# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	8.90e-10		
2gcxA	75	1.48e-09		
1fx7A	230	0.000211	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2qq9A	226	0.000802		
2dtr	226	0.004042		
2dtrA	226	0.004673	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1qw1A	121	0.01835		
1bymA	97	0.3141	b.34.1.2	24458
1rhs	296	5.831		
1e0cA	271	8.399	c.46.1.2,c.46.1.2	32717,32718
1h75A	81	8.772	c.47.1.1	60716
1rhsA	296	10.09	c.46.1.2,c.46.1.2	32703,32704
1uarA	285	12.32	c.46.1.2,c.46.1.2	107762,107763
2c81A	418	14.55		
2py6A	409	20.75		
3bn1A	373	22.26		
1mdoA	393	24.35	c.67.1.4	79013
1wohA	305	27.65	c.42.1.1	109446
3cnvA	162	28.12		
1cbfA	285	28.24	c.90.1.1	35587
1vkjA	285	29.35	c.37.1.5	108666
1y8xB	98	31.67		
1s68A	249	32.49	d.142.2.4	98591
2bb3A	221	32.57	c.90.1.1	128257
2qwvA	208	37.42		
1va0A	239	41.35	c.90.1.1	119899
2ikkA	173	41.39		
1r1gA	31	42.58	g.3.7.2	96816
1ne2A	200	42.65	c.66.1.32	85586
1x8mA	288	43.05	b.82.1.13	109516
2pkhA	148	43.93		
2ogeA	399	44.26		
1z2mA	155	44.95	d.15.1.1,d.15.1.1	124387,124388
1yt8A	539	45.02	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
2fa1A	160	45.49	d.190.1.2	133182
2oggA	152	45.91		
1o69A	394	47.38	c.67.1.4	92560
2z6rA	265	47.72		
1v5tA	90	47.79	d.15.1.1	108385
1xhlA	297	49.57	c.2.1.2	109591
1hrkA	359	49.70	c.92.1.1	61228
1xkqA	280	50.46	c.2.1.2	115417
1zc1A	208	50.92		
1pjqA	457	51.65	c.2.1.11,c.90.1.1,e.37.1.1	94766,94767,94768
1pbeA	394	51.82	c.3.1.2,d.16.1.2	30338,37869
2nygA	273	53.09		
1wp5A	323	58.39	b.68.10.1	114780
2p19A	149	58.66		
2qh8A	302	62.59		
1opdA	85	66.33	d.94.1.1	40560
2h1rA	299	69.02		
2pwyA	258	69.34		
1sfxA	109	70.04	a.4.5.50	105505
2fziA	206	70.09	c.71.1.1	134448
2yvlA	248	72.00		
1b9hA	388	74.75	c.67.1.4	34488
1v2yA	105	76.79	d.15.1.1	100275
1ptfA	88	77.20	d.94.1.1	40549
1pchA	88	78.23	d.94.1.1	40564
2ooiA	162	78.71		
1z3eB	73	80.46	a.60.3.1	124401
2dekA	265	83.82	c.90.1.1	131430
2ggtA	164	83.83	c.47.1.10	135156
1zccA	248	83.96	c.1.18.3	124903
2graA	277	84.58		
1vekA	84	85.22	a.5.2.1	113636
1nrvA	105	86.22	d.93.1.1	86126
1wc2A	181	87.84