# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	4.43e-10		
2gcxA	75	8.78e-10		
1fx7A	230	0.000698	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2dtr	226	0.01183		
1bi0	226	0.01796		
2qq9A	226	0.02144		
2dtrA	226	0.03207	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1qw1A	121	0.05202		
1bymA	97	3.308	b.34.1.2	24458
1pjzA	203	4.643	c.66.1.36	94794
1va0A	239	9.357	c.90.1.1	119899
2c81A	418	12.24		
1h9fA	57	16.15	a.140.1.1	60826
1vekA	84	19.00	a.5.2.1	113636
1r9cA	139	24.33	d.32.1.2	97255
1y8xB	98	24.57		
3bn1A	373	25.57		
2dsjA	423	28.44		
1jeiA	53	28.90	a.140.1.1	62918
1o69A	394	29.76	c.67.1.4	92560
1q2kA	31	30.91	g.3.7.2	95630
1b9hA	388	34.91	c.67.1.4	34488
1opd	85	36.95		
1pch	88	39.20		
1gjjA	168	39.47	a.140.1.1,a.140.1.1	83291,83292
1cj3A	392	42.28	c.3.1.2,d.16.1.2	30347,37878
1v95A	130	42.63	c.51.1.1	108435
1lb2B	84	44.27	a.60.3.1	77871
2ogeA	399	45.34		
1pchA	88	46.34	d.94.1.1	40564
1mdoA	393	48.15	c.67.1.4	79013
1r1gA	31	50.04	g.3.7.2	96816
1z3eB	73	53.28	a.60.3.1	124401
2j0nA	200	53.74	a.250.1.1	137899
1opdA	85	55.85	d.94.1.1	40560
1gutA	68	55.89	b.40.6.1	65576
1fwkA	296	56.99	d.14.1.5,d.58.26.1	37576,39398
1xw3A	110	60.20		
1ptfA	88	60.59	d.94.1.1	40549
1ptf	88	61.48		
2ggtA	164	63.05	c.47.1.10	135156
2b4uA	335	70.37		
2qh8A	302	73.71		
1pjqA	457	74.94	c.2.1.11,c.90.1.1,e.37.1.1	94766,94767,94768
2ebiA	86	77.61		
2hdeA	148	79.37		
1fr3A	67	79.71	b.40.6.1	25436
1x8mA	288	80.71	b.82.1.13	109516
8atcA	310	80.96	c.78.1.1,c.78.1.1	35132,35133
1wmjA	130	86.19		
1v2yA	105	87.84	d.15.1.1	100275