# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	1.62e-10		
2gcxA	75	9.15e-10		
1fx7A	230	0.000917	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2dtrA	226	0.000962	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1qw1A	121	0.001297		
2qq9A	226	0.01070		
1rhsA	296	8.760	c.46.1.2,c.46.1.2	32703,32704
1rhs	296	11.54		
1o69A	394	12.53	c.67.1.4	92560
1ri5A	298	12.80	c.66.1.34	97502
2gkgA	127	14.16		
2c81A	418	17.19		
1j48A	110	18.25	b.1.7.1	84112
1q0uA	219	18.62	c.37.1.19	95512
1nrwA	288	19.72	c.108.1.10	86128
1ve2A	235	19.76	c.90.1.1	120008
2fa1A	160	22.00	d.190.1.2	133182
1uarA	285	22.41	c.46.1.2,c.46.1.2	107762,107763
1cbfA	285	23.21	c.90.1.1	35587
1vekA	84	23.94	a.5.2.1	113636
2jbaA	127	25.05		
1y8xB	98	27.07		
2ogeA	399	27.63		
1z3eB	73	30.37	a.60.3.1	124401
1h75A	81	30.46	c.47.1.1	60716
1e0cA	271	32.28	c.46.1.2,c.46.1.2	32717,32718
2d1hA	109	32.58	a.4.5.50	131125
1va0A	239	32.66	c.90.1.1	119899
2p19A	149	33.13		
2pieA	138	33.19		
1b00A	127	33.57	c.23.1.1	31122
1nf2A	268	34.56	c.108.1.10	91849
2gxqA	207	36.73		
2bl9A	238	38.18		
1pchA	88	40.53	d.94.1.1	40564
2j85A	122	41.46	d.321.1.1	138133
2oggA	152	41.53		
1z6nA	167	43.34	c.47.1.1	124530
2qwvA	208	44.07		
2f4lA	297	46.63	b.23.3.1	132927
2bb3A	221	47.58	c.90.1.1	128257
1opdA	85	47.87	d.94.1.1	40560
2v3mA	131	49.98		
2nygA	273	53.69		
2ikkA	173	54.33		
1fqtA	112	55.35	b.33.1.1	24441
2ccqA	99	55.64	d.314.1.1	130252
2egxA	269	55.69		
3bmvA	683	56.41		
2z0jA	237	56.67		
1zc1A	208	57.32		
3bn1A	373	59.38		
1kmvA	186	59.38	c.71.1.1	72757
1xdnA	277	64.33	d.142.2.4	115168
1qdeA	224	67.34	c.37.1.19	32410
2pkhA	148	71.61		
1f46A	140	71.94	d.129.4.1	59643
3cnvA	162	72.24		
2p4gA	270	73.02		
2aouA	292	73.04	c.66.1.19	127100
2ooiA	162	74.29		
2z26A	347	76.60		
1kpgA	287	76.65	c.66.1.18	68735
2dsjA	423	76.75		
1nt4A	391	77.20	c.60.1.2	92102
2fziA	206	79.87	c.71.1.1	134448
2ob3A	330	82.95		
1s95A	333	84.33	d.159.1.3	105375
1e4yA	214	84.61	c.37.1.1,g.41.2.1	31901,45181
1wucA	250	85.41		
1zccA	248	85.42	c.1.18.3	124903
2qpqA	301	85.88		
1cozA	129	86.91	c.26.1.2	31598
2h1rA	299	87.24