# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2gcxA 75 4.10e-12 2h3jA 75 8.85e-12 1fx7A 230 6.22e-06 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2qq9A 226 0.000168 1qw1A 121 0.000526 2dtrA 226 0.002528 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2dtr 226 0.07831 1bymA 97 0.1314 b.34.1.2 24458 1mdoA 393 1.045 c.67.1.4 79013 2c81A 418 1.326 3bn1A 373 1.983 1h75A 81 2.447 c.47.1.1 60716 1b9hA 388 2.480 c.67.1.4 34488 1rhs 296 2.608 1o69A 394 2.868 c.67.1.4 92560 1uarA 285 2.985 c.46.1.2,c.46.1.2 107762,107763 2ogeA 399 4.118 1e0cA 271 4.153 c.46.1.2,c.46.1.2 32717,32718 1rhsA 296 4.432 c.46.1.2,c.46.1.2 32703,32704 1zc1A 208 4.579 2qh8A 302 5.342 1nrvA 105 6.462 d.93.1.1 86126 1opdA 85 6.662 d.94.1.1 40560 2ghaA 382 7.531 2nygA 273 7.856 1z2mA 155 8.041 d.15.1.1,d.15.1.1 124387,124388 1pchA 88 8.650 d.94.1.1 40564 1ptfA 88 9.343 d.94.1.1 40549 1opd 85 10.46 1y8xB 98 10.47 1elqA 390 10.69 c.67.1.3 34436 1y51A 88 10.96 2fa1A 160 11.18 d.190.1.2 133182 1pch 88 11.56 1s68A 249 12.23 d.142.2.4 98591 1sphA 88 13.27 d.94.1.1 40544 1ptf 88 13.37 1ne2A 200 13.78 c.66.1.32 85586 1lb2B 84 13.86 a.60.3.1 77871 3cnvA 162 14.34 1eluA 390 14.90 c.67.1.3 34434 1v5tA 90 15.30 d.15.1.1 108385 2vsgA 358 15.50 h.4.1.1 45780 1ydgA 211 17.31 c.23.5.8 116614 1hrkA 359 17.92 c.92.1.1 61228 2p19A 149 19.30 1xhlA 297 19.68 c.2.1.2 109591 1xkqA 280 19.86 c.2.1.2 115417 1vekA 84 21.15 a.5.2.1 113636 1v2yA 105 22.84 d.15.1.1 100275 2yvlA 248 23.54 1yemA 179 24.94 d.63.1.2 116646 2o55A 258 26.17 1z3eB 73 27.87 a.60.3.1 124401 2ikkA 173 28.08 2ooiA 162 28.41 2pkhA 148 29.32 1sfxA 109 32.66 a.4.5.50 105505 1vg5A 73 33.22 a.5.2.1 113640 3cq9A 227 33.41 1dv0A 47 33.73 a.5.2.1 16289 2qwvA 208 34.05 1mdwA 328 34.44 d.3.1.3 84934 1fr3A 67 34.62 b.40.6.1 25436 3bwgA 239 35.40 2qtdA 105 37.36 2iq1A 274 39.72 3bkxA 275 40.19 1k0wA 231 40.42 c.74.1.1 77220 2d1hA 109 41.70 a.4.5.50 131125 2eayA 233 41.97 1mq4A 272 42.56 d.144.1.7 91391 1x8mA 288 42.83 b.82.1.13 109516 1fqtA 112 43.13 b.33.1.1 24441 2pfrA 294 43.33 2pwyA 258 43.92 2g8jA 339 45.48 d.3.1.3 134773 1cbfA 285 46.90 c.90.1.1 35587 1ygtA 111 47.13 1u9iA 519 48.54 c.37.1.11,c.37.1.11 119637,119638 1dl5A 317 49.32 c.66.1.7,d.197.1.1 64720,64721 2azpA 318 50.29 1va0A 239 51.61 c.90.1.1 119899 1r1gA 31 51.68 g.3.7.2 96816 2egxA 269 51.95 1v95A 130 52.71 c.51.1.1 108435 1x7gA 261 55.86 c.2.1.2 114929 1z0rA 53 56.33 b.129.1.3 124326 2fncA 381 57.49 1z02A 446 57.96 1el6A 219 58.41 d.182.1.1 42606 1jyhA 157 59.56 d.60.1.3 71956 1o6aA 96 60.28 b.139.1.1 92562 1k4nA 192 61.16 d.32.1.5 72059 2p4zA 284 62.21 2e5vA 472 62.51 1pjqA 457 62.52 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 3bhdA 234 62.67 1tl9A 339 66.79 d.3.1.3 112505 2eenA 183 67.43 2j85A 122 67.60 d.321.1.1 138133 1npyA 271 68.28 c.2.1.7,c.58.1.5 85995,85996 2okfA 140 68.42 2hdeA 148 69.12 1mo1A 87 70.08 d.94.1.1 91363 2h1rA 299 71.89 1u32A 293 73.54 d.159.1.3 107631 3bkhA 268 75.69 3ch0A 272 76.77 2uyoA 310 78.38 1kafA 108 80.10 d.199.1.1 68372 1qyrA 252 80.64 c.66.1.24 104657 2ev1A 222 81.69 2vbfA 570 81.76 2gd9A 189 82.02 2vqeN 61 82.69 2yxeA 215 83.85 2d0iA 333 85.48 2uubN 61 85.66 g.39.1.7 139945 2nwiA 172 85.76 1yfbA 59 86.08 b.129.1.3 123057 1vkjA 285 86.19 c.37.1.5 108666 1pgyA 47 87.05 a.5.2.1 94696 1vd6A 224 87.18 c.1.18.3 119991 2od0A 105 87.46 2bwbA 46 87.93 a.5.2.1 129329 1fjgN 61 88.58 g.39.1.7 45154 1wohA 305 88.89 c.42.1.1 109446 2qg5A 294 89.17 1h9oA 112 89.73 d.93.1.1 60837