# TARGET T0492 # Using neural net dunbrack-40pc-3157-t04-IDGaaH13-3-13-7-13-9-13-11-pb-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 16 (1 pb ) # The input amino acid frequencies were determined from # alignment T0492.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 61.0248 # Pos AA A B C D E F G H I J K L M N O P 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.100 0.071 0.301 0.220 0.017 0.019 0.062 0.005 0.026 0.003 0.013 0.015 0.049 0.017 0.014 0.067 2 F 0.033 0.027 0.412 0.479 0.002 0.004 0.003 0.012 0.001 0.001 0.002 0.002 0.007 0.001 0.006 0.007 3 S 0.006 0.003 0.012 0.041 0.011 0.884 0.001 0.001 0.004 0.013 0.003 0.003 0.014 0.001 0.001 0.004 4 L 0.004 0.013 0.001 0.020 0.018 0.035 0.001 0.005 0.001 0.001 0.884 0.004 0.010 0.005 0.001 0.001 5 R 0.001 0.311 0.004 0.044 0.001 0.002 0.001 0.026 0.003 0.001 0.006 0.570 0.008 0.001 0.021 0.001 6 D 0.004 0.010 0.257 0.087 0.012 0.005 0.033 0.001 0.030 0.001 0.002 0.005 0.041 0.007 0.006 0.500 7 A 0.097 0.005 0.772 0.037 0.004 0.006 0.015 0.006 0.001 0.001 0.003 0.002 0.024 0.001 0.008 0.020 8 K 0.001 0.002 0.015 0.002 0.613 0.023 0.161 0.002 0.001 0.004 0.001 0.001 0.001 0.171 0.001 0.001 9 C 0.003 0.013 0.002 0.036 0.002 0.010 0.001 0.809 0.001 0.001 0.026 0.001 0.002 0.001 0.094 0.001 10 G 0.001 0.039 0.005 0.015 0.001 0.001 0.001 0.001 0.831 0.063 0.001 0.008 0.001 0.001 0.001 0.036 11 Q 0.908 0.005 0.027 0.054 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 12 T 0.002 0.019 0.879 0.098 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 13 V 0.001 0.003 0.043 0.953 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 14 K 0.001 0.002 0.019 0.974 0.003 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 15 V 0.001 0.001 0.004 0.376 0.054 0.563 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 16 V 0.001 0.420 0.002 0.547 0.005 0.006 0.001 0.018 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 17 K 0.001 0.011 0.002 0.903 0.028 0.031 0.001 0.001 0.012 0.005 0.003 0.002 0.001 0.001 0.001 0.001 18 L 0.035 0.019 0.207 0.197 0.371 0.095 0.012 0.023 0.002 0.003 0.022 0.008 0.004 0.002 0.001 0.001 19 H 0.002 0.073 0.036 0.292 0.019 0.240 0.002 0.265 0.004 0.008 0.027 0.015 0.005 0.001 0.010 0.001 20 G 0.004 0.048 0.004 0.071 0.216 0.136 0.043 0.011 0.028 0.193 0.163 0.041 0.015 0.022 0.001 0.005 21 T 0.040 0.028 0.007 0.018 0.002 0.156 0.001 0.266 0.002 0.002 0.223 0.153 0.045 0.001 0.055 0.001 22 G 0.002 0.004 0.003 0.004 0.001 0.029 0.001 0.001 0.018 0.029 0.483 0.241 0.174 0.001 0.001 0.011 23 A 0.011 0.003 0.002 0.001 0.001 0.010 0.001 0.001 0.001 0.001 0.059 0.530 0.380 0.001 0.001 0.001 24 L 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.014 0.078 0.902 0.001 0.001 0.001 25 K 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.010 0.984 0.001 0.001 0.001 26 R 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.995 0.001 0.001 0.001 27 R 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.995 0.001 0.001 0.001 28 I 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.994 0.001 0.001 0.001 29 M 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.985 0.004 0.004 0.001 30 D 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.012 0.976 0.001 0.004 31 M 0.002 0.001 0.015 0.001 0.001 0.001 0.001 0.006 0.001 0.001 0.001 0.001 0.017 0.001 0.952 0.003 32 G 0.001 0.001 0.039 0.003 0.001 0.001 0.001 0.001 0.004 0.002 0.001 0.001 0.003 0.001 0.001 0.946 33 I 0.903 0.006 0.023 0.021 0.011 0.008 0.008 0.001 0.001 0.001 0.003 0.001 0.007 0.001 0.001 0.006 34 T 0.001 0.025 0.042 0.007 0.716 0.046 0.086 0.012 0.001 0.002 0.002 0.002 0.001 0.057 0.001 0.001 35 R 0.001 0.019 0.005 0.087 0.002 0.018 0.001 0.764 0.003 0.001 0.031 0.002 0.001 0.001 0.065 0.001 36 G 0.001 0.046 0.013 0.045 0.001 0.002 0.001 0.001 0.822 0.024 0.001 0.010 0.001 0.001 0.001 0.036 37 C 0.888 0.005 0.028 0.077 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 38 E 0.001 0.007 0.879 0.112 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 39 I 0.001 0.002 0.018 0.978 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 40 Y 0.001 0.002 0.008 0.988 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 41 I 0.001 0.001 0.002 0.589 0.040 0.368 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 42 R 0.001 0.203 0.003 0.741 0.005 0.027 0.001 0.014 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 43 K 0.001 0.023 0.002 0.890 0.022 0.042 0.001 0.001 0.006 0.005 0.005 0.003 0.001 0.001 0.001 0.001 44 V 0.014 0.103 0.230 0.598 0.009 0.019 0.001 0.011 0.002 0.001 0.005 0.004 0.002 0.001 0.001 0.002 45 A 0.005 0.012 0.037 0.281 0.075 0.530 0.004 0.005 0.005 0.022 0.009 0.007 0.007 0.001 0.001 0.001 46 P 0.005 0.069 0.010 0.045 0.544 0.056 0.030 0.020 0.001 0.001 0.175 0.006 0.005 0.032 0.001 0.001 47 L 0.002 0.091 0.004 0.090 0.004 0.018 0.002 0.524 0.010 0.002 0.018 0.044 0.003 0.001 0.184 0.002 48 G 0.007 0.073 0.109 0.050 0.001 0.004 0.007 0.003 0.327 0.061 0.004 0.008 0.006 0.001 0.004 0.335 49 D 0.844 0.013 0.037 0.024 0.001 0.052 0.001 0.002 0.003 0.001 0.003 0.004 0.009 0.001 0.002 0.004 50 P 0.038 0.094 0.578 0.134 0.001 0.067 0.001 0.002 0.003 0.001 0.065 0.005 0.006 0.001 0.001 0.005 51 I 0.011 0.193 0.060 0.705 0.001 0.014 0.001 0.001 0.001 0.001 0.001 0.012 0.001 0.001 0.001 0.001 52 Q 0.001 0.007 0.172 0.813 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 53 I 0.001 0.003 0.058 0.932 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 54 N 0.001 0.003 0.017 0.854 0.061 0.060 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 55 V 0.001 0.002 0.001 0.066 0.852 0.055 0.004 0.008 0.001 0.001 0.007 0.001 0.001 0.003 0.001 0.001 56 R 0.001 0.057 0.001 0.052 0.006 0.034 0.001 0.812 0.002 0.002 0.014 0.007 0.001 0.001 0.011 0.001 57 G 0.004 0.032 0.004 0.078 0.002 0.032 0.002 0.006 0.547 0.115 0.103 0.034 0.008 0.001 0.001 0.031 58 Y 0.694 0.028 0.078 0.056 0.001 0.010 0.001 0.003 0.003 0.001 0.022 0.073 0.023 0.001 0.004 0.003 59 E 0.021 0.039 0.471 0.181 0.002 0.091 0.005 0.001 0.003 0.003 0.019 0.052 0.094 0.002 0.001 0.015 60 L 0.013 0.021 0.096 0.541 0.004 0.072 0.005 0.002 0.001 0.001 0.034 0.025 0.178 0.001 0.002 0.005 61 S 0.002 0.053 0.053 0.586 0.005 0.057 0.006 0.003 0.002 0.001 0.016 0.036 0.170 0.002 0.002 0.008 62 L 0.003 0.032 0.069 0.576 0.008 0.036 0.009 0.006 0.002 0.001 0.021 0.019 0.204 0.002 0.003 0.009 63 R 0.005 0.025 0.057 0.139 0.024 0.436 0.013 0.010 0.003 0.003 0.022 0.026 0.223 0.005 0.002 0.009 64 K 0.011 0.036 0.031 0.103 0.006 0.066 0.008 0.018 0.003 0.002 0.501 0.027 0.165 0.007 0.010 0.006 65 S 0.005 0.061 0.015 0.032 0.002 0.065 0.008 0.006 0.005 0.003 0.105 0.500 0.169 0.006 0.012 0.008 66 A 0.017 0.084 0.049 0.074 0.002 0.013 0.009 0.003 0.009 0.001 0.055 0.084 0.430 0.006 0.024 0.140 67 A 0.021 0.014 0.116 0.028 0.001 0.116 0.037 0.001 0.003 0.002 0.014 0.086 0.488 0.032 0.009 0.034 68 E 0.005 0.438 0.210 0.083 0.001 0.004 0.002 0.005 0.001 0.001 0.002 0.005 0.185 0.001 0.026 0.033 69 M 0.011 0.011 0.130 0.646 0.001 0.007 0.004 0.001 0.010 0.001 0.001 0.001 0.018 0.007 0.001 0.152 70 I 0.022 0.002 0.900 0.070 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 71 E 0.001 0.005 0.094 0.840 0.014 0.037 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.005 72 V 0.003 0.018 0.007 0.610 0.177 0.158 0.004 0.009 0.001 0.001 0.007 0.001 0.003 0.001 0.001 0.001 73 E 0.001 0.151 0.006 0.460 0.053 0.123 0.002 0.160 0.005 0.006 0.021 0.008 0.002 0.001 0.002 0.001