# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	9.24e-10		
2gcxA	75	3.39e-09		
2dtrA	226	0.002135	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1qw1A	121	0.003075		
1fx7A	230	0.003553	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2qq9A	226	0.01884		
1ri5A	298	7.270	c.66.1.34	97502
1rhsA	296	13.57	c.46.1.2,c.46.1.2	32703,32704
1o69A	394	15.76	c.67.1.4	92560
1rhs	296	16.96		
2c81A	418	17.12		
1q0uA	219	22.23	c.37.1.19	95512
2gkgA	127	22.77		
2ogeA	399	24.20		
1nrwA	288	25.07	c.108.1.10	86128
1j48A	110	26.02	b.1.7.1	84112
1vekA	84	27.46	a.5.2.1	113636
1h75A	81	27.64	c.47.1.1	60716
2d1hA	109	29.18	a.4.5.50	131125
1va0A	239	30.28	c.90.1.1	119899
1uarA	285	30.44	c.46.1.2,c.46.1.2	107762,107763
1ve2A	235	31.26	c.90.1.1	120008
1e0cA	271	32.86	c.46.1.2,c.46.1.2	32717,32718
1cbfA	285	34.25	c.90.1.1	35587
2bl9A	238	36.86		
1z3eB	73	37.07	a.60.3.1	124401
1nf2A	268	37.60	c.108.1.10	91849
1y8xB	98	37.99		
2dsjA	423	38.15		
2jbaA	127	43.45		
2gxqA	207	46.52		
1s95A	333	47.83	d.159.1.3	105375
2j85A	122	48.55	d.321.1.1	138133
2aouA	292	48.60	c.66.1.19	127100
1kpgA	287	49.72	c.66.1.18	68735
1nt4A	391	52.45	c.60.1.2	92102
1z6nA	167	52.93	c.47.1.1	124530
2fa1A	160	54.64	d.190.1.2	133182
2v3mA	131	55.36		
1b00A	127	56.07	c.23.1.1	31122
2pieA	138	57.29		
3bn1A	373	58.70		
1e4yA	214	59.45	c.37.1.1,g.41.2.1	31901,45181
2nygA	273	59.71		
2f4lA	297	60.17	b.23.3.1	132927
1fqtA	112	61.27	b.33.1.1	24441
1pchA	88	63.71	d.94.1.1	40564
1xs5A	241	64.52	c.94.1.1	115912
2qwvA	208	65.62		
2fziA	206	66.38	c.71.1.1	134448
2h1rA	299	69.81		
1opdA	85	69.85	d.94.1.1	40560
2oggA	152	70.76		
1zccA	248	71.31	c.1.18.3	124903
1qdeA	224	71.39	c.37.1.19	32410
1eluA	390	73.25	c.67.1.3	34434
2z26A	347	73.77		
1kmvA	186	73.94	c.71.1.1	72757
1p9bA	442	73.98	c.37.1.10	94385
2p19A	149	76.48		
1xdnA	277	78.95	d.142.2.4	115168
1vavA	222	79.60	b.29.1.18	108472
1zc1A	208	80.62		
1brwA	433	82.60	a.46.2.1,c.27.1.1,d.41.3.1	17764,31628,38626
1im8A	244	82.92	c.66.1.14	66212
2egxA	269	85.38		
2p4gA	270	88.69		
2zgwA	235	89.64		
1v95A	130	89.76	c.51.1.1	108435