# TARGET T0492 # Using neural net dunbrack-40pc-3157-t04-IDGaaH13-3-13-7-13-9-13-11-n_sep-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 20 (1 n_sep ) # The input amino acid frequencies were determined from # alignment T0492.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 61.0248 # Pos AA G H I J K L M N P Q R S T U V W A B C D 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.092 0.045 0.011 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.119 0.009 0.035 0.679 2 F 0.051 0.029 0.013 0.003 0.004 0.002 0.003 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.001 0.001 0.491 0.004 0.085 0.306 3 S 0.012 0.025 0.002 0.001 0.003 0.001 0.001 0.001 0.002 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.128 0.005 0.153 0.658 4 L 0.022 0.021 0.003 0.001 0.001 0.001 0.002 0.001 0.003 0.002 0.001 0.001 0.001 0.001 0.001 0.002 0.368 0.006 0.058 0.506 5 R 0.013 0.038 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.002 0.006 0.004 0.001 0.089 0.004 0.498 0.335 6 D 0.401 0.026 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.014 0.001 0.011 0.004 0.005 0.002 0.022 0.041 0.141 0.330 7 A 0.326 0.230 0.007 0.001 0.001 0.001 0.001 0.001 0.002 0.067 0.003 0.002 0.006 0.002 0.001 0.001 0.079 0.018 0.022 0.233 8 K 0.067 0.129 0.005 0.002 0.002 0.001 0.001 0.001 0.097 0.009 0.008 0.002 0.001 0.001 0.001 0.001 0.058 0.011 0.312 0.296 9 C 0.086 0.041 0.004 0.001 0.001 0.001 0.001 0.001 0.011 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.065 0.013 0.063 0.710 10 G 0.152 0.079 0.009 0.003 0.001 0.001 0.004 0.002 0.008 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.110 0.053 0.049 0.524 11 Q 0.648 0.002 0.015 0.003 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.059 0.013 0.094 0.159 12 T 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.088 0.001 0.028 0.876 13 V 0.002 0.001 0.001 0.001 0.028 0.009 0.017 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.862 0.001 0.018 0.059 14 K 0.002 0.001 0.001 0.001 0.014 0.035 0.007 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.793 0.001 0.024 0.114 15 V 0.001 0.001 0.001 0.001 0.002 0.001 0.010 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.006 0.845 0.001 0.014 0.111 16 V 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.003 0.005 0.005 0.005 0.938 0.001 0.010 0.029 17 K 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.003 0.027 0.074 0.070 0.020 0.422 0.001 0.046 0.325 18 L 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.003 0.010 0.003 0.036 0.026 0.021 0.007 0.591 0.001 0.080 0.211 19 H 0.012 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.022 0.032 0.022 0.006 0.011 0.005 0.004 0.002 0.327 0.003 0.176 0.373 20 G 0.029 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.024 0.006 0.005 0.002 0.001 0.001 0.001 0.001 0.095 0.005 0.113 0.712 21 T 0.022 0.006 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.031 0.008 0.150 0.777 22 G 0.061 0.006 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.014 0.084 0.824 23 A 0.078 0.028 0.017 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.006 0.268 0.596 24 L 0.050 0.153 0.010 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.010 0.007 0.277 0.483 25 K 0.053 0.659 0.005 0.001 0.005 0.004 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.017 0.007 0.063 0.184 26 R 0.013 0.829 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.003 0.024 0.121 27 R 0.007 0.925 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.003 0.006 0.054 28 I 0.005 0.968 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.003 0.002 0.018 29 M 0.010 0.956 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.008 0.002 0.022 30 D 0.023 0.945 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.006 0.001 0.021 31 M 0.114 0.690 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.169 0.001 0.019 32 G 0.527 0.112 0.025 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.265 0.002 0.060 33 I 0.012 0.011 0.868 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.002 0.004 0.088 34 T 0.004 0.010 0.006 0.011 0.001 0.001 0.001 0.001 0.019 0.006 0.003 0.001 0.001 0.001 0.001 0.001 0.197 0.002 0.283 0.455 35 R 0.009 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.013 0.001 0.043 0.927 36 G 0.020 0.012 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.279 0.015 0.186 0.482 37 C 0.595 0.002 0.010 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.087 0.021 0.080 0.198 38 E 0.013 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.307 0.001 0.061 0.608 39 I 0.003 0.001 0.001 0.001 0.079 0.011 0.009 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.742 0.001 0.022 0.124 40 Y 0.002 0.001 0.001 0.001 0.010 0.039 0.007 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.856 0.001 0.015 0.060 41 I 0.002 0.002 0.001 0.001 0.001 0.001 0.008 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.856 0.001 0.018 0.101 42 R 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.002 0.943 0.001 0.011 0.032 43 K 0.005 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.002 0.005 0.013 0.021 0.006 0.627 0.003 0.049 0.258 44 V 0.051 0.005 0.002 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.020 0.002 0.016 0.010 0.014 0.007 0.327 0.014 0.071 0.459 45 A 0.021 0.005 0.003 0.001 0.001 0.001 0.001 0.001 0.004 0.039 0.005 0.003 0.009 0.004 0.002 0.002 0.461 0.004 0.082 0.353 46 P 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.997 47 L 0.014 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.243 0.003 0.080 0.644 48 G 0.169 0.007 0.001 0.002 0.001 0.001 0.001 0.001 0.007 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.093 0.014 0.054 0.650 49 D 0.394 0.002 0.004 0.002 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.026 0.006 0.246 0.314 50 P 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.996 51 I 0.008 0.001 0.001 0.001 0.038 0.086 0.029 0.011 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.530 0.001 0.141 0.153 52 Q 0.020 0.002 0.001 0.002 0.017 0.036 0.024 0.025 0.001 0.001 0.001 0.001 0.001 0.010 0.020 0.008 0.434 0.003 0.073 0.323 53 I 0.006 0.005 0.001 0.001 0.003 0.001 0.021 0.005 0.001 0.001 0.001 0.001 0.120 0.077 0.031 0.025 0.552 0.001 0.016 0.134 54 N 0.003 0.009 0.001 0.001 0.002 0.002 0.002 0.009 0.001 0.012 0.009 0.003 0.036 0.013 0.013 0.008 0.659 0.002 0.037 0.180 55 V 0.003 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.142 0.030 0.008 0.006 0.004 0.002 0.001 0.004 0.599 0.001 0.037 0.155 56 R 0.002 0.016 0.001 0.001 0.001 0.001 0.001 0.001 0.028 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.475 0.001 0.131 0.338 57 G 0.024 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.142 0.039 0.140 0.643 58 Y 0.234 0.010 0.040 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.074 0.043 0.110 0.484 59 E 0.014 0.026 0.016 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.333 0.005 0.240 0.362 60 L 0.015 0.070 0.008 0.003 0.187 0.016 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.273 0.006 0.121 0.292 61 S 0.034 0.222 0.008 0.002 0.021 0.018 0.006 0.004 0.001 0.001 0.001 0.001 0.004 0.007 0.004 0.003 0.358 0.012 0.066 0.228 62 L 0.039 0.342 0.008 0.001 0.001 0.001 0.003 0.002 0.003 0.001 0.001 0.001 0.006 0.009 0.004 0.003 0.220 0.013 0.065 0.275 63 R 0.049 0.400 0.005 0.001 0.001 0.001 0.001 0.001 0.003 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.193 0.019 0.084 0.237 64 K 0.075 0.207 0.016 0.001 0.001 0.001 0.001 0.001 0.009 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.284 0.034 0.054 0.313 65 S 0.045 0.123 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.041 0.010 0.115 0.655 66 A 0.154 0.071 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.182 0.065 0.146 0.369 67 A 0.282 0.237 0.043 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.071 0.041 0.065 0.255 68 E 0.079 0.174 0.012 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.346 0.013 0.185 0.186 69 M 0.252 0.163 0.006 0.001 0.005 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.120 0.019 0.025 0.406 70 I 0.136 0.157 0.008 0.001 0.002 0.002 0.003 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.544 0.012 0.018 0.113 71 E 0.027 0.057 0.006 0.001 0.003 0.002 0.003 0.002 0.001 0.001 0.001 0.001 0.001 0.003 0.006 0.003 0.623 0.008 0.048 0.206 72 V 0.010 0.028 0.009 0.002 0.002 0.001 0.004 0.002 0.001 0.001 0.001 0.001 0.010 0.015 0.010 0.008 0.606 0.005 0.022 0.266 73 E 0.005 0.018 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.002 0.001 0.006 0.005 0.003 0.003 0.688 0.002 0.062 0.200