# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2gcxA	75	7.29e-10		
2h3jA	75	1.09e-09		
1qw1A	121	0.000449		
2dtrA	226	0.01387	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1fx7A	230	0.03073	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2qq9A	226	0.1631		
1rhsA	296	3.775	c.46.1.2,c.46.1.2	32703,32704
1uarA	285	3.777	c.46.1.2,c.46.1.2	107762,107763
1rhs	296	5.010		
1e0cA	271	10.67	c.46.1.2,c.46.1.2	32717,32718
1j48A	110	10.69	b.1.7.1	84112
1vekA	84	11.03	a.5.2.1	113636
1ri5A	298	12.34	c.66.1.34	97502
1h75A	81	13.97	c.47.1.1	60716
1y8xB	98	16.65		
1dv0A	47	19.02	a.5.2.1	16289
1z3eB	73	19.27	a.60.3.1	124401
3bpdA	100	31.86		
1xs5A	241	34.43	c.94.1.1	115912
1ptfA	88	34.93	d.94.1.1	40549
1zelA	298	37.59		
1pchA	88	39.65	d.94.1.1	40564
2hjhA	354	40.66		
1pgyA	47	42.42	a.5.2.1	94696
1cbfA	285	42.66	c.90.1.1	35587
1wwpA	119	45.04		
1opdA	85	46.97	d.94.1.1	40560
1vg5A	73	49.23	a.5.2.1	113640
2oqoA	200	51.32		
2if1A	126	55.81	d.64.1.1	39547
2pieA	138	57.06		
2gkgA	127	63.04		
2gxqA	207	63.48		
1q0uA	219	64.13	c.37.1.19	95512
1zccA	248	66.20	c.1.18.3	124903
1t0yA	122	67.52	d.15.1.1	99066
1zc1A	208	69.95		
1widA	130	71.75	b.142.1.2	114667
1kafA	108	75.74	d.199.1.1	68372
2h1rA	299	77.68		
1c4xA	285	79.75	c.69.1.10	34684
2qpqA	301	81.10		
1pch	88	84.02		
2fb1A	226	84.20	a.4.5.68,d.113.1.6	133225,133226
2dklA	85	86.09	a.5.2.1	131555
1eejA	216	87.78	c.47.1.9,d.17.3.1	33057,38071
1fr3A	67	88.19	b.40.6.1	25436
3cjpA	272	88.38		
2f5xA	312	89.87