# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 2.80e-12 2gcxA 75 1.66e-11 2dtrA 226 0.000226 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1fx7A 230 0.000276 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1qw1A 121 0.000485 2qq9A 226 0.07230 1nrwA 288 0.2593 c.108.1.10 86128 2fa1A 160 1.773 d.190.1.2 133182 1eejA 216 1.882 c.47.1.9,d.17.3.1 33057,38071 1f46A 140 3.618 d.129.4.1 59643 1p57A 114 4.130 d.170.1.2 94125 1ri5A 298 4.311 c.66.1.34 97502 1mb3A 124 6.676 c.23.1.1 78907 2gwmA 200 6.755 2r6uA 148 7.220 1im8A 244 7.260 c.66.1.14 66212 2qwvA 208 8.527 2fziA 206 9.033 c.71.1.1 134448 1nf2A 268 9.551 c.108.1.10 91849 2dsjA 423 9.881 1ddgA 374 10.21 b.43.4.1,c.25.1.4 25671,31559 2bb3A 221 10.97 c.90.1.1 128257 2gkgA 127 11.90 2i44A 324 11.98 1kqfB 294 12.06 d.58.1.5,f.23.22.1 75900,75901 2epgA 487 12.29 1s95A 333 13.48 d.159.1.3 105375 1rhsA 296 13.68 c.46.1.2,c.46.1.2 32703,32704 2puzA 419 13.97 1j48A 110 14.75 b.1.7.1 84112 2etjA 250 16.27 c.55.3.1 132360 1zx5A 300 17.26 b.82.1.3 125763 2ogeA 399 19.35 2basA 431 19.52 c.1.33.1,d.110.6.2 128244,128245 2cb0A 333 19.99 2z26A 347 20.38 1v73A 342 21.04 2vdjA 301 21.81 2jmwA 86 22.08 1vekA 84 22.09 a.5.2.1 113636 2prbA 196 22.20 1xx6A 191 22.41 c.37.1.24,g.39.1.14 116139,116140 2g3fA 421 22.49 2q8xA 331 23.70 2p19A 149 25.29 1h75A 81 25.37 c.47.1.1 60716 1ve2A 235 25.70 c.90.1.1 120008 1qh5A 260 25.75 d.157.1.2 42057 1z3eB 73 26.74 a.60.3.1 124401 2dnjA 260 28.43 d.151.1.1 41790 2b8nA 429 28.86 c.118.1.1 128093 1nrzA 164 29.74 c.38.1.1 86131 1ub0A 258 31.16 c.72.1.2 88394 1wr8A 231 31.86 c.108.1.10 114836 2ikkA 173 31.89 2v6oA 596 32.05 1a53A 247 33.19 c.1.2.4 28564 2uyoA 310 36.45 1l3iA 192 37.06 c.66.1.22 77676 1zvkA 358 37.50 3cnvA 162 37.69 2ghpA 292 40.94 d.58.7.1,d.58.7.1,d.58.7.1 135184,135185,135186 2ooiA 162 41.01 1kpgA 287 42.08 c.66.1.18 68735 2heuA 401 42.44 1qamA 244 42.55 c.66.1.24 34220 1c4kA 730 42.67 c.23.1.4,c.67.1.5,d.125.1.1 31273,34502,41123 2pkhA 148 43.45 2i2cA 272 43.52 1lrzA 426 43.72 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 2hjhA 354 44.58 2hpkA 208 44.85 2d1hA 109 46.00 a.4.5.50 131125 2olnA 397 46.30 2qm8A 337 46.38 1p4tA 155 46.73 f.4.1.1 87779 2oggA 152 46.99 2bl9A 238 47.03 2ejqA 130 48.53 1zc1A 208 52.24 2v3mA 131 53.94 3bpdA 100 54.25 1lkdA 297 54.43 d.32.1.3,d.32.1.3 78059,78060 2raqA 97 54.44 1ogdA 131 54.52 c.133.1.1 92893 1bqcA 302 54.72 c.1.8.3 28831 2hkjA 469 55.52 a.156.1.3,d.14.1.3,d.122.1.2 136553,136554,136555 4uagA 437 55.84 c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 2nygA 273 58.29 2f8yA 223 58.49 1io2A 213 58.83 c.55.3.1 62612 2gfiA 458 60.05 1aukA 489 61.80 c.76.1.2 35030 2jfgA 445 62.53 c.5.1.1,c.59.1.1,c.72.2.1 138306,138307,138308 1k1eA 180 62.71 c.108.1.5 67995 1qhlA 227 63.76 c.37.1.12 32382 1a79A 171 63.77 c.52.2.1,d.75.1.1 33340,39739 2p71A 132 69.07 a.39.2.1 139516 3b5vA 248 69.36 1wxxA 382 69.36 b.122.1.9,c.66.1.51 121418,121419 1wmdA 434 70.20 b.18.1.20,c.41.1.1 109408,109409 2pii 112 70.29 1zkcA 197 72.14 b.62.1.1 125182 1of5B 184 72.15 d.17.4.2 86934 2pjhB 193 73.50 2p4gA 270 74.28 2q6fA 309 74.96 2obwA 258 75.32 1wrbA 253 79.28 c.37.1.19 121192 2bm0A 691 79.83 b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1,d.58.11.1 128748,128749,128750,128751,128752 1t1gA 364 80.13 c.41.1.2 106246 2z0xA 158 80.32 1hs6A 611 80.42 a.118.1.7,b.98.1.1,d.92.1.13 61233,61234,61235 2bwnA 401 80.44 c.67.1.4 129368 1xs5A 241 81.86 c.94.1.1 115912 1fc6A 388 82.41 b.36.1.3,c.14.1.2 64738,64739 1rhs 296 84.65 1lvoA 302 85.14 b.47.1.4 74284 1va0A 239 85.90 c.90.1.1 119899 2nwiA 172 86.02 1gci 269 86.16 2eayA 233 86.61 2h1rA 299 87.32 2glwA 92 87.37 1twuA 139 87.40 d.32.1.8 107413 2ywwA 149 87.52 1kafA 108 88.42 d.199.1.1 68372 1k9uA 78 89.00 a.39.1.10 84348 2oap1 511 89.02 2j0fA 482 89.08 1d3gA 367 89.12 c.1.4.1 28600 3borA 237 89.41