# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	6.13e-11		
2gcxA	75	1.56e-10		
1fx7A	230	6.47e-05	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2qq9A	226	0.000277		
2dtrA	226	0.002029	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1qw1A	121	0.003111		
2dtr	226	0.05232		
1bymA	97	1.347	b.34.1.2	24458
1rhs	296	3.364		
1rhsA	296	6.685	c.46.1.2,c.46.1.2	32703,32704
1h75A	81	7.476	c.47.1.1	60716
1e0cA	271	8.023	c.46.1.2,c.46.1.2	32717,32718
1s68A	249	11.49	d.142.2.4	98591
2c81A	418	12.15		
2qh8A	302	12.17		
2fa1A	160	12.48	d.190.1.2	133182
1cbfA	285	13.88	c.90.1.1	35587
1va0A	239	14.78	c.90.1.1	119899
1mdoA	393	16.19	c.67.1.4	79013
3cnvA	162	19.66		
1uarA	285	20.84	c.46.1.2,c.46.1.2	107762,107763
2ikkA	173	21.49		
1pbeA	394	21.70	c.3.1.2,d.16.1.2	30338,37869
2bb3A	221	22.80	c.90.1.1	128257
1pjqA	457	27.52	c.2.1.11,c.90.1.1,e.37.1.1	94766,94767,94768
2oggA	152	27.61		
1z2mA	155	27.92	d.15.1.1,d.15.1.1	124387,124388
1zc1A	208	28.06		
2p19A	149	29.22		
1vkjA	285	29.65	c.37.1.5	108666
1xhlA	297	31.11	c.2.1.2	109591
1wohA	305	31.90	c.42.1.1	109446
3bn1A	373	31.93		
2pkhA	148	32.84		
1o69A	394	32.90	c.67.1.4	92560
1sfxA	109	33.01	a.4.5.50	105505
1ne2A	200	33.59	c.66.1.32	85586
2d1hA	109	35.34	a.4.5.50	131125
2j85A	122	36.64	d.321.1.1	138133
1hrkA	359	37.34	c.92.1.1	61228
1z3eB	73	37.91	a.60.3.1	124401
2h1rA	299	39.66		
1b9hA	388	39.68	c.67.1.4	34488
2pwyA	258	40.51		
2py6A	409	42.09		
1y8xB	98	42.77		
2qwvA	208	43.10		
1xkqA	280	43.30	c.2.1.2	115417
1r1gA	31	44.88	g.3.7.2	96816
1opdA	85	48.74	d.94.1.1	40560
2ccqA	99	50.26	d.314.1.1	130252
1pchA	88	50.97	d.94.1.1	40564
1nrvA	105	53.15	d.93.1.1	86126
2nygA	273	53.28		
2ooiA	162	53.40		
1vekA	84	56.49	a.5.2.1	113636
1qusA	322	57.00	d.2.1.6	36991
1x8mA	288	59.37	b.82.1.13	109516
1ve2A	235	59.79	c.90.1.1	120008
2z6rA	265	67.24		
1lb2B	84	69.06	a.60.3.1	77871
2eayA	233	69.82		
2graA	277	70.23		
1ptfA	88	71.48	d.94.1.1	40549
1wb4A	297	71.52	c.69.1.2	120827
1y51A	88	72.48		
1pch	88	73.08		
2fziA	206	75.37	c.71.1.1	134448
1a8i	842	76.17		
2ogeA	399	77.80		
1elqA	390	79.01	c.67.1.3	34436
1v2yA	105	79.74	d.15.1.1	100275
2azpA	318	80.31		
1opd	85	80.32		
1dv0A	47	82.93	a.5.2.1	16289
2eenA	183	83.07		
3bpdA	100	83.61		
2nwiA	172	85.57		
1zccA	248	87.29	c.1.18.3	124903
2pkpA	170	89.40