.37.1.19 121192 2c9hA 444 37.31 1z9tA 255 37.63 2r8jA 554 37.69 2aaaA 484 38.54 b.71.1.1,c.1.8.1 27777,28764 1t1iA 364 38.56 c.41.1.2 106248 2q4zA 312 39.03 2ogeA 399 40.01 1ky9A 448 40.19 b.36.1.4,b.47.1.1 73198,73199 2o55A 258 41.14 1wc2A 181 41.52 1rhs 296 41.85 1qfmA 710 42.33 b.69.7.1,c.69.1.4 27673,34641 1wdeA 294 42.57 c.90.1.1 114534 1czaN 917 42.78 c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33463,33464,33465,33466 1jeiA 53 43.32 a.140.1.1 62918 1ub0A 258 43.97 c.72.1.2 88394 2zfdA 226 44.00 2i1uA 121 44.72 1plqA 258 45.09 d.131.1.2,d.131.1.2 41388,41389 1skz 119 45.27 1jroA 462 45.70 a.56.1.1,d.15.4.2,d.87.2.1,d.145.1.3 67137,67138,67139,67140 1dbyA 107 46.66 c.47.1.1 32734 2ooiA 162 46.66 1f46A 140 47.51 d.129.4.1 59643 1zkcA 197 47.54 b.62.1.1 125182 1cj3A 392 49.99 c.3.1.2,d.16.1.2 30347,37878 1d2mA 665 50.09 c.37.1.19,c.37.1.19 32417,32418 2fnjB 118 50.80 d.15.1.1 133819 1jb0A 755 54.40 f.29.1.1 62820 2jdxA 385 54.51 d.126.1.2 41139 1p57A 114 55.33 d.170.1.2 94125 2h88A 621 55.75 1h9fA 57 55.77 a.140.1.1 60826 2qtzA 539 56.31 2pgfA 371 56.72 2rk0A 136 58.58 1q2kA 31 59.60 g.3.7.2 95630 1fwkA 296 60.18 d.14.1.5,d.58.26.1 37576,39398 3bq5A 766 61.50 1z3eB 73 62.90 a.60.3.1 124401 2bdrA 175 64.51 b.82.1.14 128342 2f51A 118 68.82 1vekA 84 68.94 a.5.2.1 113636 3bhdA 234 68.97 2obiA 183 69.23 1rpa 342 69.25 2qjcA 262 69.52 1sqiA 393 69.55 d.32.1.3,d.32.1.3 105914,105915 1aukA 489 69.56 c.76.1.2 35030 1t9bA 677 69.72 c.31.1.3,c.36.1.5,c.36.1.9 112334,112335,112336 1ga1A 372 70.60 c.41.1.2 32557 1d2zB 153 70.84 a.77.1.2 18439 1nrzA 164 72.35 c.38.1.1 86131 1dypA 271 72.78 b.29.1.2 24185 1k9uA 78 73.05 a.39.1.10 84348 1sazA 381 73.32 c.55.1.2,c.55.1.2 118925,118926 1g5hA 454 74.56 c.51.1.1,d.104.1.1 60270,60271 1vid 221 74.81 2eeyA 162 75.95 1nswA 105 76.21 c.47.1.1 92097 3borA 237 76.62 1eziA 228 78.83 c.68.1.13 34512 1wmjA 130 79.78 1ri5A 298 80.23 c.66.1.34 97502 1w79A 489 80.41 e.3.1.3 120680 1jk0A 419 80.67 a.25.1.2 63142 1nkrA 201 81.03 b.1.1.4,b.1.1.4 21799,21800 2gmwA 211 81.61 1j77A 209 81.62 a.132.1.2 62674 2ikkA 173 81.64 1mvwC 147 82.41 i.15.1.1 79525 1efpB 252 82.83 c.26.2.3 31636 1ep8A 112 84.49 c.47.1.1 64907 1lf7A 182 84.65 b.60.1.1 73878 1x3lA 440 86.96 1iugA 352 87.40 c.67.1.3 90699 2qo3A 915 88.55 1lb2B 84 89.41 a.60.3.1 77871