# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	1.91e-09		
2gcxA	75	2.92e-09		
1qw1A	121	0.001672		
2dtrA	226	0.001813	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1fx7A	230	0.002283	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2qq9A	226	0.02130		
1vekA	84	11.06	a.5.2.1	113636
1y8xB	98	14.68		
1rhsA	296	15.42	c.46.1.2,c.46.1.2	32703,32704
1j48A	110	15.54	b.1.7.1	84112
2dsjA	423	19.18		
1rhs	296	21.16		
1uarA	285	21.18	c.46.1.2,c.46.1.2	107762,107763
2c81A	418	24.93		
1z3eB	73	33.13	a.60.3.1	124401
1h75A	81	35.45	c.47.1.1	60716
1ri5A	298	37.67	c.66.1.34	97502
1ve2A	235	40.12	c.90.1.1	120008
1e0cA	271	42.03	c.46.1.2,c.46.1.2	32717,32718
1brwA	433	43.64	a.46.2.1,c.27.1.1,d.41.3.1	17764,31628,38626
1pchA	88	45.22	d.94.1.1	40564
2ev1A	222	48.08		
2nygA	273	48.51		
1dv0A	47	50.15	a.5.2.1	16289
1cbfA	285	53.59	c.90.1.1	35587
3bn1A	373	53.66		
1opdA	85	54.72	d.94.1.1	40560
1ptfA	88	55.96	d.94.1.1	40549
1q0uA	219	57.28	c.37.1.19	95512
1r1gA	31	58.29	g.3.7.2	96816
2fa1A	160	58.70	d.190.1.2	133182
1nrwA	288	59.38	c.108.1.10	86128
2egxA	269	60.61		
1o69A	394	62.58	c.67.1.4	92560
1zc1A	208	63.62		
2p19A	149	64.68		
3bpdA	100	69.78		
2pieA	138	69.91		
2tpt	440	70.39		
2oggA	152	72.91		
2gxqA	207	74.31		
2d1hA	109	75.41	a.4.5.50	131125
2ogeA	399	75.87		
1z6nA	167	80.43	c.47.1.1	124530
2v3mA	131	80.46		
1va0A	239	82.09	c.90.1.1	119899
1qdeA	224	82.53	c.37.1.19	32410
3cnvA	162	85.26		
1vavA	222	85.35	b.29.1.18	108472
2zgwA	235	86.33		
1nf2A	268	89.59	c.108.1.10	91849