# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	2.37e-09		
2gcxA	75	5.04e-09		
2dtr	226	0.006872		
1fx7A	230	0.01065	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2dtrA	226	0.03945	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1bi0	226	0.03958		
1qw1A	121	0.1160		
2qq9A	226	0.2307		
1pjzA	203	12.18	c.66.1.36	94794
1bymA	97	12.53	b.34.1.2	24458
1va0A	239	12.63	c.90.1.1	119899
1y8xB	98	20.69		
2qwvA	208	25.08		
1jeiA	53	28.04	a.140.1.1	62918
2dc4A	165	28.87		
2c81A	418	29.18		
1wc2A	181	30.47		
1e0cA	271	34.10	c.46.1.2,c.46.1.2	32717,32718
2ggtA	164	40.78	c.47.1.10	135156
1h9fA	57	41.45	a.140.1.1	60826
1tl9A	339	45.49	d.3.1.3	112505
2f4lA	297	49.84	b.23.3.1	132927
1cbfA	285	50.54	c.90.1.1	35587
2hdeA	148	52.93		
3bn1A	373	54.69		
1sltA	134	56.43	b.29.1.3	24186
1yc5A	246	58.35	c.31.1.5	122910
1kxrA	339	59.27	d.3.1.3	73175
2vm1A	118	60.63		
1mdoA	393	61.50	c.67.1.4	79013
2vluA	122	63.12		
1lbqA	362	66.62	c.92.1.1	77877
2f51A	118	72.17		
1pchA	88	73.64	d.94.1.1	40564
1zylA	328	73.94		
1opd	85	74.00		
1o69A	394	74.13	c.67.1.4	92560
2j0nA	200	74.28	a.250.1.1	137899
1rhsA	296	76.26	c.46.1.2,c.46.1.2	32703,32704
2qmmA	197	80.38		
1qnrA	344	85.41	c.1.8.3	28834
2fjtA	182	85.47		
1opdA	85	87.42	d.94.1.1	40560
1pch	88	89.37