# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	1.61e-08		
2gcxA	75	4.89e-08		
2dtr	226	0.07779		
2dtrA	226	0.1454	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1bi0	226	0.1464		
2qq9A	226	0.2779		
1fx7A	230	0.3664	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
1qw1A	121	1.119		
1ri5A	298	18.04	c.66.1.34	97502
1bymA	97	27.69	b.34.1.2	24458
1h9fA	57	46.14	a.140.1.1	60826
2v9cA	215	47.08		
1va0A	239	47.99	c.90.1.1	119899
1jeiA	53	52.21	a.140.1.1	62918
1zx0A	236	70.20	c.66.1.16	125757
2affA	120	80.87	b.26.1.2	126678
1pjzA	203	86.65	c.66.1.36	94794