# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	2.11e-10		
2gcxA	75	6.28e-10		
1qw1A	121	0.000800		
1fx7A	230	0.000985	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2dtrA	226	0.001477	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
2qq9A	226	0.007296		
1rhsA	296	6.574	c.46.1.2,c.46.1.2	32703,32704
1rhs	296	7.325		
1cbfA	285	9.547	c.90.1.1	35587
1ve2A	235	12.39	c.90.1.1	120008
1j48A	110	12.75	b.1.7.1	84112
2fa1A	160	15.82	d.190.1.2	133182
1uarA	285	17.30	c.46.1.2,c.46.1.2	107762,107763
1ri5A	298	17.55	c.66.1.34	97502
1va0A	239	17.96	c.90.1.1	119899
2ikkA	173	18.95		
2p19A	149	21.37		
2egxA	269	22.25		
1vekA	84	23.59	a.5.2.1	113636
1e0cA	271	23.81	c.46.1.2,c.46.1.2	32717,32718
2f4lA	297	24.66	b.23.3.1	132927
2oggA	152	25.16		
2c81A	418	26.11		
3bmvA	683	26.73		
2bb3A	221	28.08	c.90.1.1	128257
3cnvA	162	29.98		
2d1hA	109	30.10	a.4.5.50	131125
1zc1A	208	30.23		
2j85A	122	31.04	d.321.1.1	138133
1y8xB	98	31.51		
2py6A	409	35.69		
1h75A	81	38.03	c.47.1.1	60716
1z6nA	167	38.20	c.47.1.1	124530
2pieA	138	39.40		
1z3eB	73	43.28	a.60.3.1	124401
2ccqA	99	44.96	d.314.1.1	130252
2v3mA	131	45.34		
1o69A	394	46.22	c.67.1.4	92560
1xdnA	277	46.72	d.142.2.4	115168
1opdA	85	49.04	d.94.1.1	40560
1nrwA	288	49.16	c.108.1.10	86128
1pchA	88	49.30	d.94.1.1	40564
1zccA	248	49.31	c.1.18.3	124903
2ooiA	162	52.55		
2pkhA	148	52.70		
2zgwA	235	53.84		
2nwiA	172	54.16		
1r1gA	31	56.17	g.3.7.2	96816
2p4gA	270	57.73		
3bwgA	239	59.57		
1kpgA	287	60.03	c.66.1.18	68735
2nygA	273	60.59		
1gsjA	258	65.19	c.73.1.2	70397
1ptfA	88	65.66	d.94.1.1	40549
2bl9A	238	66.04		
2eayA	233	69.17		
2fziA	206	70.17	c.71.1.1	134448
2dekA	265	74.74	c.90.1.1	131430
1f46A	140	75.35	d.129.4.1	59643
1dv0A	47	79.41	a.5.2.1	16289
3bpdA	100	85.47		
2h1rA	299	85.69		
2qpqA	301	86.98		
1q0uA	219	89.79	c.37.1.19	95512