# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	1.76e-10		
2gcxA	75	3.07e-10		
1qw1A	121	0.001183		
2dtrA	226	0.001240	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1fx7A	230	0.007771	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2qq9A	226	0.05111		
1ri5A	298	3.590	c.66.1.34	97502
1rhsA	296	7.878	c.46.1.2,c.46.1.2	32703,32704
1y8xB	98	8.406		
1uarA	285	9.748	c.46.1.2,c.46.1.2	107762,107763
1j48A	110	10.77	b.1.7.1	84112
1rhs	296	11.23		
1e0cA	271	17.25	c.46.1.2,c.46.1.2	32717,32718
1z6nA	167	18.29	c.47.1.1	124530
2py6A	409	22.91		
2f4lA	297	24.84	b.23.3.1	132927
1xdnA	277	30.14	d.142.2.4	115168
2g8jA	339	32.81	d.3.1.3	134773
2v3mA	131	32.91		
2aotA	292	33.94	c.66.1.19	127098
1kpgA	287	37.21	c.66.1.18	68735
1z3eB	73	38.28	a.60.3.1	124401
1zccA	248	39.19	c.1.18.3	124903
1kafA	108	41.59	d.199.1.1	68372
2fk8A	318	41.61	c.66.1.18	133648
2iq1A	274	44.88		
2qwvA	208	49.36		
1dv0A	47	63.75	a.5.2.1	16289
1l1eA	287	63.81	c.66.1.18	73454
2j85A	122	64.37	d.321.1.1	138133
2cycA	375	65.75		
2nygA	273	66.57		
2eayA	233	67.79		
1t0yA	122	70.16	d.15.1.1	99066
1wp5A	323	74.96	b.68.10.1	114780
1vekA	84	75.05	a.5.2.1	113636
1r1gA	31	75.36	g.3.7.2	96816
3cs3A	277	76.87		
1opdA	85	77.69	d.94.1.1	40560
2fa1A	160	78.29	d.190.1.2	133182
2oggA	152	79.63		
1pchA	88	79.90	d.94.1.1	40564
1c4xA	285	80.26	c.69.1.10	34684
1se8A	301	80.59	b.40.4.3	105448
1nrwA	288	80.60	c.108.1.10	86128
1vg5A	73	80.91	a.5.2.1	113640
1kvkA	395	81.22	d.14.1.5,d.58.26.3	73060,73061
2hnfA	133	82.75		
2uyoA	310	83.74		
1cbfA	285	85.47	c.90.1.1	35587
2aouA	292	86.15	c.66.1.19	127100
2j6pA	152	86.37		
2h1rA	299	87.43