# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2gcxA 75 5.81e-06 2h3jA 75 1.65e-05 1fx7A 230 0.01198 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1qw1A 121 0.6300 2qq9A 226 1.365 1dj7B 75 2.260 b.34.4.3 24598 1w70A 60 2.335 1gcqA 61 3.136 b.34.2.1 60434 2g6fX 59 3.575 2j6fA 62 3.698 1ootA 60 3.956 b.34.2.1 93386 1zlmA 58 3.967 1bbzA 58 4.601 b.34.2.1 24477 2pu9B 74 4.606 1h75A 81 5.131 c.47.1.1 60716 2d1xA 66 5.204 1zx6A 58 5.631 2a08A 60 5.634 1utiA 58 5.643 b.34.2.1 99962 3c0cA 73 7.066 2drmA 58 7.488 3cnvA 162 7.718 2o88A 58 8.083 1uarA 285 8.410 c.46.1.2,c.46.1.2 107762,107763 1eejA 216 8.530 c.47.1.9,d.17.3.1 33057,38071 1widA 130 8.876 b.142.1.2 114667 1u06A 62 9.343 b.34.2.1 119404 1wyxA 69 9.716 2gncA 60 10.55 1hd3A 62 12.69 b.34.2.1 65802 1rhs 296 13.04 1rhsA 296 13.32 c.46.1.2,c.46.1.2 32703,32704 2ggrA 76 14.19 1uj0A 62 14.62 b.34.2.1 99449 1semA 58 15.75 b.34.2.1 24544 2ooiA 162 15.76 2bzyA 67 16.00 1phtA 85 16.62 b.34.2.1 24483 2a28A 54 17.64 2oggA 152 17.77 1pqhA 143 18.08 b.52.2.1 95017 2o31A 67 19.82 1kzlA 208 20.04 b.43.4.3,b.43.4.3 77635,77636 1cbfA 285 24.89 c.90.1.1 35587 2pjsA 119 25.93 1ug1A 92 25.98 b.34.2.1 99360 2jngA 105 26.79 1e0cA 271 26.83 c.46.1.2,c.46.1.2 32717,32718 1z85A 234 27.57 2pkhA 148 28.16 2fpeA 62 28.56 1wn2A 121 28.57 1pht 85 28.96 2yxyA 115 29.22 1v7lA 163 31.36 c.8.2.1 113562 1y0mA 61 31.65 2p19A 149 32.04 1ckaA 57 33.31 b.34.2.1 24459 1zc1A 208 35.55 1xtyA 120 35.68 1i8dA 213 36.16 b.43.4.3,b.43.4.3 61953,61954 2de0X 526 36.49 1z9zA 60 37.21 1gybA 125 37.62 d.17.4.2 70744 1gy7A 125 38.01 d.17.4.2 70738 1vf1A 229 38.26 2ikkA 173 40.28 2heqA 84 41.25 1qcsA 211 42.33 b.52.2.3,d.31.1.1 26927,38461 1dcjA 81 43.82 d.68.3.3 59115 2fa1A 160 46.34 d.190.1.2 133182 2o9sA 67 48.56 3cp0A 82 49.23 1zuyA 58 50.07 1shfA 59 50.55 b.34.2.1 24462 1umuA 116 50.79 b.87.1.1 28382 1q7sA 117 51.06 c.131.1.1 96055 2ivfA 976 51.75 2iimA 62 52.45 b.34.2.1 137434 2qk0A 74 52.48 1kllA 130 53.10 d.32.1.2 72720 2v1qA 60 53.31 1suuA 312 53.63 b.68.10.1 99006 2bsxA 253 54.22 c.56.2.1 129128 1j48A 110 57.37 b.1.7.1 84112 2pp6A 102 59.08 1wexA 104 59.81 d.58.7.1 114568 1noaA 113 60.71 b.1.7.1 22208 2v1rA 80 60.81 1yn8A 59 61.51 1wjxA 122 61.77 b.111.1.1 114716 2nxcA 254 62.07 c.66.1.39 138739 2hdaA 64 62.33 1jbwA 428 62.58 c.59.1.2,c.72.2.2 62860,62861 1wlfA 179 63.05 d.31.1.1,b.52.2.3 109396,109397 1uadC 99 68.64 b.1.18.18 88379 2egvA 229 68.74 2uyoA 310 69.10 2pa1A 87 69.39 2zbvA 263 71.34 1a62 130 71.70 2j05A 65 71.90 2rbbA 141 73.07 1q3oA 109 74.72 b.36.1.1 95700 1zvtA 256 75.63 1jb0E 75 75.68 b.34.4.2 62824 1a62A 130 82.78 a.140.3.1,b.40.4.5 64708,64709 2nwiA 172 82.80 1wp5A 323 84.05 b.68.10.1 114780 1jo8A 58 84.87 b.34.2.1 71774 1k3yA 221 86.66 a.45.1.1,c.47.1.5 77245,77246 1cskA 71 88.12 b.34.2.1 24513 2jdiA 510 88.48 3bs2A 148 89.77