# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2gcxA 75 1.01e-11 2h3jA 75 1.79e-11 1fx7A 230 5.91e-05 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1qw1A 121 0.000126 2dtrA 226 0.000676 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2qq9A 226 0.004694 1j48A 110 1.532 b.1.7.1 84112 1zc1A 208 3.116 1rhsA 296 4.442 c.46.1.2,c.46.1.2 32703,32704 3bn1A 373 4.554 1y8xB 98 4.555 1uarA 285 4.804 c.46.1.2,c.46.1.2 107762,107763 1rhs 296 5.256 2c81A 418 5.360 1opdA 85 6.682 d.94.1.1 40560 1o69A 394 6.881 c.67.1.4 92560 2nygA 273 7.437 1vekA 84 8.253 a.5.2.1 113636 1pchA 88 8.768 d.94.1.1 40564 1ptfA 88 10.34 d.94.1.1 40549 1h75A 81 10.64 c.47.1.1 60716 2fa1A 160 11.12 d.190.1.2 133182 2p19A 149 11.88 2zgwA 235 12.18 1e0cA 271 13.07 c.46.1.2,c.46.1.2 32717,32718 1o6aA 96 14.22 b.139.1.1 92562 2ogeA 399 15.74 2egxA 269 16.25 3cnvA 162 18.00 2eayA 233 18.98 1fqtA 112 19.25 b.33.1.1 24441 1gutA 68 20.61 b.40.6.1 65576 2ikkA 173 20.96 2aotA 292 21.22 c.66.1.19 127098 1vavA 222 21.34 b.29.1.18 108472 1pch 88 21.60 2f4lA 297 22.33 b.23.3.1 132927 2ooiA 162 24.07 1k0wA 231 24.61 c.74.1.1 77220 1nrwA 288 25.85 c.108.1.10 86128 1sphA 88 27.55 d.94.1.1 40544 1tl9A 339 30.70 d.3.1.3 112505 1h9mA 145 30.78 b.40.6.2,b.40.6.2 60833,60834 1gsjA 258 33.45 c.73.1.2 70397 1vg5A 73 33.69 a.5.2.1 113640 1i8dA 213 34.89 b.43.4.3,b.43.4.3 61953,61954 1fr3A 67 35.12 b.40.6.1 25436 2p3yA 491 35.28 2hdeA 148 35.49 2o55A 258 35.54 1z3eB 73 36.03 a.60.3.1 124401 2dx0A 138 36.60 1nf2A 268 36.82 c.108.1.10 91849 1ydgA 211 37.71 c.23.5.8 116614 2v3mA 131 38.54 1el6A 219 38.64 d.182.1.1 42606 3bhdA 234 40.08 1dv0A 47 40.70 a.5.2.1 16289 1zccA 248 41.59 c.1.18.3 124903 2a5lA 200 41.60 c.23.5.8 126176 1lvmA 229 41.91 b.47.1.3 78243 1qp8A 303 42.35 c.2.1.4,c.23.12.1 30092,31352 2pieA 138 44.87 1v95A 130 45.11 c.51.1.1 108435 1eluA 390 45.13 c.67.1.3 34434 2obfA 289 46.46 1wucA 250 47.61 2glwA 92 47.72 1qyrA 252 48.12 c.66.1.24 104657 1z2mA 155 48.89 d.15.1.1,d.15.1.1 124387,124388 1z02A 446 51.84 2d1hA 109 52.03 a.4.5.50 131125 2p4zA 284 52.30 1xdnA 277 53.21 d.142.2.4 115168 2iq1A 274 55.58 1khbA 625 55.92 c.91.1.1,c.109.1.1 68606,68607 2qwvA 208 56.17 1widA 130 57.45 b.142.1.2 114667 2fssA 365 57.55 2okfA 140 58.65 3ch0A 272 59.25 1vd6A 224 60.06 c.1.18.3 119991 2g8jA 339 60.60 d.3.1.3 134773 2j6iA 364 60.70 2pz0A 252 62.48 1yqbA 100 64.77 d.15.1.1 123876 2fjtA 182 65.01 3cq9A 227 65.15 1rttA 193 66.64 c.23.5.4 105098 2vqeN 61 67.51 2oogA 287 67.78 3d64A 494 67.78 2g29A 417 67.81 2hnfA 133 68.57 2yzvA 303 68.73 1ti6A 875 68.88 b.52.2.2,c.81.1.1 106974,106975 2cukA 311 68.90 2uubN 61 69.07 g.39.1.7 139945 1zetA 388 69.92 d.240.1.1,e.8.1.7 124997,124998 2ob3A 330 70.35 1mr7A 209 72.58 b.81.1.3 91430 1kzlA 208 72.87 b.43.4.3,b.43.4.3 77635,77636 1fjgN 61 73.87 g.39.1.7 45154 1kafA 108 74.36 d.199.1.1 68372 3c0dA 119 75.65 2jmwA 86 76.69 1im8A 244 76.80 c.66.1.14 66212 1cbfA 285 77.11 c.90.1.1 35587 2pkhA 148 79.45 2nwfA 141 80.45 1l5xA 280 81.20 c.106.1.1 77718 1va0A 239 81.98 c.90.1.1 119899 1brwA 433 83.09 a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 2if1A 126 83.89 d.64.1.1 39547 2pjhB 193 85.51 2od0A 105 85.87 2j85A 122 86.41 d.321.1.1 138133 1xs5A 241 86.43 c.94.1.1 115912 2dbqA 334 86.59 1r1gA 31 87.15 g.3.7.2 96816 1n28A 124 88.06 a.133.1.2 91550 2zbvA 263 88.52 1rfsA 139 88.64 b.33.1.1 24434 2qpqA 301 88.66 1opd 85 88.68 1gdhA 320 89.67 c.2.1.4,c.23.12.1 30095,31355