# TARGET T0492 # Using neural net dunbrack-40pc-3157-t06-IDGaaH13-3-13-7-13-9-13-11-pb-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 16 (1 pb ) # The input amino acid frequencies were determined from # alignment T0492.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 61.5359 # Pos AA A B C D E F G H I J K L M N O P 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.093 0.086 0.291 0.312 0.002 0.018 0.007 0.002 0.026 0.003 0.006 0.009 0.034 0.001 0.003 0.107 2 F 0.049 0.030 0.294 0.608 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.002 0.004 0.001 0.001 0.003 3 S 0.001 0.001 0.004 0.010 0.003 0.978 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 4 L 0.001 0.013 0.001 0.006 0.002 0.024 0.001 0.002 0.001 0.001 0.946 0.001 0.004 0.001 0.001 0.001 5 R 0.001 0.076 0.001 0.013 0.001 0.001 0.001 0.003 0.006 0.001 0.002 0.887 0.004 0.001 0.004 0.001 6 D 0.011 0.009 0.163 0.059 0.004 0.006 0.034 0.003 0.026 0.003 0.007 0.006 0.229 0.009 0.027 0.403 7 A 0.052 0.007 0.804 0.036 0.005 0.005 0.008 0.004 0.001 0.001 0.004 0.003 0.037 0.001 0.005 0.026 8 K 0.003 0.001 0.007 0.002 0.627 0.017 0.155 0.001 0.001 0.001 0.001 0.001 0.002 0.182 0.001 0.001 9 C 0.001 0.002 0.001 0.002 0.001 0.002 0.001 0.888 0.001 0.001 0.006 0.001 0.001 0.001 0.097 0.001 10 G 0.001 0.010 0.001 0.003 0.001 0.001 0.001 0.001 0.831 0.076 0.001 0.003 0.001 0.001 0.001 0.073 11 Q 0.985 0.002 0.005 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 12 T 0.002 0.011 0.952 0.032 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 13 V 0.005 0.005 0.126 0.862 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 14 K 0.001 0.002 0.054 0.938 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 15 V 0.001 0.001 0.004 0.457 0.068 0.460 0.001 0.001 0.001 0.001 0.008 0.001 0.001 0.001 0.001 0.001 16 V 0.001 0.649 0.003 0.314 0.003 0.005 0.001 0.018 0.001 0.001 0.003 0.004 0.001 0.001 0.001 0.001 17 K 0.001 0.010 0.004 0.891 0.011 0.036 0.001 0.004 0.022 0.005 0.007 0.002 0.002 0.001 0.001 0.003 18 L 0.038 0.022 0.450 0.208 0.149 0.036 0.030 0.018 0.001 0.003 0.024 0.005 0.009 0.002 0.001 0.003 19 H 0.005 0.108 0.050 0.490 0.026 0.149 0.002 0.096 0.007 0.014 0.014 0.021 0.010 0.001 0.005 0.004 20 G 0.008 0.019 0.010 0.104 0.444 0.154 0.027 0.010 0.017 0.053 0.091 0.018 0.018 0.019 0.001 0.008 21 T 0.019 0.085 0.013 0.042 0.003 0.164 0.001 0.339 0.004 0.004 0.125 0.107 0.045 0.001 0.048 0.001 22 G 0.002 0.008 0.008 0.013 0.001 0.028 0.001 0.004 0.060 0.095 0.440 0.194 0.120 0.001 0.001 0.025 23 A 0.044 0.006 0.003 0.006 0.001 0.014 0.001 0.001 0.001 0.001 0.065 0.584 0.273 0.001 0.001 0.001 24 L 0.001 0.002 0.008 0.003 0.001 0.013 0.001 0.001 0.001 0.001 0.038 0.078 0.855 0.001 0.001 0.001 25 K 0.001 0.006 0.002 0.004 0.001 0.005 0.001 0.001 0.001 0.001 0.008 0.057 0.916 0.001 0.001 0.001 26 R 0.001 0.001 0.001 0.010 0.001 0.002 0.001 0.001 0.001 0.001 0.003 0.009 0.972 0.001 0.001 0.001 27 R 0.001 0.001 0.001 0.002 0.001 0.015 0.001 0.001 0.001 0.001 0.001 0.011 0.967 0.001 0.001 0.001 28 I 0.001 0.001 0.001 0.003 0.001 0.004 0.005 0.001 0.001 0.001 0.006 0.004 0.966 0.007 0.001 0.002 29 M 0.001 0.003 0.003 0.002 0.001 0.001 0.002 0.001 0.001 0.001 0.003 0.013 0.956 0.001 0.013 0.002 30 D 0.001 0.001 0.001 0.002 0.001 0.001 0.013 0.001 0.001 0.001 0.001 0.001 0.157 0.767 0.002 0.052 31 M 0.006 0.002 0.050 0.004 0.001 0.001 0.013 0.005 0.001 0.001 0.001 0.001 0.118 0.003 0.787 0.008 32 G 0.004 0.004 0.080 0.007 0.001 0.004 0.018 0.001 0.008 0.006 0.003 0.001 0.101 0.004 0.002 0.756 33 I 0.790 0.013 0.055 0.065 0.005 0.006 0.003 0.002 0.001 0.001 0.003 0.007 0.037 0.001 0.002 0.009 34 T 0.001 0.003 0.009 0.004 0.630 0.029 0.144 0.001 0.001 0.001 0.002 0.001 0.003 0.174 0.001 0.001 35 R 0.001 0.003 0.001 0.003 0.001 0.002 0.001 0.863 0.001 0.001 0.005 0.001 0.001 0.001 0.121 0.001 36 G 0.001 0.008 0.001 0.005 0.001 0.001 0.001 0.001 0.883 0.060 0.001 0.002 0.001 0.001 0.001 0.038 37 C 0.982 0.002 0.007 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 38 E 0.002 0.002 0.915 0.078 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 39 I 0.002 0.004 0.073 0.919 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 40 Y 0.001 0.001 0.007 0.989 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 41 I 0.001 0.002 0.005 0.820 0.031 0.138 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 42 R 0.001 0.146 0.005 0.813 0.007 0.013 0.001 0.011 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 43 K 0.001 0.012 0.004 0.894 0.013 0.048 0.001 0.007 0.006 0.002 0.009 0.001 0.001 0.001 0.001 0.001 44 V 0.010 0.110 0.149 0.668 0.019 0.013 0.003 0.008 0.003 0.002 0.006 0.003 0.003 0.001 0.001 0.003 45 A 0.007 0.015 0.037 0.411 0.071 0.415 0.003 0.009 0.003 0.011 0.004 0.007 0.006 0.001 0.001 0.001 46 P 0.002 0.022 0.007 0.029 0.668 0.076 0.030 0.011 0.001 0.002 0.117 0.002 0.003 0.028 0.001 0.001 47 L 0.002 0.076 0.002 0.039 0.005 0.016 0.001 0.723 0.009 0.002 0.023 0.035 0.002 0.001 0.064 0.001 48 G 0.005 0.029 0.025 0.039 0.001 0.004 0.002 0.005 0.589 0.115 0.008 0.010 0.007 0.001 0.003 0.158 49 D 0.777 0.027 0.066 0.058 0.001 0.022 0.006 0.001 0.004 0.002 0.004 0.015 0.011 0.001 0.001 0.006 50 P 0.025 0.044 0.667 0.193 0.001 0.028 0.001 0.004 0.001 0.001 0.019 0.004 0.008 0.001 0.001 0.003 51 I 0.006 0.055 0.114 0.800 0.001 0.009 0.001 0.001 0.001 0.001 0.003 0.006 0.003 0.001 0.001 0.001 52 Q 0.002 0.003 0.056 0.935 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 53 I 0.001 0.002 0.060 0.929 0.003 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 54 N 0.001 0.003 0.013 0.790 0.145 0.045 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 55 V 0.001 0.001 0.001 0.023 0.886 0.079 0.003 0.003 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 56 R 0.001 0.128 0.001 0.035 0.002 0.008 0.001 0.792 0.007 0.002 0.016 0.002 0.001 0.001 0.007 0.001 57 G 0.007 0.016 0.005 0.082 0.001 0.005 0.001 0.003 0.765 0.075 0.006 0.010 0.001 0.001 0.001 0.022 58 Y 0.747 0.018 0.168 0.035 0.001 0.007 0.001 0.001 0.001 0.001 0.004 0.012 0.004 0.001 0.001 0.002 59 E 0.009 0.012 0.415 0.441 0.001 0.043 0.001 0.002 0.001 0.001 0.059 0.006 0.010 0.001 0.001 0.001 60 L 0.001 0.025 0.053 0.805 0.003 0.039 0.001 0.001 0.001 0.001 0.014 0.016 0.042 0.001 0.001 0.001 61 S 0.001 0.011 0.008 0.936 0.006 0.012 0.001 0.001 0.001 0.001 0.003 0.002 0.018 0.001 0.001 0.002 62 L 0.002 0.030 0.026 0.843 0.008 0.051 0.001 0.003 0.001 0.001 0.001 0.003 0.028 0.001 0.001 0.001 63 R 0.001 0.013 0.010 0.072 0.012 0.825 0.001 0.008 0.001 0.005 0.016 0.003 0.030 0.001 0.001 0.002 64 K 0.004 0.038 0.004 0.024 0.004 0.090 0.002 0.012 0.002 0.001 0.763 0.018 0.034 0.002 0.001 0.001 65 S 0.002 0.103 0.006 0.019 0.001 0.027 0.002 0.005 0.003 0.001 0.051 0.675 0.094 0.001 0.007 0.003 66 A 0.006 0.012 0.016 0.007 0.004 0.023 0.022 0.001 0.004 0.001 0.033 0.065 0.693 0.029 0.009 0.073 67 A 0.008 0.006 0.049 0.006 0.002 0.024 0.050 0.008 0.001 0.001 0.048 0.043 0.661 0.049 0.033 0.012 68 E 0.006 0.147 0.081 0.033 0.001 0.006 0.019 0.014 0.009 0.004 0.007 0.048 0.366 0.008 0.166 0.086 69 M 0.061 0.010 0.110 0.112 0.001 0.003 0.009 0.001 0.025 0.001 0.003 0.002 0.141 0.009 0.010 0.502 70 I 0.030 0.003 0.902 0.034 0.001 0.002 0.004 0.001 0.001 0.001 0.001 0.001 0.016 0.001 0.001 0.007 71 E 0.008 0.031 0.371 0.531 0.004 0.025 0.003 0.001 0.001 0.001 0.001 0.001 0.014 0.001 0.001 0.007 72 V 0.005 0.016 0.025 0.510 0.092 0.311 0.010 0.001 0.001 0.001 0.009 0.002 0.012 0.002 0.001 0.001 73 E 0.002 0.309 0.031 0.253 0.076 0.134 0.010 0.057 0.003 0.002 0.086 0.015 0.012 0.005 0.003 0.003