# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	1.92e-09		
2gcxA	75	3.40e-09		
1qw1A	121	0.001048		
2dtrA	226	0.001824	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1fx7A	230	0.002604	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2qq9A	226	0.01624		
1j48A	110	8.554	b.1.7.1	84112
1rhsA	296	8.558	c.46.1.2,c.46.1.2	32703,32704
1rhs	296	11.20		
1y8xB	98	15.79		
1ri5A	298	15.88	c.66.1.34	97502
1uarA	285	21.18	c.46.1.2,c.46.1.2	107762,107763
1vekA	84	23.74	a.5.2.1	113636
1e0cA	271	25.12	c.46.1.2,c.46.1.2	32717,32718
2p19A	149	28.75		
2zgwA	235	30.08		
2c81A	418	30.69		
2f4lA	297	32.43	b.23.3.1	132927
1r1gA	31	33.60	g.3.7.2	96816
1z3eB	73	34.78	a.60.3.1	124401
1h75A	81	35.44	c.47.1.1	60716
2fa1A	160	36.18	d.190.1.2	133182
1zccA	248	36.23	c.1.18.3	124903
1o69A	394	37.21	c.67.1.4	92560
2nygA	273	37.59		
3bn1A	373	39.24		
1cbfA	285	42.33	c.90.1.1	35587
1ve2A	235	42.48	c.90.1.1	120008
1z6nA	167	45.65	c.47.1.1	124530
1opdA	85	45.98	d.94.1.1	40560
1p9bA	442	46.71	c.37.1.10	94385
2oggA	152	47.31		
1im8A	244	47.84	c.66.1.14	66212
1zc1A	208	48.15		
2ikkA	173	50.80		
2eayA	233	50.93		
2pieA	138	51.48		
1q0uA	219	53.69	c.37.1.19	95512
3bpdA	100	53.70		
1pchA	88	54.50	d.94.1.1	40564
3cnvA	162	55.75		
2py6A	409	56.02		
3bmvA	683	58.62		
1kpgA	287	59.18	c.66.1.18	68735
1dv0A	47	61.11	a.5.2.1	16289
1ptfA	88	61.19	d.94.1.1	40549
1va0A	239	66.06	c.90.1.1	119899
1nf2A	268	70.95	c.108.1.10	91849
2gxqA	207	73.38		
1nrwA	288	75.59	c.108.1.10	86128
2ogeA	399	78.45		
2pkhA	148	78.87		
2bb3A	221	78.93	c.90.1.1	128257
2ooiA	162	79.72		
2d1hA	109	80.77	a.4.5.50	131125
1eluA	390	82.93	c.67.1.3	34434
2v3mA	131	84.79		
1qdeA	224	85.86	c.37.1.19	32410
1xdnA	277	87.95	d.142.2.4	115168
2dsjA	423	88.46