# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	8.07e-11		
2gcxA	75	3.43e-10		
1fx7A	230	0.000814	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2dtr	226	0.004119		
2qq9A	226	0.01841		
1bi0	226	0.02178		
2dtrA	226	0.04141	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1qw1A	121	0.1037		
1bymA	97	1.834	b.34.1.2	24458
1pjzA	203	5.443	c.66.1.36	94794
1va0A	239	9.116	c.90.1.1	119899
1h9fA	57	19.83	a.140.1.1	60826
2c81A	418	22.50		
1jeiA	53	23.72	a.140.1.1	62918
2dsjA	423	24.95		
1r9cA	139	33.12	d.32.1.2	97255
2b4uA	335	36.65		
3bn1A	373	40.23		
1r1gA	31	41.96	g.3.7.2	96816
1wmjA	130	42.64		
1o69A	394	43.92	c.67.1.4	92560
1q2kA	31	44.40	g.3.7.2	95630
1cj3A	392	45.15	c.3.1.2,d.16.1.2	30347,37878
1vekA	84	47.75	a.5.2.1	113636
1xw3A	110	47.86		
1wc2A	181	50.64		
1y8xB	98	52.79		
2j0nA	200	57.44	a.250.1.1	137899
1v95A	130	58.81	c.51.1.1	108435
2ggtA	164	64.97	c.47.1.10	135156
8atcA	310	66.19	c.78.1.1,c.78.1.1	35132,35133
1m6nA	802	67.24	a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19	78697,78698,78699,78700
1gjjA	168	69.43	a.140.1.1,a.140.1.1	83291,83292
1mdoA	393	69.47	c.67.1.4	79013
2vluA	122	72.81		
1lb2B	84	76.29	a.60.3.1	77871
1z3eB	73	77.75	a.60.3.1	124401
1eejA	216	78.18	c.47.1.9,d.17.3.1	33057,38071
2vm1A	118	78.58		
1wohA	305	79.04	c.42.1.1	109446
2bwjA	199	79.40		
1opd	85	79.67		
2ogeA	399	79.77		
1x8mA	288	81.11	b.82.1.13	109516
1lbqA	362	81.85	c.92.1.1	77877
1ekxA	311	83.32	c.78.1.1,c.78.1.1	35088,35089
2ooiA	162	87.74