# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	5.96e-11		
2gcxA	75	2.60e-10		
1qw1A	121	0.000823		
2dtrA	226	0.001026	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1fx7A	230	0.001689	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2qq9A	226	0.01226		
1ri5A	298	10.19	c.66.1.34	97502
1vekA	84	14.25	a.5.2.1	113636
1rhsA	296	14.99	c.46.1.2,c.46.1.2	32703,32704
2dsjA	423	15.40		
1j48A	110	15.91	b.1.7.1	84112
1uarA	285	18.74	c.46.1.2,c.46.1.2	107762,107763
1rhs	296	19.49		
3bmvA	683	24.79		
2pieA	138	29.89		
1y8xB	98	29.92		
2fa1A	160	31.29	d.190.1.2	133182
1z3eB	73	32.27	a.60.3.1	124401
2c81A	418	34.18		
1z6nA	167	34.90	c.47.1.1	124530
2p19A	149	36.64		
1h75A	81	37.40	c.47.1.1	60716
1brwA	433	39.33	a.46.2.1,c.27.1.1,d.41.3.1	17764,31628,38626
1cbfA	285	40.55	c.90.1.1	35587
1r1gA	31	41.05	g.3.7.2	96816
1q0uA	219	46.46	c.37.1.19	95512
1e0cA	271	48.99	c.46.1.2,c.46.1.2	32717,32718
2etjA	250	49.74	c.55.3.1	132360
2py6A	409	51.86		
1ve2A	235	53.11	c.90.1.1	120008
2oggA	152	53.53		
2bl9A	238	57.09		
2d1hA	109	58.98	a.4.5.50	131125
1s95A	333	59.54	d.159.1.3	105375
2tpt	440	61.31		
2ikkA	173	62.75		
1twuA	139	63.59	d.32.1.8	107413
2ev1A	222	69.29		
2gxqA	207	69.74		
1nrwA	288	70.96	c.108.1.10	86128
3cnvA	162	71.19		
1kpgA	287	75.79	c.66.1.18	68735
1nt4A	391	77.07	c.60.1.2	92102
2f4lA	297	80.77	b.23.3.1	132927
2egxA	269	81.97		
2iq1A	274	82.50		
1va0A	239	83.72	c.90.1.1	119899
2nygA	273	83.90		
1im8A	244	84.66	c.66.1.14	66212
1yt8A	539	84.68	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
2ooiA	162	86.25		
2v3mA	131	86.52		
1qdeA	224	88.12	c.37.1.19	32410
1zccA	248	88.58	c.1.18.3	124903
2pkhA	148	88.62		
2zgwA	235	89.48