# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	5.28e-11		
2gcxA	75	2.56e-10		
1fx7A	230	0.000332	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2dtrA	226	0.000471	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1qw1A	121	0.001194		
2qq9A	226	0.004341		
1rhsA	296	4.163	c.46.1.2,c.46.1.2	32703,32704
1rhs	296	4.972		
2c81A	418	7.968		
1ri5A	298	8.338	c.66.1.34	97502
1o69A	394	9.413	c.67.1.4	92560
1vekA	84	12.74	a.5.2.1	113636
1uarA	285	14.08	c.46.1.2,c.46.1.2	107762,107763
1cbfA	285	15.94	c.90.1.1	35587
1e0cA	271	16.79	c.46.1.2,c.46.1.2	32717,32718
1nrwA	288	17.27	c.108.1.10	86128
1h75A	81	18.32	c.47.1.1	60716
2aotA	292	20.89	c.66.1.19	127098
1z3eB	73	21.49	a.60.3.1	124401
2egxA	269	22.47		
2ogeA	399	22.99		
3bn1A	373	23.62		
1j48A	110	25.34	b.1.7.1	84112
1kpgA	287	25.60	c.66.1.18	68735
2d1hA	109	26.16	a.4.5.50	131125
2fa1A	160	26.90	d.190.1.2	133182
2j85A	122	27.54	d.321.1.1	138133
2p19A	149	27.73		
2nygA	273	29.60		
2ob3A	330	30.54		
1nf2A	268	31.52	c.108.1.10	91849
1va0A	239	32.65	c.90.1.1	119899
2ikkA	173	34.98		
2dsjA	423	36.49		
1eluA	390	38.66	c.67.1.3	34434
2bl9A	238	39.24		
1s95A	333	39.97	d.159.1.3	105375
1zc1A	208	41.12		
2gkgA	127	41.93		
3cnvA	162	42.62		
1zccA	248	45.62	c.1.18.3	124903
1wwpA	119	47.59		
1ve2A	235	48.94	c.90.1.1	120008
2qwvA	208	49.50		
1xdnA	277	49.93	d.142.2.4	115168
2oggA	152	50.15		
1p9bA	442	53.08	c.37.1.10	94385
2ooiA	162	53.92		
2v3mA	131	54.80		
2zgwA	235	54.99		
2aouA	292	59.05	c.66.1.19	127100
2pkhA	148	61.06		
1kafA	108	62.83	d.199.1.1	68372
3bpdA	100	63.06		
3bwgA	239	64.41		
1e4yA	214	65.44	c.37.1.1,g.41.2.1	31901,45181
1r3dA	264	65.62	c.69.1.35	111680
2etjA	250	67.04	c.55.3.1	132360
2p4gA	270	68.41		
2pieA	138	68.63		
2z0jA	237	68.99		
2bryA	497	71.48		
2f4lA	297	71.87	b.23.3.1	132927
1eejA	216	72.41	c.47.1.9,d.17.3.1	33057,38071
2eayA	233	74.88		
2bwbA	46	77.31	a.5.2.1	129329
2fjtA	182	77.90		
1brwA	433	78.19	a.46.2.1,c.27.1.1,d.41.3.1	17764,31628,38626
1vi9A	299	84.76	c.72.1.5	100750
2h1rA	299	84.88		
1im8A	244	85.82	c.66.1.14	66212
1fqtA	112	87.48	b.33.1.1	24441
1z6nA	167	87.98	c.47.1.1	124530
1gsjA	258	88.07	c.73.1.2	70397
1f46A	140	88.71	d.129.4.1	59643