# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	1.84e-10		
2gcxA	75	9.01e-10		
2dtrA	226	0.000875	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1fx7A	230	0.001044	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
1qw1A	121	0.001414		
2qq9A	226	0.009534		
1ri5A	298	8.226	c.66.1.34	97502
1rhsA	296	8.556	c.46.1.2,c.46.1.2	32703,32704
1rhs	296	10.44		
1o69A	394	10.69	c.67.1.4	92560
2gkgA	127	12.33		
1ve2A	235	14.91	c.90.1.1	120008
2c81A	418	15.87		
2ogeA	399	16.08		
1cbfA	285	18.27	c.90.1.1	35587
2jbaA	127	19.14		
1j48A	110	19.49	b.1.7.1	84112
1h75A	81	22.21	c.47.1.1	60716
1nrwA	288	22.80	c.108.1.10	86128
1uarA	285	23.33	c.46.1.2,c.46.1.2	107762,107763
1vekA	84	24.56	a.5.2.1	113636
1b00A	127	24.67	c.23.1.1	31122
1va0A	239	25.79	c.90.1.1	119899
1y8xB	98	27.19		
2fa1A	160	28.36	d.190.1.2	133182
1q0uA	219	28.91	c.37.1.19	95512
1e0cA	271	29.38	c.46.1.2,c.46.1.2	32717,32718
1z3eB	73	31.22	a.60.3.1	124401
2pieA	138	33.00		
2p19A	149	35.52		
1nf2A	268	37.71	c.108.1.10	91849
2j85A	122	38.14	d.321.1.1	138133
1pchA	88	39.23	d.94.1.1	40564
2d1hA	109	40.22	a.4.5.50	131125
1opdA	85	40.27	d.94.1.1	40560
2bl9A	238	40.40		
2oggA	152	40.94		
2v3mA	131	44.39		
2f4lA	297	46.30	b.23.3.1	132927
2qwvA	208	47.08		
1z6nA	167	47.35	c.47.1.1	124530
1kpgA	287	48.31	c.66.1.18	68735
2aouA	292	51.22	c.66.1.19	127100
2nygA	273	52.65		
1s95A	333	52.87	d.159.1.3	105375
2z0jA	237	53.20		
2ikkA	173	56.17		
2ccqA	99	57.52	d.314.1.1	130252
1xdnA	277	58.89	d.142.2.4	115168
3bmvA	683	61.58		
1zccA	248	62.00	c.1.18.3	124903
1zc1A	208	62.14		
3bn1A	373	62.34		
2bb3A	221	62.54	c.90.1.1	128257
2gxqA	207	63.20		
2dsjA	423	66.51		
1kmvA	186	67.24	c.71.1.1	72757
2h1rA	299	69.14		
1nt4A	391	70.59	c.60.1.2	92102
1e4yA	214	71.13	c.37.1.1,g.41.2.1	31901,45181
1eluA	390	71.14	c.67.1.3	34434
1i3cA	149	71.35	c.23.1.1	71112
2egxA	269	72.46		
1qdeA	224	73.34	c.37.1.19	32410
2fziA	206	74.72	c.71.1.1	134448
1mb3A	124	75.30	c.23.1.1	78907
1xs5A	241	76.31	c.94.1.1	115912
3cnvA	162	76.61		
1f46A	140	77.69	d.129.4.1	59643
1fqtA	112	78.94	b.33.1.1	24441
2pkhA	148	81.65		
2z26A	347	84.09		
2p4gA	270	84.81		
2ooiA	162	85.51		
2aotA	292	88.51	c.66.1.19	127098