# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	3.39e-12		
2gcxA	75	2.53e-11		
2dtrA	226	0.000154	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1fx7A	230	0.000183	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
1qw1A	121	0.000347		
2qq9A	226	0.002301		
1rhsA	296	3.271	c.46.1.2,c.46.1.2	32703,32704
1rhs	296	4.350		
1cbfA	285	8.337	c.90.1.1	35587
1j48A	110	9.263	b.1.7.1	84112
1o69A	394	9.733	c.67.1.4	92560
2c81A	418	11.53		
1vekA	84	12.10	a.5.2.1	113636
1ri5A	298	13.06	c.66.1.34	97502
1uarA	285	13.17	c.46.1.2,c.46.1.2	107762,107763
1h75A	81	14.08	c.47.1.1	60716
1va0A	239	16.43	c.90.1.1	119899
1e0cA	271	18.44	c.46.1.2,c.46.1.2	32717,32718
2egxA	269	18.90		
1nrwA	288	19.92	c.108.1.10	86128
1ve2A	235	20.84	c.90.1.1	120008
2fa1A	160	20.98	d.190.1.2	133182
2pieA	138	25.82		
2d1hA	109	26.23	a.4.5.50	131125
1z3eB	73	26.37	a.60.3.1	124401
2p19A	149	27.04		
2j85A	122	29.42	d.321.1.1	138133
2ikkA	173	32.74		
2gkgA	127	35.34		
2dsjA	423	35.68		
2ogeA	399	36.08		
3bn1A	373	38.34		
3bmvA	683	39.17		
2z0jA	237	41.50		
2ob3A	330	42.56		
3cnvA	162	43.32		
2aotA	292	43.66	c.66.1.19	127098
1f46A	140	44.18	d.129.4.1	59643
1kpgA	287	46.53	c.66.1.18	68735
2bryA	497	46.64		
2v3mA	131	47.15		
1zccA	248	48.67	c.1.18.3	124903
2bl9A	238	50.70		
3bwgA	239	51.97		
1nf2A	268	52.87	c.108.1.10	91849
1zc1A	208	54.75		
2oggA	152	54.77		
1y8xB	98	55.12		
1opdA	85	55.77	d.94.1.1	40560
2ooiA	162	58.61		
1pchA	88	59.09	d.94.1.1	40564
1wwpA	119	59.12		
2py6A	409	59.36		
1r3dA	264	60.12	c.69.1.35	111680
2qwvA	208	61.03		
2pkhA	148	62.32		
2etjA	250	64.60	c.55.3.1	132360
1eluA	390	65.57	c.67.1.3	34434
2nygA	273	67.62		
1q0uA	219	69.55	c.37.1.19	95512
1z6nA	167	71.23	c.47.1.1	124530
2bwbA	46	71.81	a.5.2.1	129329
1s95A	333	73.22	d.159.1.3	105375
3bpdA	100	73.24		
2gxqA	207	74.39		
2qm8A	337	75.92		
2ccqA	99	76.97	d.314.1.1	130252
1dv0A	47	77.03	a.5.2.1	16289
2fjtA	182	78.37		
2hjhA	354	78.59		
1ee4A	423	80.25	a.118.1.1	19128
1r1gA	31	82.64	g.3.7.2	96816
1kafA	108	84.88	d.199.1.1	68372
1vavA	222	85.36	b.29.1.18	108472
1gsjA	258	85.96	c.73.1.2	70397
2pjhB	193	86.12		
2f4lA	297	86.50	b.23.3.1	132927
2p4gA	270	86.89