# TARGET T0492 # Using neural net dunbrack-40pc-3157-t06-IDGaaH13-3-13-7-13-9-13-11-n_sep-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 20 (1 n_sep ) # The input amino acid frequencies were determined from # alignment T0492.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 61.5359 # Pos AA G H I J K L M N P Q R S T U V W A B C D 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.137 0.035 0.018 0.002 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.103 0.020 0.069 0.602 2 F 0.060 0.030 0.009 0.002 0.005 0.003 0.004 0.003 0.001 0.001 0.004 0.001 0.009 0.006 0.002 0.002 0.283 0.013 0.132 0.429 3 S 0.011 0.012 0.004 0.001 0.005 0.002 0.003 0.002 0.001 0.006 0.003 0.001 0.001 0.001 0.002 0.002 0.060 0.004 0.101 0.780 4 L 0.020 0.025 0.003 0.001 0.002 0.002 0.003 0.002 0.012 0.002 0.001 0.001 0.001 0.001 0.002 0.002 0.431 0.003 0.049 0.440 5 R 0.019 0.073 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.146 0.004 0.408 0.336 6 D 0.362 0.049 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.003 0.003 0.002 0.001 0.066 0.072 0.134 0.299 7 A 0.575 0.115 0.039 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.003 0.001 0.005 0.002 0.001 0.001 0.028 0.026 0.046 0.155 8 K 0.058 0.056 0.005 0.001 0.001 0.001 0.001 0.001 0.008 0.013 0.003 0.001 0.001 0.001 0.001 0.001 0.063 0.014 0.323 0.450 9 C 0.014 0.025 0.008 0.002 0.004 0.001 0.001 0.001 0.013 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.048 0.005 0.042 0.835 10 G 0.076 0.058 0.003 0.003 0.001 0.005 0.007 0.002 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.433 0.033 0.170 0.203 11 Q 0.504 0.008 0.014 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.109 0.031 0.089 0.240 12 T 0.037 0.011 0.019 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.453 0.004 0.111 0.356 13 V 0.007 0.003 0.002 0.001 0.003 0.004 0.003 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.807 0.004 0.043 0.121 14 K 0.002 0.001 0.001 0.001 0.009 0.011 0.014 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.889 0.001 0.029 0.038 15 V 0.001 0.001 0.001 0.001 0.002 0.001 0.004 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.002 0.855 0.001 0.009 0.120 16 V 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.004 0.001 0.001 0.001 0.001 0.002 0.005 0.008 0.005 0.938 0.001 0.013 0.020 17 K 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.014 0.027 0.005 0.514 0.001 0.020 0.401 18 L 0.009 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.001 0.012 0.004 0.022 0.028 0.016 0.008 0.608 0.004 0.089 0.188 19 H 0.017 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.011 0.009 0.013 0.003 0.006 0.004 0.003 0.003 0.429 0.006 0.095 0.396 20 G 0.027 0.003 0.002 0.001 0.001 0.001 0.001 0.001 0.014 0.002 0.005 0.002 0.001 0.001 0.001 0.001 0.102 0.006 0.187 0.649 21 T 0.020 0.005 0.002 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.071 0.005 0.205 0.688 22 G 0.026 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.010 0.009 0.085 0.859 23 A 0.038 0.030 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.007 0.272 0.644 24 L 0.029 0.124 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.005 0.538 0.296 25 K 0.030 0.786 0.002 0.001 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.003 0.022 0.144 26 R 0.008 0.914 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.002 0.009 0.062 27 R 0.008 0.964 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.023 28 I 0.004 0.986 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.007 29 M 0.010 0.981 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.001 0.001 0.002 30 D 0.017 0.950 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.016 0.001 0.010 31 M 0.126 0.704 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.149 0.001 0.011 32 G 0.505 0.169 0.029 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.007 0.213 0.008 0.064 33 I 0.010 0.011 0.870 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.004 0.018 0.079 34 T 0.026 0.034 0.026 0.023 0.001 0.001 0.001 0.001 0.028 0.017 0.004 0.001 0.001 0.001 0.001 0.001 0.182 0.014 0.235 0.405 35 R 0.006 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.024 0.001 0.029 0.934 36 G 0.015 0.010 0.001 0.001 0.001 0.001 0.002 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.443 0.007 0.181 0.335 37 C 0.692 0.002 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.098 0.020 0.037 0.144 38 E 0.027 0.012 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.446 0.003 0.096 0.406 39 I 0.007 0.004 0.002 0.001 0.023 0.005 0.003 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.695 0.006 0.043 0.208 40 Y 0.002 0.002 0.001 0.001 0.004 0.018 0.007 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.887 0.001 0.022 0.048 41 I 0.001 0.001 0.001 0.001 0.002 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.003 0.726 0.001 0.015 0.239 42 R 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.004 0.001 0.001 0.001 0.001 0.003 0.009 0.011 0.006 0.918 0.001 0.014 0.027 43 K 0.007 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.009 0.024 0.021 0.006 0.617 0.002 0.026 0.276 44 V 0.021 0.005 0.002 0.001 0.001 0.001 0.001 0.001 0.012 0.002 0.038 0.007 0.055 0.044 0.014 0.011 0.347 0.007 0.078 0.355 45 A 0.024 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.060 0.014 0.006 0.007 0.008 0.007 0.005 0.358 0.006 0.057 0.439 46 P 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.013 0.001 0.027 0.949 47 L 0.012 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.253 0.003 0.052 0.671 48 G 0.137 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.155 0.030 0.039 0.633 49 D 0.181 0.001 0.008 0.001 0.026 0.002 0.002 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.054 0.005 0.313 0.400 50 P 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.011 0.001 0.001 0.988 51 I 0.003 0.001 0.001 0.001 0.025 0.106 0.020 0.017 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.003 0.642 0.002 0.089 0.087 52 Q 0.018 0.001 0.001 0.001 0.005 0.004 0.010 0.006 0.001 0.001 0.001 0.001 0.002 0.010 0.017 0.012 0.535 0.002 0.049 0.327 53 I 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.001 0.001 0.002 0.001 0.044 0.093 0.043 0.013 0.723 0.001 0.016 0.055 54 N 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.005 0.001 0.012 0.004 0.002 0.001 0.885 0.001 0.017 0.064 55 V 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.152 0.025 0.005 0.001 0.002 0.001 0.001 0.002 0.653 0.001 0.070 0.083 56 R 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.020 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.467 0.002 0.120 0.384 57 G 0.012 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.178 0.014 0.178 0.612 58 Y 0.312 0.002 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.092 0.045 0.129 0.409 59 E 0.034 0.013 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.341 0.006 0.201 0.398 60 L 0.019 0.035 0.007 0.001 0.237 0.018 0.007 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.319 0.012 0.089 0.248 61 S 0.022 0.065 0.003 0.001 0.029 0.096 0.035 0.010 0.001 0.001 0.001 0.001 0.004 0.005 0.003 0.005 0.528 0.009 0.055 0.127 62 L 0.034 0.088 0.003 0.001 0.001 0.006 0.007 0.004 0.001 0.001 0.001 0.001 0.003 0.002 0.001 0.002 0.619 0.007 0.059 0.159 63 R 0.047 0.134 0.009 0.001 0.001 0.001 0.001 0.002 0.004 0.004 0.004 0.001 0.001 0.001 0.001 0.002 0.271 0.012 0.181 0.324 64 K 0.025 0.072 0.003 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.148 0.008 0.069 0.669 65 S 0.008 0.066 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.023 0.006 0.237 0.657 66 A 0.332 0.090 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.027 0.037 0.254 0.253 67 A 0.120 0.688 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.026 0.006 0.023 0.125 68 E 0.132 0.449 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.251 0.019 0.027 0.115 69 M 0.226 0.271 0.016 0.001 0.002 0.004 0.003 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.128 0.043 0.037 0.264 70 I 0.117 0.161 0.032 0.002 0.001 0.001 0.005 0.002 0.001 0.001 0.001 0.001 0.001 0.003 0.003 0.002 0.432 0.036 0.020 0.179 71 E 0.016 0.052 0.011 0.002 0.002 0.001 0.005 0.004 0.001 0.001 0.001 0.001 0.003 0.008 0.011 0.005 0.557 0.012 0.045 0.265 72 V 0.006 0.024 0.016 0.003 0.002 0.001 0.003 0.002 0.003 0.001 0.002 0.001 0.007 0.018 0.032 0.008 0.513 0.006 0.031 0.324 73 E 0.005 0.011 0.003 0.001 0.001 0.001 0.001 0.001 0.003 0.002 0.002 0.001 0.004 0.006 0.007 0.003 0.709 0.004 0.043 0.195