# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	1.03e-09		
2gcxA	75	2.79e-09		
1fx7A	230	0.001687	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2dtr	226	0.005061		
1bi0	226	0.02296		
2qq9A	226	0.04000		
2dtrA	226	0.04467	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1qw1A	121	0.08866		
1pjzA	203	4.925	c.66.1.36	94794
1bymA	97	8.020	b.34.1.2	24458
1va0A	239	9.148	c.90.1.1	119899
1y8xB	98	19.08		
2c81A	418	21.03		
1jeiA	53	22.10	a.140.1.1	62918
1h9fA	57	29.46	a.140.1.1	60826
1r9cA	139	30.29	d.32.1.2	97255
3bn1A	373	31.36		
1opd	85	33.16		
1o69A	394	33.81	c.67.1.4	92560
1q2kA	31	43.74	g.3.7.2	95630
1pch	88	44.68		
1r1gA	31	47.97	g.3.7.2	96816
1xw3A	110	50.11		
1zylA	328	50.32		
1e0cA	271	50.76	c.46.1.2,c.46.1.2	32717,32718
1wc2A	181	50.77		
1pchA	88	50.87	d.94.1.1	40564
1opdA	85	51.95	d.94.1.1	40560
2qwvA	208	53.18		
1b9hA	388	54.47	c.67.1.4	34488
2b4uA	335	57.07		
2ggtA	164	58.01	c.47.1.10	135156
2dc4A	165	58.94		
1v95A	130	66.48	c.51.1.1	108435
1gjjA	168	66.54	a.140.1.1,a.140.1.1	83291,83292
1vekA	84	68.47	a.5.2.1	113636
2ogeA	399	68.82		
2vm1A	118	69.20		
2j0nA	200	69.58	a.250.1.1	137899
1ptfA	88	70.54	d.94.1.1	40549
2vluA	122	71.21		
1ptf	88	71.47		
1cbfA	285	72.49	c.90.1.1	35587
2hdeA	148	72.56		
8atcA	310	74.76	c.78.1.1,c.78.1.1	35132,35133
1v2yA	105	76.62	d.15.1.1	100275
1mdoA	393	77.10	c.67.1.4	79013
1pjqA	457	77.58	c.2.1.11,c.90.1.1,e.37.1.1	94766,94767,94768
1eziA	228	79.91	c.68.1.13	34512
1z3eB	73	80.27	a.60.3.1	124401
2nygA	273	82.67		
1lbqA	362	82.94	c.92.1.1	77877
1nkrA	201	83.15	b.1.1.4,b.1.1.4	21799,21800
1gutA	68	84.10	b.40.6.1	65576
2dsjA	423	84.97		
1cj3A	392	85.70	c.3.1.2,d.16.1.2	30347,37878
1wmjA	130	87.04		
1yfbA	59	88.23	b.129.1.3	123057