# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	2.57e-10		
2gcxA	75	8.00e-10		
1fx7A	230	0.000711	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2dtrA	226	0.001057	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1qw1A	121	0.001273		
2qq9A	226	0.009081		
1j48A	110	6.812	b.1.7.1	84112
1rhsA	296	9.851	c.46.1.2,c.46.1.2	32703,32704
1rhs	296	10.11		
1uarA	285	13.31	c.46.1.2,c.46.1.2	107762,107763
1cbfA	285	16.65	c.90.1.1	35587
1ve2A	235	18.88	c.90.1.1	120008
1y8xB	98	19.82		
1h75A	81	21.21	c.47.1.1	60716
2f4lA	297	22.47	b.23.3.1	132927
1vekA	84	22.49	a.5.2.1	113636
2py6A	409	23.59		
1e0cA	271	27.44	c.46.1.2,c.46.1.2	32717,32718
2ikkA	173	29.84		
1z6nA	167	32.58	c.47.1.1	124530
1ri5A	298	32.58	c.66.1.34	97502
1zc1A	208	33.39		
2fa1A	160	33.85	d.190.1.2	133182
2p19A	149	34.44		
1zccA	248	35.23	c.1.18.3	124903
1wp5A	323	35.42	b.68.10.1	114780
2oggA	152	35.89		
1va0A	239	36.73	c.90.1.1	119899
1r1gA	31	37.60	g.3.7.2	96816
2v3mA	131	39.34		
1xdnA	277	40.93	d.142.2.4	115168
3cnvA	162	41.43		
2pieA	138	46.24		
2c81A	418	46.90		
1opdA	85	47.19	d.94.1.1	40560
2zgwA	235	48.29		
1fqtA	112	50.74	b.33.1.1	24441
2dekA	265	53.14	c.90.1.1	131430
2d1hA	109	54.08	a.4.5.50	131125
1i8dA	213	55.11	b.43.4.3,b.43.4.3	61953,61954
2ooiA	162	55.74		
1ptfA	88	63.25	d.94.1.1	40549
1pchA	88	64.69	d.94.1.1	40564
2pkhA	148	64.91		
2bb3A	221	66.09	c.90.1.1	128257
2qvpA	275	66.46		
2egxA	269	66.88		
1f46A	140	70.38	d.129.4.1	59643
2nygA	273	73.80		
2j85A	122	73.97	d.321.1.1	138133
1z3eB	73	74.51	a.60.3.1	124401
1p9bA	442	80.57	c.37.1.10	94385
2uyoA	310	85.52		
3bn1A	373	85.56		
1twuA	139	85.70	d.32.1.8	107413
1vavA	222	87.37	b.29.1.18	108472
1widA	130	88.07	b.142.1.2	114667
2fziA	206	89.72	c.71.1.1	134448