# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	3.91e-08		
2gcxA	75	6.63e-08		
2dtrA	226	0.01212	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1qw1A	121	0.05677		
2qq9A	226	0.1009		
1fx7A	230	1.184	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
1j48A	110	27.62	b.1.7.1	84112
1rhsA	296	28.09	c.46.1.2,c.46.1.2	32703,32704
2hjhA	354	29.61		
2pieA	138	30.25		
2jonA	101	38.83		
1wisA	124	39.49	b.1.2.1	120975
1rhs	296	48.95		
2qvpA	275	49.56		
1zelA	298	50.85		
1uarA	285	53.65	c.46.1.2,c.46.1.2	107762,107763
1y8xB	98	59.60		
1q0uA	219	61.13	c.37.1.19	95512
1dvkA	173	72.82	a.72.1.1	18319
2gxqA	207	74.20		
1qdeA	224	75.09	c.37.1.19	32410
1ppjE	196	75.66	b.33.1.1,f.23.12.1	104260,104261
1dv0A	47	88.29	a.5.2.1	16289