# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 5.24e-05 2gcxA 75 7.93e-05 1fx7A 230 0.06596 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1bi0 226 0.06639 2g6fX 59 2.380 3c0cA 73 2.485 1dj7B 75 2.718 b.34.4.3 24598 1bymA 97 3.423 b.34.1.2 24458 1gcqA 61 3.897 b.34.2.1 60434 1zlmA 58 4.493 2ak5A 64 5.020 1eejA 216 5.116 c.47.1.9,d.17.3.1 33057,38071 1qw1A 121 5.304 1e0cA 271 5.466 c.46.1.2,c.46.1.2 32717,32718 1aboA 62 5.606 b.34.2.1 24474 2a08A 60 6.681 2pu9B 74 6.859 2drmA 58 6.999 1hd3A 62 7.070 b.34.2.1 65802 1w70A 60 7.916 1zx6A 58 7.945 1ootA 60 8.434 b.34.2.1 93386 1wyxA 69 8.738 2a28A 54 8.773 1tuc 63 8.901 2d1xA 66 9.284 1u06A 62 9.450 b.34.2.1 119404 2j6fA 62 9.516 1noaA 113 9.862 b.1.7.1 22208 1utiA 58 10.15 b.34.2.1 99962 1bbzA 58 10.19 b.34.2.1 24477 1oebA 62 10.31 b.34.2.1 86909 1semA 58 10.68 b.34.2.1 24544 2dtr 226 10.87 2mcm 112 10.93 1j48A 110 11.17 b.1.7.1 84112 1uarA 285 11.51 c.46.1.2,c.46.1.2 107762,107763 2gncA 60 11.59 1rhsA 296 12.09 c.46.1.2,c.46.1.2 32703,32704 2jngA 105 12.24 2bzyA 67 12.52 2bz8A 58 15.64 1gcpA 70 17.74 b.34.2.1 60430 1z9zA 60 18.58 1cbfA 285 19.08 c.90.1.1 35587 2ggrA 76 19.26 2o88A 58 21.12 2v1qA 60 21.20 2j05A 65 21.28 1va0A 239 21.70 c.90.1.1 119899 1widA 130 21.86 b.142.1.2 114667 1rhs 296 22.91 2mcmA 112 23.88 b.1.7.1 22207 2o31A 67 24.14 1efnA 59 24.39 b.34.2.1 24465 3cnvA 162 25.31 1phtA 85 29.36 b.34.2.1 24483 1ov3A 138 29.49 b.34.2.1,b.34.2.1 87451,87452 1kzlA 208 29.52 b.43.4.3,b.43.4.3 77635,77636 2o1qA 145 31.55 1uj0A 62 33.97 b.34.2.1 99449 2iimA 62 34.66 b.34.2.1 137434 3vub 101 34.68 1ckaA 57 35.10 b.34.2.1 24459 2fpeA 62 36.78 2o9sA 67 37.06 1jegA 83 39.24 b.34.2.1 66610 1azgB 67 40.36 b.34.2.1 24471 2de0X 526 40.81 2ooiA 162 43.88 2i6vA 87 47.45 1q7sA 117 47.85 c.131.1.1 96055 1shfA 59 47.92 b.34.2.1 24462 1ywpA 64 48.34 1b07A 59 49.15 b.34.2.1 24461 2elfA 370 49.62 2nxcA 254 49.63 c.66.1.39 138739 2yxyA 115 49.71 1pjqA 457 52.88 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 1x2kA 68 53.24 1ng2A 193 54.06 b.34.2.1,b.34.2.1 85660,85661 2heqA 84 55.58 1sf9A 128 56.29 b.34.15.1 98831 1ug1A 92 56.98 b.34.2.1 99360 1qp2A 70 57.21 b.34.4.2 24596 1v7lA 163 58.01 c.8.2.1 113562 1griA 217 58.26 b.34.2.1,b.34.2.1,d.93.1.1 24531,24532,40473 1yn8A 59 58.70 2pp6A 102 58.89 1dcjA 81 58.99 d.68.3.3 59115 1azeA 56 60.08 b.34.2.1 24536 1wlpB 138 61.40 b.34.2.1 121010 1wlfA 179 61.92 d.31.1.1,b.52.2.3 109396,109397 1suuA 312 62.04 b.68.10.1 99006 1wn2A 121 64.86 1k1zA 78 65.11 b.34.2.1 68026 1nxzA 246 65.52 b.122.1.2,c.116.1.5 86391,86392 1bu1A 57 65.64 b.34.2.1 24499 1gcqC 70 65.86 b.34.2.1 60436 1i8dA 213 66.60 b.43.4.3,b.43.4.3 61953,61954 1fjcA 96 66.94 d.58.7.1 39212 1hf2A 210 67.40 b.80.3.1,c.102.1.1 60992,60993 2z9iA 324 67.82 1y0mA 61 68.10 1pht 85 68.54 1b4aA 149 68.62 a.4.5.3,d.74.2.1 16088,39721 1ktbA 405 69.37 b.71.1.1,c.1.8.1 72960,72961 1o6aA 96 70.75 b.139.1.1 92562 2a14A 263 72.21 c.66.1.15 125972 3vubA 101 72.35 b.34.6.1 24613 1jb0E 75 73.00 b.34.4.2 62824 1iz6A 138 73.36 b.34.5.2,b.40.4.5 76976,76977 1ruwA 69 74.70 1qcsA 211 74.99 b.52.2.3,d.31.1.1 26927,38461 1l3iA 192 76.87 c.66.1.22 77676 2ostA 151 77.35 2qtxA 71 77.78 1cmbA 104 78.93 a.43.1.5 17460 1bkfA 107 79.47 d.26.1.1 38382 2qk0A 74 79.50 1yleA 342 80.68 d.108.1.8 123647 1oruA 195 83.07 b.58.1.2 93464 2i62A 265 83.21 1vggA 161 83.78 d.256.1.1 113647 1bkf 107 84.05 2f5kA 102 85.34 b.34.13.3 132995 2v31A 112 86.59 2qq9A 226 86.63 2oggA 152 87.87 1wi5A 119 89.96 b.40.4.5 114661