# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	1.14e-10		
2gcxA	75	5.67e-10		
1fx7A	230	0.000519	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2dtr	226	0.003172		
1bi0	226	0.01480		
2qq9A	226	0.01648		
2dtrA	226	0.02527	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1qw1A	121	0.07850		
1va0A	239	3.889	c.90.1.1	119899
1bymA	97	5.562	b.34.1.2	24458
1pjzA	203	8.508	c.66.1.36	94794
1cbfA	285	14.16	c.90.1.1	35587
1r9cA	139	15.10	d.32.1.2	97255
2c81A	418	24.65		
1q2kA	31	27.94	g.3.7.2	95630
1h9fA	57	29.75	a.140.1.1	60826
1jeiA	53	30.83	a.140.1.1	62918
1o69A	394	31.26	c.67.1.4	92560
1gjjA	168	33.12	a.140.1.1,a.140.1.1	83291,83292
1eejA	216	34.60	c.47.1.9,d.17.3.1	33057,38071
1wc2A	181	35.01		
1b9hA	388	35.42	c.67.1.4	34488
2j0nA	200	39.76	a.250.1.1	137899
2b4uA	335	41.78		
3bn1A	373	44.66		
1vekA	84	45.91	a.5.2.1	113636
2vluA	122	47.13		
2qwvA	208	48.08		
1opd	85	48.43		
1pjqA	457	48.87	c.2.1.11,c.90.1.1,e.37.1.1	94766,94767,94768
2dc4A	165	49.87		
2ooiA	162	52.63		
1zylA	328	53.70		
2bwjA	199	58.09		
1m6nA	802	58.57	a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19	78697,78698,78699,78700
1e0cA	271	59.56	c.46.1.2,c.46.1.2	32717,32718
2vm1A	118	60.21		
1wmjA	130	60.59		
2ogeA	399	62.36		
2i1uA	121	62.97		
1opdA	85	67.84	d.94.1.1	40560
1v95A	130	68.64	c.51.1.1	108435
1lb2B	84	70.16	a.60.3.1	77871
1pswA	348	70.55	c.87.1.7	88287
3bhdA	234	71.52		
2pieA	138	74.06		
2fnjB	118	75.18	d.15.1.1	133819
1qmgA	524	76.73	a.100.1.2,c.2.1.6	18785,30182
1pch	88	78.08		
1mdoA	393	79.24	c.67.1.4	79013
1rhsA	296	81.59	c.46.1.2,c.46.1.2	32703,32704
1pchA	88	83.58	d.94.1.1	40564
1x8mA	288	83.80	b.82.1.13	109516
2dsjA	423	84.55		
3csuA	310	85.25	c.78.1.1,c.78.1.1	35094,35095
1z3eB	73	85.97	a.60.3.1	124401
2ebiA	86	86.59		
1fwkA	296	87.33	d.14.1.5,d.58.26.1	37576,39398
8atcA	310	87.39	c.78.1.1,c.78.1.1	35132,35133
2f51A	118	89.06